Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_07g0000540 OGI:07001140 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr07:421296-422373
Gene Symbol SMCP1, OsSMCP1
DNA seq

gagaaacagtatttgtgattgatttgttgcaaaagcacaggcaaacatggtcctatcgtttgtactatttgattatgtcatcccaagctttactgatcatgctcccaatacatttcggcaacaacattttaacatcattttcctttcctacagacattaactaacctgatgaaccctttgctggtcacaacctccacatcaaaacgtgcttgacatgattcattttttgcacagtatttacagccccaatggttgacatgatccatttcgcacaatatatgttttggcattcggaaatgtcaatgatatctcagtagccaagatctcccaatggccatgagacacttagtgcctgccaggaattttcacccattgcagttgcacttgcagctcaccactctcgacgtttctaagtcggagaataatgtcctggacaaatttaccattcctccagcataggtgactctcatcagcaaggcagttctggttggatggtcgaattgtttttatgatggaaccattccgaatgttctccgggtccatgttcagaacttccatgaagggctccaggtctatttctgcatctcccattgggtcgtctctactgaaagtgtctttgtcaaacaccccctgtttatttcaacagaagaagaaaatccacaatgtgagcattcattaaaaaaaaaacagggttgaacatgaaatatcataatcagttagtacacatgcttgtaagaaaacaacatccactcacaagcttaatcggtgcaatagggttcatgatcgacaaagttagctcttcatgccaaataggattcacagatttcttctttacactagtcttcactttctgtaatatgatcaaaacacaaaactcggtaagacactgagaacaatatatactcaaacaaaagagatggagatgaggcaaatcgctagagatataaaaacaaaaaagtaatcatacttgcttgccgaggcgaaggacgacatatggatcactgcctcttgtgtcgcggtaggcaaggttaatcccacgcaccacccgtattttcaagaggcctaccaatccgtccat

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CDS seq

atggacggattggtaggcctcttgaaaatacgggtggtgcgtgggattaaccttgcctaccgcgacacaagaggcagtgatccatatgtcgtccttcgcctcggcaagcaaggggtgtttgacaaagacactttcagtagagacgacccaatgggagatgcagaaatagacctggagcccttcatggaagttctgaacatggacccggagaacattcggaatggttccatcataaaaacaattcgaccatccaaccagaactgccttgctgatgagagtcacctatgctggaggaatggtaaatttgtccaggacattattctccgacttagaaacgtcgagagtggtgagctgcaagtgcaactgcaatgggtgaaaattcctggcaggcactaa

Protein seq

MDGLVGLLKIRVVRGINLAYRDTRGSDPYVVLRLGKQGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIRPSNQNCLADESHLCWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH

Function Protein C2-DOMAIN ABA-RELATED 4 [UniProtKB/Swiss-Prot:Q9LVH4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000540 OsLaMu_07g0000540.01 Chr07 421296 422373 - NAM
CDS seq

atggacggattggtaggcctcttgaaaatacgggtggtgcgtgggattaaccttgcctaccgcgacacaagaggcagtgatccatatgtcgtccttcgcctcggcaagcaaggggtgtttgacaaagacactttcagtagagacgacccaatgggagatgcagaaatagacctggagcccttcatggaagttctgaacatggacccggagaacattcggaatggttccatcataaaaacaattcgaccatccaaccagaactgccttgctgatgagagtcacctatgctggaggaatggtaaatttgtccaggacattattctccgacttagaaacgtcgagagtggtgagctgcaagtgcaactgcaatgggtgaaaattcctggcaggcactaa

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Protein seq

MDGLVGLLKIRVVRGINLAYRDTRGSDPYVVLRLGKQGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIRPSNQNCLADESHLCWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 2.170939 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0108400 RBH 0.0 0.000000 40.737000
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g01770 RBH 0.0 0.0 2.576369
Nipponbare | IRGSP 1.0 | RAP-db Os07g0108400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0000530 SBH 0.000000 0.000000 7.323530
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0000580 RBH 0.0 0.000000 19.665808
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0000510 RBH 0.0 0.0 125.662811
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0000510 RBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0000530 SBH 0.000000 1.961987 52.600170
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0007400 RBH 1.6057905 6.8333865 11.6775755
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0000520 SBH 0.0 0.093690 21.505369
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0005700 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0000540 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0000540 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0000550 RBH 0.000000 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0074500 RBH 0.000000 0.0 2.767355
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G000560 SBH 0.000000 1.797224 12.459339
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0000560 RBH 0.341816 8.864166 125.936493
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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