Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0019170 | OGI:05060010 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:22884515-22886707 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttcaggttttattccctcaaaagcgacaggaaagagcagataaaaaccataattatcattaataaagcaagggtcaatgagagggtgaccaatgctaataccctcaactgaacactagagagccttgacaaaaagaaaaacagagacaatatgctgctgctacgtgctatatctccaaataatacttgcatgacaataataacttgactaatagtacatcaacaaaaacggtgtctagctggtagtagtacccatcctgtgcctcctcccatagcacaggagataatcaatggagtatcaaatatcaattgtgaactaattatttaaccttggtcttggtcttatgtacacagatgcgaaatgcagagatgccatgtccaatatgcttcttcttcttcttctttttcttctatctcgtgaTTCttcttcttcttcttcttcctctcatcatccgggatacacggtagtagggagcttaatttagcagcagcgcaatgcttggctactgtgctgttactacttgtccttcgtgctgttgcgatcatttcgttttcagaactccattgatggttggaagcaagagcacgagttgcatctccctcctcgagcacaccaagagacgagagcattttcatggttggtcgtgggttgctgctccaggaacagggttgtcaaccgagaggctgcatcagctggccgcattgcatctgcaccagaacggagtcgtcgaggcggccgccgccggcgacgtgcgaattgccggcctcgatcttcacctgggcgtagggatggggcatgaagtggtggtgcccggcgccacggccgagcggcggcggcggaggcttgccgtcgacgagcacgccgaactgctccgagacggcggcggcggcggaggaggagtgcgcggtgagcacggacggcggcggcgacggcgaggggttgccatggtcgtcgtcggggaggttgacggtggtgatgtcgtggatgctggagcggcgcttgtccttgccgccggagttgagccggatgaagtacttctgcgcgtggctggccacctgcgtcggcgtccggctcgtcacgaagttgcgggagatgttcctccagtcacctctgccgtacttcttcagccccatcaagaacaacctggaacaaagaaagcctcaccaaattcagctccaagaacacgccatggcttcatcagcttggtccaattccatcaaagattctgagagttggggggtggcttacttgtgctcctcctctgtccacggcacgcccttcttgcgctcctggtcagggccgcgcgcgcgcttgccgccgaccatgtagcaggagcgcttgaacccaaggccggcggggtcatcgccgccgtcccagtcaagagtgaacccggagccgccgccgccgccggcggcgccgtagtgggggaaggggacgaggccggcctcgatgaagcagacgtcgttctcgaggtcgtcgtagtgcgtcatgacgtcggccaccgtcttgccgggcagcagcagcgccacccgctcccacctctccgggtcgttccggtcgagcgccgccagcgcctgctcgaacaccttgttctcctcctgcgaccacgctccgccgccgccgcgccggtccggcaagaaccacccgcccgccgccgcagcctggccgacgaagtagtgcgccggcgccggcgggagcacctccatgtacgactccatcatctccgcgaccgcgaggcggctggctggctggccgggccaaccgaccaagatttttcacctttctttctcaaaagcgagctcttgggaggtggaagaagagggggaggggagatggggggcggcagagaagggcggtatttatggatgctacagcatcgattccggcagatgccaaagtggccacagatgattcggcctccaccttgagacgccgcttaaaagaaatcgaggcgttcgttgattggcccttggtggagtttgtggcgtctcaaccaaacaaaagcctcctcctcctcctcctcggcttctctcactcctgcgagaagaggagggcagagcacaggagaagctgagctgaggaggagcttggttGgggtttcgcccgtgtgcgcgtgtgggtgttggtccaggctgggagaaataataatagggaaacttggtgcctttcctgtgcagttgcaggcaacgttgc
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| CDS seq | atgatggagtcgtacatggaggtgctcccgccggcgccggcgcactacttcgtcggccaggctgcggcggcgggcgggtggttcttgccggaccggcgcggcggcggcggagcgtggtcgcaggaggagaacaaggtgttcgagcaggcgctggcggcgctcgaccggaacgacccggagaggtgggagcgggtggcgctgctgctgcccggcaagacggtggccgacgtcatgacgcactacgacgacctcgagaacgacgtctgcttcatcgaggccggcctcgtccccttcccccactacggcgccgccggcggcggcggcggctccgggttcactcttgactgggacggcggcgatgaccccgccggccttgggttcaagcgctcctgctacatggtcggcggcaagcgcgcgcgcggccctgaccaggagcgcaagaagggcgtgccgtggacagaggaggagcacaagttgttcttgatggggctgaagaagtacggcagaggtgactggaggaacatctcccgcaacttcgtgacgagccggacgccgacgcaggtggccagccacgcgcagaagtacttcatccggctcaactccggcggcaaggacaagcgccgctccagcatccacgacatcaccaccgtcaacctccccgacgacgaccatggcaacccctcgccgtcgccgccgccgtccgtgctcaccgcgcactcctcctccgccgccgccgccgtctcggagcagttcggcgtgctcgtcgacggcaagcctccgccgccgccgctcggccgtggcgccgggcaccaccacttcatgccccatccctacgcccaggtgaagatcgaggccggcaattcgcacgtcgccggcggcggccgcctcgacgactccgttctggtgcagatgcaatgcggccagctgatgcagcctctcggttga
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| Protein seq | MMESYMEVLPPAPAHYFVGQAAAAGGWFLPDRRGGGGAWSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVMTHYDDLENDVCFIEAGLVPFPHYGAAGGGGGSGFTLDWDGGDDPAGLGFKRSCYMVGGKRARGPDQERKKGVPWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPDDDHGNPSPSPPPSVLTAHSSSAAAAVSEQFGVLVDGKPPPPPLGRGAGHHHFMPHPYAQVKIEAGNSHVAGGGRLDDSVLVQMQCGQLMQPLG |
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| Function | Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0019170 | OsLaMu_05g0019170.01 | Chr05 | 22884515 | 22886707 | - | NAM | ||
| CDS seq | atgatggagtcgtacatggaggtgctcccgccggcgccggcgcactacttcgtcggccaggctgcggcggcgggcgggtggttcttgccggaccggcgcggcggcggcggagcgtggtcgcaggaggagaacaaggtgttcgagcaggcgctggcggcgctcgaccggaacgacccggagaggtgggagcgggtggcgctgctgctgcccggcaagacggtggccgacgtcatgacgcactacgacgacctcgagaacgacgtctgcttcatcgaggccggcctcgtccccttcccccactacggcgccgccggcggcggcggcggctccgggttcactcttgactgggacggcggcgatgaccccgccggccttgggttcaagcgctcctgctacatggtcggcggcaagcgcgcgcgcggccctgaccaggagcgcaagaagggcgtgccgtggacagaggaggagcacaagttgttcttgatggggctgaagaagtacggcagaggtgactggaggaacatctcccgcaacttcgtgacgagccggacgccgacgcaggtggccagccacgcgcagaagtacttcatccggctcaactccggcggcaaggacaagcgccgctccagcatccacgacatcaccaccgtcaacctccccgacgacgaccatggcaacccctcgccgtcgccgccgccgtccgtgctcaccgcgcactcctcctccgccgccgccgccgtctcggagcagttcggcgtgctcgtcgacggcaagcctccgccgccgccgctcggccgtggcgccgggcaccaccacttcatgccccatccctacgcccaggtgaagatcgaggccggcaattcgcacgtcgccggcggcggccgcctcgacgactccgttctggtgcagatgcaatgcggccagctgatgcagcctctcggttga
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| Protein seq | MMESYMEVLPPAPAHYFVGQAAAAGGWFLPDRRGGGGAWSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVMTHYDDLENDVCFIEAGLVPFPHYGAAGGGGGSGFTLDWDGGDDPAGLGFKRSCYMVGGKRARGPDQERKKGVPWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPDDDHGNPSPSPPPSVLTAHSSSAAAAVSEQFGVLVDGKPPPPPLGRGAGHHHFMPHPYAQVKIEAGNSHVAGGGRLDDSVLVQMQCGQLMQPLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.392820 | 7.945168 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0449900 | RBH | 0.189356 | 2.555245 | 1.556065 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g37730 | RBH | 0.232027 | 1.517541 | 0.366253 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0449900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019210 | RBH | 0.0 | 2.498610 | 3.960706 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019150 | RBH | 0.183785 | 0.511131 | 2.095224 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019040 | RBH | 0.000000 | 8.244645 | 8.574836 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019040 | RBH | 0.101910 | 0.135336 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019210 | RBH | 3.008148 | 1.653782 | 13.228534 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0339900 | RBH | 6.8130405 | 8.4159445 | 9.9021865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018770 | RBH | 0.138710 | 0.420468 | 1.474657 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0349900 | RBH | 6.900539 | 4.019488 | 26.537607 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019040 | RBH | 0.228468 | 0.174582 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018990 | RBH | 0.174424 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019070 | RBH | 0.762110 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019150 | RBH | 0.329437 | 0.650789 | 1.643216 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039640 | RBH | 0.0 | 2.748106 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018650 | RBH | 0.000000 | 0.000000 | 3.212616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019010 | RBH | 0.454565 | 7.536989 | 6.376449 |
