Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0108400 | OGI:07001140 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:451750-453710 | ||||||||
| Gene Symbol | SMCP1, OsSMCP1 | ||||||||||
| DNA seq | GAAACAGTATTTGTGATTGATTTGTTGCAAAAGCACAGGCAAACATGGTCCTATCGTTTGTACTATTTGATTATGTCATCCCAAGCTTTACTGATCATGCTCCCAATACATTTCGGCAACAACATTTTAACATCATTTTCCTTTCCTACAGACATTGACTAACCTGATGAACCCTTTGCTGGTCACAACCTCCACATCAAAACGTGCTTGACATGATTCATTTTTTGCACAGTATTTACAGCCCCAATGGTTGACATGATCCATTTCGCACAATATATGTTTTGGCATTCGGAAATGTCAATGATATCTCAGTAGCCAAGATCTCCCAATGGCCATGAGACACTTAGTGCCTGCCAGGAATTTTCACCCATTGCAGTTGCACTTGCAGCTCACCACTCTCGACGTTTCTAAGTCGGAGAATAATGTCCTGGACAAATTTACCATTCCTCCAGAATAGGTGACTCTCATCAGCAAGGCAGTTCTGGTTGGATGGTCGAATTGTTTTTATGATGGAACCATTCCGAATGTTCTCCGGGTCCATGTTCAGAACTTCCATGAAGGGCTCCAGGTCTATTTCTGCATCTCCCATTGGGTCGTCTCTACTGAAAGTGTCTTTGTCAAACACCCCCTGTTTATTTCAACAGAAGAAGAAAATCCGCAATGTGAGCATTCATTAAAAAAAAACAGGGTTGAACATGAAATATCATAATCAGTTAGTACACATGCTTGTAAGAAAACAACATCCACTCACAAGCTTAATCGGTGCAATAGGGTTCATGATCGACAAAGTTAGCTCTTCATGCCAAATAGGATTCACAGATTTCTTCTTTACACTAGTCTTCACTTTCTGTAATATGATCAAAACACAAAACTCGGTAAGACACTGAGAACAATATATACTCAAACAAAAGAGATGGAGATGAGGCAAATCGCTAGAGATATAAAAACAAAAAAGTAATCATACTTGCTTGCCGAGGCGAAGGACGACATATGGATCACTGCCTCTTGTGTCGCGGTAGGCAAGGTTAATCCCACGCACCACCCGTATTTTCAAGAGGCCTACCAATCCGTCCATAATTGGATTTAATTGTTGTTTAGTTCCTGTGGATTATCAGTTGATACTATTTTACAATGAGAGGCAATGTGGGGGCGAAGATGTGCCTAATTCAATAGGAGAATTAGGCGACTTCTTGCAACCCCTGTGCCTCTCGGTAGAATGCGCCTGTGTTTTTTCCCCCTTCTGTCCTCATCGGCCTATATAGTTGCAGCCTTGCAGGAAGGAGCCTAAAAAGGATTGCTCAGGACAGGGTGAATGAGGTGTGAGCCTCAACCGTAGGAGTTGAGCTGACCATTTCTTTTGTGGCCTGTATTGAAACCAAACTAATTGCTTCCATTTTTGGACATGTGGGAGTTCCTTATGTTCTTCCTTATTCTTTTTTGCCACAGTAGTATTTTTGTTCTTGGATTTCGATTAGCTCGGATAAGAAACCTGGATAAAGGTGTGACCTCTATAAAGGATCACATTTGGACAACACGTGCAAAACCTATAAATAGATATGGAAAAAGGCATGGAAGTTTCAATTTACCATATCTTTTTTTTTCTTTCCTTTAGAAATGTACTGTAATATTTGAGAAGCAAATGTATTATAGCCAGAAGAGGGAGACCCCTTCCATTTCCATCATGATTCATGAGAGGCAGGCTACAAAGTGTTATCCCAGCAACAAAACTTAAACAAAAAGGAACAAAGAGCAGAACACATGGCTGTTTTCGGCTTTTCGCATATATAGAGTGATGCCATCCCCTCACTCATTCGCCACCACAGATCAGGCCAGGTCCATAACAGCACCAAGTTTTTATCAACAATAGTTAAAAAAATCACCATATTTTCAAACAATGTTTCTGGAACAAAGTTTATGTGAGTAGCAAAATGTAAGGTAAATAAATTAAAGCAGCAAGTGTA
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| CDS seq | ATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAA
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| Protein seq | MDGLVGLLKIRVVRGINLAYRDTRGSDPYVVLRLGKQKVKTSVKKKSVNPIWHEELTLSIMNPIAPIKLGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIRPSNQNCLADESHLFWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH |
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| Function | GTPase activating protein 1 [UniProtKB/Swiss-Prot:Q6YWF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0108400 | Os07t0108400-01 | Chr07 | 451796 | 453710 | - | irgsp1_rep | ||
| CDS seq | ATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAA
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| Protein seq | MDGLVGLLKIRVVRGINLAYRDTRGSDPYVVLRLGKQKVKTSVKKKSVNPIWHEELTLSIMNPIAPIKLGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIRPSNQNCLADESHLFWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0108400 | Os07t0108400-02 | Chr07 | 451750 | 453009 | - | irgsp1_rep | ||
| CDS seq | ATGGACGGATTGGTAGGCCTCTTGAAAATACGGGTGGTGCGTGGGATTAACCTTGCCTACCGCGACACAAGAGGCAGTGATCCATATGTCGTCCTTCGCCTCGGCAAGCAAAAAGTGAAGACTAGTGTAAAGAAGAAATCTGTGAATCCTATTTGGCATGAAGAGCTAACTTTGTCGATCATGAACCCTATTGCACCGATTAAGCTTGGGGTGTTTGACAAAGACACTTTCAGTAGAGACGACCCAATGGGAGATGCAGAAATAGACCTGGAGCCCTTCATGGAAGTTCTGAACATGGACCCGGAGAACATTCGGAATGGTTCCATCATAAAAACAATTCGACCATCCAACCAGAACTGCCTTGCTGATGAGAGTCACCTATTCTGGAGGAATGGTAAATTTGTCCAGGACATTATTCTCCGACTTAGAAACGTCGAGAGTGGTGAGCTGCAAGTGCAACTGCAATGGGTGAAAATTCCTGGCAGGCACTAA
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| Protein seq | MDGLVGLLKIRVVRGINLAYRDTRGSDPYVVLRLGKQKVKTSVKKKSVNPIWHEELTLSIMNPIAPIKLGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPENIRNGSIIKTIRPSNQNCLADESHLFWRNGKFVQDIILRLRNVESGELQVQLQWVKIPGRH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0108400 | RBH | 0.0 | 0.000000 | 40.737000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01770 | RBH | 0.0 | 0.0 | 2.576369 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000530 | RBH | 0.000000 | 0.000000 | 7.323530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000580 | SBH | 0.0 | 0.000000 | 19.665808 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000510 | RBH | 0.0 | 0.0 | 125.662811 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000510 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000530 | RBH | 0.000000 | 1.961987 | 52.600170 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007400 | RBH | 1.6057905 | 6.8333865 | 11.6775755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000520 | RBH | 0.0 | 0.093690 | 21.505369 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0005700 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000540 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000550 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000590 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000540 | RBH | 0.000000 | 2.170939 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000560 | RBH | 0.000000 | 1.797224 | 12.459339 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000560 | RBH | 0.341816 | 8.864166 | 125.936493 |
