Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0003420 | OGI:06007290 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:2529527-2532097 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagattaggtggatccagctgatggaaatatatatactgagatagttctctgctccttgctccgagcaagtgaacagcatggaggaaggaggcaggagagggatcccttctctgctaaattcatcgtcatcagatgaacatatcgccactgatatcactcaggtgagctgatccctatcctctactgcactatcttctttctgatcttctccatcttcagttcttgctttttggggggtgaaattggttttggtctgaacatatatgtgtcagacagaattcatgctggtggtgtgaactgtgaagtttgaaggattagtacaactcaggttcattcttccttcagcttgtaggatggacgccactgatagagctgaaccggatcgtccgaaaagacggggtaaatgcccggattgttggcaaattggagtcataccaacccctctgctctgtcaaggatcgcagtgctctgaggtactgacaaatatgtacccatatgctatccattgttcaatgtttcaatatctctgctgatcacattgttaagttaggctatttcatgatcattttgatcaatggctcatactctgtattaccaattttcagaatgattgaggatgcagaggagaaaggtctgatctcaccaggcgttacgacgctagtcgagccgacaagtggtaatcttggaataggtgtggcatacaatgctctgctcaaaggttacaggttcgttgcagtcatgcctgctgagtattcacttgataagcaaatgttgttgacgtatctaggggccgaggttattttaactggtaaggatgtaaagcacaaatctttggtaattactataagtttttaactgttgaaatcattctcaaaatttgatatcggcatttggtgtcctgtcatttgtcaattgtggggaccacaagatactgaactctctaattcaatgcaatactgtttcagatcctacacttggttttcagggacaattagacaaagttgaacagatcaagaatgatatgcctaacgtacatcatcttgatcagtttaaaaatgcagcaaatcctgaagcacactttgtatggacaggtacctattcttacacaatgtaatgtaatgtaatctactagtaaaagagtactataaatagtagcaagccatatattttatttgcaatgatcattaactgtagaggattatactgtcctggattcaaaacaaaagggcctttgtccgtcataattcatacgatgaaattcatgaattgggtgggcttaatattcctgttatccatatcatgatttacgagtcagatagtgtgatcatattcaaatgttgcctatcctttccttctagggcctgagatttggaaggatacggcaggcaaagtagatatctttgtggctggttctggcacaggaggaacaatttcaggtgtagggaaatatttgaagatgaaaaacccagcagttaaagtaatttgtgttgagcctgcggaaagccctgtaatttcaggtaagtctctacaatatcacaagtatcacactgaacatgtcaaagaaaaagtatcacctcctatgataaaatgtttcgacaaacAaaaaaaaaatcttttgagaaatgaattgcctcggatatctaaaattgtgtcctgttggcttctacaataattttcctcacattgttttaggtggtaagccttcgcggcataaaattcagggaatgggtccaggctttgtaccaaaaaacctggatatctcaatcgtcgatgagatcatcacagtaactgcacaagatgcaatggctaatgcaaagaggctggcaagagaagagggtttacttgtgggcatatcatccggagctaatttggcagcttgtctgaaggttccaactgaactaactttcttgtgggcatatcaactttcgtttgtcctgattatagcttcccagcattataatcttgtattttcttccgctatatcgatagaaactttaggccatttggtgctgttcgtttgAaaaaaaaaaactttcttgcattcttttttcatgtaatctttgcttatctttgtaaggattttttaggtggcatcgaggaaagaatatgagggaaagatgattgtaaccattttccctagtggtggtgaaagatacatgaactctgacctctttgcacaagcaagggaggagtgcagcgccatgaccttttgatctcatggctttttcagttctattctactctgtatggaagccaaggtaggattttagcataaatatataagtacagttaagaactaaaattcaaggtaaaaatacattggtcacttatctaatccgcttattggatttggactcgttacatgttgatgcaggtggcttgtacactgatcagtgagcagagtgtgggggaaaataaagaaaagccggatgtgttgtacttgtttgttgtatgaaaatatgaaataagaggacaagccatttattattttttgtaaagaagactataatcttttgtcacatgtttactccataattttccctcagagcaatgtagtaaatttttttat
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| CDS seq | atggaggaaggaggcaggagagggatcccttctctgctaaattcatcgtcatcagatgaacatatcgccactgatatcactcagcttgtaggatggacgccactgatagagctgaaccggatcgtccgaaaagacggggtaaatgcccggattgttggcaaattggagtcataccaacccctctgctctgtcaaggatcgcagtgctctgagaatgattgaggatgcagaggagaaaggtctgatctcaccaggcgttacgacgctagtcgagccgacaagtggtaatcttggaataggtgtggcatacaatgctctgctcaaaggttacaggttcgttgcagtcatgcctgctgagtattcacttgataagcaaatgttgttgacgtatctaggggccgaggttattttaactgatcctacacttggttttcagggacaattagacaaagttgaacagatcaagaatgatatgcctaacgtacatcatcttgatcagtttaaaaatgcagcaaatcctgaagcacactttgtatggacagggcctgagatttggaaggatacggcaggcaaagtagatatctttgtggctggttctggcacaggaggaacaatttcaggtgtagggaaatatttgaagatgaaaaacccagcagttaaagtaatttgtgttgagcctgcggaaagccctgtaatttcaggtggtaagccttcgcggcataaaattcagggaatgggtccaggctttgtaccaaaaaacctggatatctcaatcgtcgatgagatcatcacagtaactgcacaagatgcaatggctaatgcaaagaggctggcaagagaagagggtttacttgtgggcatatcatccggagctaatttggcagcttgtctgaaggtggcatcgaggaaagaatatgagggaaagatgattgtaaccattttccctagtggtggtgaaagatacatgaactctgacctctttgcacaagcaagggaggagtgcagcgccatgaccttttga
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| Protein seq | MEEGGRRGIPSLLNSSSSDEHIATDITQLVGWTPLIELNRIVRKDGVNARIVGKLESYQPLCSVKDRSALRMIEDAEEKGLISPGVTTLVEPTSGNLGIGVAYNALLKGYRFVAVMPAEYSLDKQMLLTYLGAEVILTDPTLGFQGQLDKVEQIKNDMPNVHHLDQFKNAANPEAHFVWTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGPGFVPKNLDISIVDEIITVTAQDAMANAKRLAREEGLLVGISSGANLAACLKVASRKEYEGKMIVTIFPSGGERYMNSDLFAQAREECSAMTF |
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| Function | Cysteine synthase, chloroplastic/chromoplastic [UniProtKB/Swiss-Prot:P32260] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0003420 | OsLaMu_06g0003420.01 | Chr06 | 2529527 | 2532097 | + | NAM | ||
| CDS seq | atggaggaaggaggcaggagagggatcccttctctgctaaattcatcgtcatcagatgaacatatcgccactgatatcactcagcttgtaggatggacgccactgatagagctgaaccggatcgtccgaaaagacggggtaaatgcccggattgttggcaaattggagtcataccaacccctctgctctgtcaaggatcgcagtgctctgagaatgattgaggatgcagaggagaaaggtctgatctcaccaggcgttacgacgctagtcgagccgacaagtggtaatcttggaataggtgtggcatacaatgctctgctcaaaggttacaggttcgttgcagtcatgcctgctgagtattcacttgataagcaaatgttgttgacgtatctaggggccgaggttattttaactgatcctacacttggttttcagggacaattagacaaagttgaacagatcaagaatgatatgcctaacgtacatcatcttgatcagtttaaaaatgcagcaaatcctgaagcacactttgtatggacagggcctgagatttggaaggatacggcaggcaaagtagatatctttgtggctggttctggcacaggaggaacaatttcaggtgtagggaaatatttgaagatgaaaaacccagcagttaaagtaatttgtgttgagcctgcggaaagccctgtaatttcaggtggtaagccttcgcggcataaaattcagggaatgggtccaggctttgtaccaaaaaacctggatatctcaatcgtcgatgagatcatcacagtaactgcacaagatgcaatggctaatgcaaagaggctggcaagagaagagggtttacttgtgggcatatcatccggagctaatttggcagcttgtctgaaggtggcatcgaggaaagaatatgagggaaagatgattgtaaccattttccctagtggtggtgaaagatacatgaactctgacctctttgcacaagcaagggaggagtgcagcgccatgaccttttga
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| Protein seq | MEEGGRRGIPSLLNSSSSDEHIATDITQLVGWTPLIELNRIVRKDGVNARIVGKLESYQPLCSVKDRSALRMIEDAEEKGLISPGVTTLVEPTSGNLGIGVAYNALLKGYRFVAVMPAEYSLDKQMLLTYLGAEVILTDPTLGFQGQLDKVEQIKNDMPNVHHLDQFKNAANPEAHFVWTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGPGFVPKNLDISIVDEIITVTAQDAMANAKRLAREEGLLVGISSGANLAACLKVASRKEYEGKMIVTIFPSGGERYMNSDLFAQAREECSAMTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 20.760008 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0149700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05690 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0149700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0003730 | RBH | 0.0 | 45.672901 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0003610 | RBH | 0.0 | 5.146124 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0003560 | SBH | 0.0 | 29.133327 | 6.809092 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019460 | SBH | 0.845020 | 0.063212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019890 | RBH | 23.270489 | 0.500802 | 29.218830 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0042300 | RBH | 0 | 9.5541235 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019360 | SBH | 1.876882 | 0.087896 | 2.189108 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0044500 | RBH | 6.684855 | 8.7087995 | 11.309374 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019810 | SBH | 0.301598 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0003540 | RBH | 0.0 | 14.034772 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019430 | SBH | 23.203489 | 0.756957 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0003580 | RBH | 0.000000 | 1.261752 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003430 | RBH | 0.438516 | 4.201398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003430 | RBH | 0.0 | 14.064995 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019670 | RBH | 3.447290 | 1.319442 | 5.884802 |
