Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0006940 | OGI:06014680 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:5058760-5060444 | ||||||||
| Gene Symbol | OsSTA173 | ||||||||||
| DNA seq | agttatcaaggatatggcctgcgaaaattactaatgatccatggaatacatgcacacagctaacaacagatccttgcacacaggaatcctcaaatacatctcaagcacacctcttctatactacaataacttatgccatatagagctttgtatttcgtaacattatcccatcaaggtatcttcttgtcaattcctcaacttttaatcttccttcataatctatatctttccctaacatgccagccgcctcaatagtcaaaacttcaagtatagaggcactttccacgacatgtagcagagattcaagctcgcctgtcgatgcaacaaatccagtaatatgcatgttctttagatagccgtattcaccttgtggaagcctcctgataggctgataatacaagtgtgacaaagcatacgaattgaactgcaatgagtgaaaatgggaattgataagaagacttgtattgcatggataattaattgacagatcatcaaaatcttagtactgcattgctaacagccagaatgattaaagaagaaatatggaataaacgcatttcctgcaaataggaaaacatatagtactcacatgtatttctaacttctctatgcaaggactggccctgagaaaagaggccaaagagaggatgttgcccgaatcatgataatatagacgtaattttagttgtaaatatttcagatgagaaaacttgcacgtgttcttcagcagcgaggacacctgaaaaggtgatagtaagaaagaattgagcaaagaattgcatatgacttcaaaggtgtagcaacaaacctcgagaggaacatagacatccaaacagagcggctgaacacaaggaggcacacttgggagagtagtcagaggtacataggcatccaaactgagggactgaacacatggaagcatacttgggagtgtagtaagagcatcctcaagatgtacagagccaaaaaaatgaaggcttgcttccttcagtaccagagcatgcccaagatcaataggatgccgcatcccatcatacataaaagctttgaggttgatggcattaagttataacttggttatatcacagtatgtgactcgtaagtatagaaggcgcggcaatggatgtgtcacctttatttcaccaccaatatggcatctaactaaactcaaccattcaatattaaagcattgtgataacaaatcttgaagatccttctgagtagatcgtattaagtgaaggtcaagattccttaggtttagaaaaccactgaaatggggaggtagttccaaagatgcaaagctaagctgaatatgctgtagacgggagatgcttccattgtcgaaacgctcaaagggaaatctgtatcgatcaagaagaccaacaggattggttggcactaaatcaaaagccattttttttgtctgtgatgatacaacaaaatcaaccaaaccattgaggtgatcaactagcttgctgtcgaattcaaacttcacctcaaactcttcaacaatcttgccagagtgctgctgcaagattgcattaatattatccctggataccataacaccatcgaatcttagttttgtgcaacaagtccacatgtgcctccaatttcttgacaaaacactggtcctcacaacatccttcagtggcaatttttgagaaaattgtgcacagcaaatc
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| CDS seq | atgtggacttgttgcacaaaactaagattcgatggtgttatggtatccagggataatattaatgcaatcttgcagcagcactctggcaagattgttgaagagtttgaggtgaagtttgaattcgacagcaagctagttgatcacctcaatggtttggttgattttgttgtatcatcacagacaaaaaaaatggcttttgatttagtgccaaccaatcctgttggtcttcttgatcgatacagatttccctttgagcgtttcgacaatggaagcatctcccgtctacagcatattcagcttagctttgcatctttggaactacctccccatttcagtggttttctaaacctaaggaatcttgaccttcacttaatacgatctactcagaaggatcttcaagatttgttatcacaatgctttaatattgaatggttgagtttagttagatgccatattggtggtgaaataaagtccctcagtttggatgcctatgtacctctgactactctcccaagtgtgcctccttgtgttcagccgctctgtttggatgtctatgttcctctcgaggtttgttgctacacctttgaagtcatatgcaattctttgctcaattctttcttactatcaccttttcaggtgtcctcgctgctgaagaacacgtgcaagttttctcatctgaaatatttacaactaaaattacgtctatattatcatgattcgggcaacatcctctctttggcctcttttctcagggccagtccttgcatagagaagttagaaatacatttcaattcgtatgctttgtcacacttgtattatcagcctatcaggaggcttccacaaggtgaatacggctatctaaagaacatgcatattactggatttgttgcatcgacaggcgagcttgaatctctgctacatgtcgtggaaagtgcctctatacttgaagttttgactattgaggcggctggcatgttagggaaagatatagattatgaaggaagattaaaagttgaggaattgacaagaagataccttgatgggataatgttacgaaatacaaagctctatatggcataa
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| Protein seq | MWTCCTKLRFDGVMVSRDNINAILQQHSGKIVEEFEVKFEFDSKLVDHLNGLVDFVVSSQTKKMAFDLVPTNPVGLLDRYRFPFERFDNGSISRLQHIQLSFASLELPPHFSGFLNLRNLDLHLIRSTQKDLQDLLSQCFNIEWLSLVRCHIGGEIKSLSLDAYVPLTTLPSVPPCVQPLCLDVYVPLEVCCYTFEVICNSLLNSFLLSPFQVSSLLKNTCKFSHLKYLQLKLRLYYHDSGNILSLASFLRASPCIEKLEIHFNSYALSHLYYQPIRRLPQGEYGYLKNMHITGFVASTGELESLLHVVESASILEVLTIEAAGMLGKDIDYEGRLKVEELTRRYLDGIMLRNTKLYMA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0006940 | OsLaMu_06g0006940.01 | Chr06 | 5058760 | 5060444 | - | NAM | ||
| CDS seq | atgtggacttgttgcacaaaactaagattcgatggtgttatggtatccagggataatattaatgcaatcttgcagcagcactctggcaagattgttgaagagtttgaggtgaagtttgaattcgacagcaagctagttgatcacctcaatggtttggttgattttgttgtatcatcacagacaaaaaaaatggcttttgatttagtgccaaccaatcctgttggtcttcttgatcgatacagatttccctttgagcgtttcgacaatggaagcatctcccgtctacagcatattcagcttagctttgcatctttggaactacctccccatttcagtggttttctaaacctaaggaatcttgaccttcacttaatacgatctactcagaaggatcttcaagatttgttatcacaatgctttaatattgaatggttgagtttagttagatgccatattggtggtgaaataaagtccctcagtttggatgcctatgtacctctgactactctcccaagtgtgcctccttgtgttcagccgctctgtttggatgtctatgttcctctcgaggtttgttgctacacctttgaagtcatatgcaattctttgctcaattctttcttactatcaccttttcaggtgtcctcgctgctgaagaacacgtgcaagttttctcatctgaaatatttacaactaaaattacgtctatattatcatgattcgggcaacatcctctctttggcctcttttctcagggccagtccttgcatagagaagttagaaatacatttcaattcgtatgctttgtcacacttgtattatcagcctatcaggaggcttccacaaggtgaatacggctatctaaagaacatgcatattactggatttgttgcatcgacaggcgagcttgaatctctgctacatgtcgtggaaagtgcctctatacttgaagttttgactattgaggcggctggcatgttagggaaagatatagattatgaaggaagattaaaagttgaggaattgacaagaagataccttgatgggataatgttacgaaatacaaagctctatatggcataa
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| Protein seq | MWTCCTKLRFDGVMVSRDNINAILQQHSGKIVEEFEVKFEFDSKLVDHLNGLVDFVVSSQTKKMAFDLVPTNPVGLLDRYRFPFERFDNGSISRLQHIQLSFASLELPPHFSGFLNLRNLDLHLIRSTQKDLQDLLSQCFNIEWLSLVRCHIGGEIKSLSLDAYVPLTTLPSVPPCVQPLCLDVYVPLEVCCYTFEVICNSLLNSFLLSPFQVSSLLKNTCKFSHLKYLQLKLRLYYHDSGNILSLASFLRASPCIEKLEIHFNSYALSHLYYQPIRRLPQGEYGYLKNMHITGFVASTGELESLLHVVESASILEVLTIEAAGMLGKDIDYEGRLKVEELTRRYLDGIMLRNTKLYMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054656 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161300 | SBH | 1.406937 | 1.722493 | 4.482995 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g10140 | RBH | 0.139998 | 0.0 | 0.213144 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0161300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0007150 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006940 | RBH | 0.0 | 0.0 | 0.435386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006990 | RBH | 0.000000 | 0.0 | 3.557289 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006960 | RBH | 1.925038 | 0.000000 | 3.620246 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0087000 | RBH | 0.503022 | 1.8112755 | 1.6770515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006730 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0085900 | RBH | 0 | 0.0675565 | 0.011303 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007150 | RBH | 0.064121 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007070 | RBH | 0.000000 | 8.220837 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006820 | RBH | 0.107830 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007090 | RBH | 0.0 | 0.0 | 0.000000 |
