Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_05g0019040 OGI:05060010 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr05:22683390-22685591
Gene Symbol -
DNA seq

TTCAGGTTTTATTCCCTCAAAAGCGACAGGAAAGAGCAGATAAAAACCATAATTATCATTAATAAAGCAAGGGTCAATGAGAGGGTGACCAATGCTAATACCCTCAACTGAACACTAGAGAGCCTTGACAAAAAGAAAAACAGAGACAATATGCTGCTGCTACGTGCTATATCTCCAAATAATACTTGCATGACAATAATAACTTGACTAATAGTACATCAACAAAAACGGTGTCTAGCTGGTAGTAGTACCCATCCTGTGCCTCCTCCCATAGCACAGGAGATAATCAATGGAGTATCAAATATCAATTGTGAACTAATTATTTAACCTTGGTCTTGGTCTTATGTACACAGATGCGAAATGCAGAGATGCCATGTCCAATATGCTTCTTCTTCTTCTTCTTCTTTTTCTTCTATCTCGTGATTCTTCTTCTTCTTCTTCTTCTTCCTCTCATCATCCGGGATACACGGTAGTAGGGAGCTTAATTTAGCAGCAGCGCAATGCCTGGCTACTGTGCTGTTACTACTTGTCCTTCGTGCTGTTGCGATCATTTCGTTTTCAGAACTCCATTGATGGTTGGAAGCAAGAGCACGAGTTGCATCTCCCTCCTCGAGCACACCAAGAGACGAGAGCATTTTCATGGTTGGTCGTGGGTTGCTGCTCCAGGAACAGGGTTGTCAACCGAGAGGCTGCATCAGCTGGCCGCATTGCATCTGCACCAGAACGGAGTCGTCGAGGCGGCCGCCGCCGGCGACGTGCGAATTGCCGGCCTCGATCTTCACCTGGGCGTAGGGATGGGGCATGAAGTGGTGGTGCCCGGCGCCACGGCCGAGCGGCGGCGGCGGAGGCTTGCCGTCGACGAGCACGCCGAACTGCTCCGAGACGGCGGCGGCGGAGGAGGAGGAGTGCGCGGTGAGCACGGACGGCGGCGGCGACGGCGAGGGGTTGCCGTGGTCGTCGTCGGGGAGGTTGACGGTGGTGATGTCGTGGATGCTGGAGCGGCGCTTGTCCTTGCCGCCGGAGTTGAGCCGGATGAAGTACTTCTGCGCGTGGCTGGCCACCTGCGTCGGCGTCCGGCTCGTCACGAAGTTGCGGGAGATGTTCCTCCAGTCACCTCTGCCGTACTTCTTCAGCCCCATCAAGAACAACCTGGAACAAAGAAAGCCTCACCAAATTCAGCTCCAAGAACACGCCATGGCTTCATCAGCTTGGTCCAATTCCATCAAAGATTCTGAGAGTTGGGGGGTGGCTTACTTGTGCTCCTCCTCTGTCCACGGCACGCCCTTCTTGCGCTCCTGGTCAGGGCCGCGCGCGCGCTTGCCGCCGACCATGTAGCAGGAGCGCTTGAACCCAAGGCCGGCGGGGTCATCGCCGCCGTCCCAGTCAAGAGTGAACCCGGAGCCGCCGCCGCCGCCGGCGGCGCCGTAGTGGGGGAAGGGGACGAGGCCGGCCTCGATGAAGCAGACGTCGTTCTCGAGGTCGTCGTAGTGCGTCATGACGTCGGCCACCGTCTTGCCGGGCAGCAGCAGCGCCACCCGCTCCCACCTCTCCGGGTCGTTCCGGTCGAGCGCCGCCAGCGCCTGCTCGAACACCTTGTTCTCCTCCTGCGACCACGCTCCGCCGCCGCCGCGCCGGTCCGGCAAGAACCACCCGCCCGCCGCCGCAGCCTGGCCGACGAAGTAGTGCGCCGGCGCCGGCGGGAGCACCTCCATGTACGACTCCTTCATCATCTCCGCGACCGCGAGGCGGCTGGCTGGCTGGCCGGGCCAACCGACCAAGATTTTTCACCTTTCTTTCTCAAAAGCGAGCTCTTGGGAGGTGGAAGAAGAGGGGGAGGGGAGATGGGGGGCGGCAGAGAAGGGCGGTATTTATGGATGCTACAGCATCGATTCCGGCAGATGCCAAAGTGGCCACAGATGATTCGGCCTCCACCTTGAGACGCCGCTTAAAAGAAATCGAGGCGTTCGTTGATTGGCCCTTGGTGGAGTTTGTGGCGTCTCAACCAAACAAAAGCCTCCTCCTCCTCCTCCTCGGCTTCTCTCACTCCTGCGAGAAGAGGAGGGCAGAGCACAGGAGAAGCTGAGCTGAGGAGGAGCTTGGTTGGGGTTTCGCCCGTGTGCGCGTGTGGGTGTTGGTCCAGGCTGGGAGAAATAATAATAGGGAAACTTGGTGCCTTTCCTGTGCAGTTGCAGGCAACGTTGC

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CDS seq

ATGATGAAGGAGTCGTACATGGAGGTGCTCCCGCCGGCGCCGGCGCACTACTTCGTCGGCCAGGCTGCGGCGGCGGGCGGGTGGTTCTTGCCGGACCGGCGCGGCGGCGGCGGAGCGTGGTCGCAGGAGGAGAACAAGGTGTTCGAGCAGGCGCTGGCGGCGCTCGACCGGAACGACCCGGAGAGGTGGGAGCGGGTGGCGCTGCTGCTGCCCGGCAAGACGGTGGCCGACGTCATGACGCACTACGACGACCTCGAGAACGACGTCTGCTTCATCGAGGCCGGCCTCGTCCCCTTCCCCCACTACGGCGCCGCCGGCGGCGGCGGCGGCTCCGGGTTCACTCTTGACTGGGACGGCGGCGATGACCCCGCCGGCCTTGGGTTCAAGCGCTCCTGCTACATGGTCGGCGGCAAGCGCGCGCGCGGCCCTGACCAGGAGCGCAAGAAGGGCGTGCCGTGGACAGAGGAGGAGCACAAGTTGTTCTTGATGGGGCTGAAGAAGTACGGCAGAGGTGACTGGAGGAACATCTCCCGCAACTTCGTGACGAGCCGGACGCCGACGCAGGTGGCCAGCCACGCGCAGAAGTACTTCATCCGGCTCAACTCCGGCGGCAAGGACAAGCGCCGCTCCAGCATCCACGACATCACCACCGTCAACCTCCCCGACGACGACCACGGCAACCCCTCGCCGTCGCCGCCGCCGTCCGTGCTCACCGCGCACTCCTCCTCCTCCGCCGCCGCCGTCTCGGAGCAGTTCGGCGTGCTCGTCGACGGCAAGCCTCCGCCGCCGCCGCTCGGCCGTGGCGCCGGGCACCACCACTTCATGCCCCATCCCTACGCCCAGGTGAAGATCGAGGCCGGCAATTCGCACGTCGCCGGCGGCGGCCGCCTCGACGACTCCGTTCTGGTGCAGATGCAATGCGGCCAGCTGATGCAGCCTCTCGGTTGA

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Protein seq

MMKESYMEVLPPAPAHYFVGQAAAAGGWFLPDRRGGGGAWSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVMTHYDDLENDVCFIEAGLVPFPHYGAAGGGGGSGFTLDWDGGDDPAGLGFKRSCYMVGGKRARGPDQERKKGVPWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPDDDHGNPSPSPPPSVLTAHSSSSAAAVSEQFGVLVDGKPPPPPLGRGAGHHHFMPHPYAQVKIEAGNSHVAGGGRLDDSVLVQMQCGQLMQPLG

Function Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_05g0019040 OsARC_05g0019040.01 Chr05 22683390 22685591 - NAM
CDS seq

ATGATGAAGGAGTCGTACATGGAGGTGCTCCCGCCGGCGCCGGCGCACTACTTCGTCGGCCAGGCTGCGGCGGCGGGCGGGTGGTTCTTGCCGGACCGGCGCGGCGGCGGCGGAGCGTGGTCGCAGGAGGAGAACAAGGTGTTCGAGCAGGCGCTGGCGGCGCTCGACCGGAACGACCCGGAGAGGTGGGAGCGGGTGGCGCTGCTGCTGCCCGGCAAGACGGTGGCCGACGTCATGACGCACTACGACGACCTCGAGAACGACGTCTGCTTCATCGAGGCCGGCCTCGTCCCCTTCCCCCACTACGGCGCCGCCGGCGGCGGCGGCGGCTCCGGGTTCACTCTTGACTGGGACGGCGGCGATGACCCCGCCGGCCTTGGGTTCAAGCGCTCCTGCTACATGGTCGGCGGCAAGCGCGCGCGCGGCCCTGACCAGGAGCGCAAGAAGGGCGTGCCGTGGACAGAGGAGGAGCACAAGTTGTTCTTGATGGGGCTGAAGAAGTACGGCAGAGGTGACTGGAGGAACATCTCCCGCAACTTCGTGACGAGCCGGACGCCGACGCAGGTGGCCAGCCACGCGCAGAAGTACTTCATCCGGCTCAACTCCGGCGGCAAGGACAAGCGCCGCTCCAGCATCCACGACATCACCACCGTCAACCTCCCCGACGACGACCACGGCAACCCCTCGCCGTCGCCGCCGCCGTCCGTGCTCACCGCGCACTCCTCCTCCTCCGCCGCCGCCGTCTCGGAGCAGTTCGGCGTGCTCGTCGACGGCAAGCCTCCGCCGCCGCCGCTCGGCCGTGGCGCCGGGCACCACCACTTCATGCCCCATCCCTACGCCCAGGTGAAGATCGAGGCCGGCAATTCGCACGTCGCCGGCGGCGGCCGCCTCGACGACTCCGTTCTGGTGCAGATGCAATGCGGCCAGCTGATGCAGCCTCTCGGTTGA

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Protein seq

MMKESYMEVLPPAPAHYFVGQAAAAGGWFLPDRRGGGGAWSQEENKVFEQALAALDRNDPERWERVALLLPGKTVADVMTHYDDLENDVCFIEAGLVPFPHYGAAGGGGGSGFTLDWDGGDDPAGLGFKRSCYMVGGKRARGPDQERKKGVPWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKYFIRLNSGGKDKRRSSIHDITTVNLPDDDHGNPSPSPPPSVLTAHSSSSAAAVSEQFGVLVDGKPPPPPLGRGAGHHHFMPHPYAQVKIEAGNSHVAGGGRLDDSVLVQMQCGQLMQPLG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.101910 0.135336 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0449900 RBH 0.189356 2.555245 1.556065
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g37730 RBH 0.232027 1.517541 0.366253
Nipponbare | IRGSP 1.0 | RAP-db Os05g0449900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0019210 RBH 0.0 2.498610 3.960706
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0019150 RBH 0.183785 0.511131 2.095224
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0019040 RBH 0.000000 8.244645 8.574836
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0039980 RBH 0.000000 0.169440 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0019210 RBH 3.008148 1.653782 13.228534
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0339900 RBH 6.8130405 8.4159445 9.9021865
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0018770 RBH 0.138710 0.420468 1.474657
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0349900 RBH 6.900539 4.019488 26.537607
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0019040 RBH 0.228468 0.174582 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0018990 RBH 0.174424 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0019070 RBH 0.762110 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0019150 RBH 0.329437 0.650789 1.643216
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0019170 RBH 0.392820 7.945168 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G018650 RBH 0.000000 0.000000 3.212616
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0019010 RBH 0.454565 7.536989 6.376449
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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