Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0011700 | OGI:05038420 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:14921548-14924943 | ||||||||
| Gene Symbol | OsFbox255, Os_F0067 | ||||||||||
| DNA seq | ggcatagcaaatcaaaccataattttgttggtgccaattctgaacacataaaatgctactgaaatgaaaaatattgtgcatggcctggtaatgcttagcctaatgttcagttcactttagtagaaagcaagtcagggcatcagtcgttatgtcttataccaggaaaccttgagtacataattcctacgagtcaacttcacaattgacaagtggactaaataaatagagggtcagcttccagtttctacattgggccattggcacatatcttcataggccacacagccaccaccaccacatacaaaatggaagatcatgcaccagcaatccatctctgcgccttaccaataagagtcaaagtctagatacctgcaggagaacaattccatcagtcattctggtatttacagtcacaaagttatatcactttttttttttggtgcaatgcaaactgcaactactattttcagcattgtgaaccgcacatcaaatttccaaagttgaataatgtcagtattattaccaggcaaaaacaaaaagaagaaacagtgaacaacgatagaggaacaattgaattgttggaactattctcgaactttggctacatctatctagcaactaaaggattactacttcactgcttcattttggcagatgaggggcacaaccacacatagcaggtagaaagtagaaacacctgtttctagttcatacgtattctttcagaaatttaagaaccaatcaataattactatgttcaaattaaaagttgtcggagaggcataagtacaccagccatgtatgattactaccgtttgtgattgtacactcaactctttctaatgtgtatctcaatatctcataagtgaaacctcttttggtcaacaaatatcatttatcttagcatggcactaaaacaaaccttaccagtttttcttaaaccataattcctgccattgaaaaatttagtactaagaaatagaaaaactatgaacattcagaatgcaagtgagggatctagttaatttcatcttgaactagagctccaagcatctatcaaggaattctttactgtagttagttatctattttattttagaaatacggtggtcatctgacAaaatcataatcagacagatacttctttaatcacaaatcaccatgcaaagccggctgtgtttggaggtgggtgttgggaacccatctcccatgtacggaaaacggagcggtccattagcgcgtgattagttaagtattagctaTttttttaaaaaaatggatcaatatgatttttgtaaagaacttttgtatagaaattttttgcaaaaaacgcaccgtttagcagtttgaaaagcgtgcgcacggaaaacgagatgggagtgttgggaacttcctcttgcaaacacaccctaacccaaaatagtagactccacacattaaaaaaacacacgtactggagatatcacaaatgtaaactgaataaaattctaaagggaagcaaatattcctcgaaaatttatgttaataaaccttataactatgggtgcacaagttaactaaaattattctgctgcactgaccgtgtgtatataaatggactagagtaatgcatcctcaagctaacataatctagtaaaaaaaaaattagaacttcgttgacaagcagaatgttatcctagaaaaaagataatacAaaaaatatatgtatatatatttcttcctggtgcaaattaatacatttctatgcaggtgcaaattaatttcttactggtgatgcttctgactttttaccctcttttgacaagactgaacattaaTttttcgagtaaataaaaacaaaataccatgcaattattttccatgacaaatctaaatacttctacatcttgcaatgttcaaaattcaaaacaaggtggaccgcaaggcttctaaaatgtcatctcgctcaaacaggtattgaatgAaaaaaaaaacagtgttaccttctgaaatgagcgagcaaattacttatttgagacgccagatgattcaaatctagattctgtgctttttatttcgtgtttatacaactacacctattaatctgttatgcagttaaatgctgaaaacataagtacctgcaacataagtacttgcgtagggatgaattggggcgatgacacaactttcccaaactttcttggcctgcaacgaatcaagttggagcatgaagacactgtgagcagcccatacaaacatcacctttatatcctgagcataccccagctttgttacatactctacattcaacctaatctccgggttaagaacattcttcagctcatacgtcttctgcagcacccacttggcaacaccttcagaacagactttcctctcccacatttgaaggcttccgcgagagaaagtggcgacgcgaagacaatcaccttctgtcagccaggtctgagtgtagcaatttggatcggaatcggagggccactcaatcacggcgggggtttgatcatccaaatcaaactgaagaatggtactcccatgatcaccagaagccatccaatacagggcatggccaacaagtatgccaggatcacgaaagaaaaacaccaagaagggagcagctactgagatgagatcactccatttgccggactccgagcagtaaacgcaggcgaacatctgtgtgttgttgccggcgacgcctaccaacaccaccttgaaggggcaagagctgaacccgtcgtcggcattggcagcagacagcactgccccattccaaatgatcttctccttgccgtcaatctccggcggaacggccacccggcggtggtcgccggtgtcggggacccacacaaggatctcattcttggcccggttgaagaggaggacgcggccatggcggcagccgtagaagcgccactggccgccctcgtcctcggcgagccgcaacctgaagcgctcccgtgggatgagatccggcggatccagaacggaccggaagaaggggtatccgaggtagtcctcgaagacgccgatgaggggtggattccggtggcgggcgcggaagcggcggtggaaggcggggtcggtgacgaggcggcgccagcgcttgcagacgagggaggcgcgggggagcgaggagggacgcggcgggaggcggaggaggatctccgagaggaggtcgtcgtcgtccggcagggtcaccggcggcgccactgaggtgccgcggcgacggcggaggcggttcatctcgcacgcagcgttggggtttggcttgggggcggcggtgcggtggtggggaagagctggtgggccggggctggcggcggccggcgccggcgccggcgaacggtggatggtgtggcacagtggcagtctgtttcgccttctcctcggccaatc
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| CDS seq | atgaaccgcctccgccgtcgccgcggcacctcagtggcgccgccggtgaccctgccggacgacgacgacctcctctcggagatcctcctccgcctcccgccgcgtccctcctcgctcccccgcgcctccctcgtctgcaagcgctggcgccgcctcgtcaccgaccccgccttccaccgccgcttccgcgcccgccaccggaatccacccctcatcggcgtcttcgaggactacctcggataccccttcttccggtccgttctggatccgccggatctcatcccacgggagcgcttcaggttgcggctcgccgaggacgagggcggccagtggcgcttctacggctgccgccatggccgcgtcctcctcttcaaccgggccaagaatgagatccttgtgtgggtccccgacaccggcgaccaccgccgggtggccgttccgccggagattgacggcaaggagaagatcatttggaatggggcagtgctgtctgctgccaatgccgacgacgggttcagctcttgccccttcaaggtggtgttggtaggcgtcgccggcaacaacacacagatgttcgcctgcgtttactgctcggagtccggcaaatggagtgatctcatctcagtagctgctcccttcttggtgtttttctttcgtgatcctggcatacttgttggccatgccctgtattggatggcttctggtgatcatgggagtaccattcttcagtttgatttggatgatcaaacccccgccgtgattgagtggccctccgattccgatccaaattgctacactcagacctggctgacagaaggtgattgtcttcgcgtcgccactttctctcgcggaagccttcaaatgtgggagaggaaagtctgttctgaaggtgttgccaagtgggtgctgcagaagacgtatgagctgaagaatgttcttaacccggagattaggttgaatgtagagtatgtaacaaagctggggtatgctcaggatataaaggtgatgtttgtatgggctgctcacagtgtcttcatgctccaacttgattcgttgcaggccaagaaagtttgggaaagttgtgtcatcgccccaattcatccctacgcaagtacttatgttgcaggtatctag
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| Protein seq | MNRLRRRRGTSVAPPVTLPDDDDLLSEILLRLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPLIGVFEDYLGYPFFRSVLDPPDLIPRERFRLRLAEDEGGQWRFYGCRHGRVLLFNRAKNEILVWVPDTGDHRRVAVPPEIDGKEKIIWNGAVLSAANADDGFSSCPFKVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILVGHALYWMASGDHGSTILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGDCLRVATFSRGSLQMWERKVCSEGVAKWVLQKTYELKNVLNPEIRLNVEYVTKLGYAQDIKVMFVWAAHSVFMLQLDSLQAKKVWESCVIAPIHPYASTYVAGI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0011700 | OsLaMu_05g0011700.01 | Chr05 | 14921548 | 14924943 | - | NAM | ||
| CDS seq | atgaaccgcctccgccgtcgccgcggcacctcagtggcgccgccggtgaccctgccggacgacgacgacctcctctcggagatcctcctccgcctcccgccgcgtccctcctcgctcccccgcgcctccctcgtctgcaagcgctggcgccgcctcgtcaccgaccccgccttccaccgccgcttccgcgcccgccaccggaatccacccctcatcggcgtcttcgaggactacctcggataccccttcttccggtccgttctggatccgccggatctcatcccacgggagcgcttcaggttgcggctcgccgaggacgagggcggccagtggcgcttctacggctgccgccatggccgcgtcctcctcttcaaccgggccaagaatgagatccttgtgtgggtccccgacaccggcgaccaccgccgggtggccgttccgccggagattgacggcaaggagaagatcatttggaatggggcagtgctgtctgctgccaatgccgacgacgggttcagctcttgccccttcaaggtggtgttggtaggcgtcgccggcaacaacacacagatgttcgcctgcgtttactgctcggagtccggcaaatggagtgatctcatctcagtagctgctcccttcttggtgtttttctttcgtgatcctggcatacttgttggccatgccctgtattggatggcttctggtgatcatgggagtaccattcttcagtttgatttggatgatcaaacccccgccgtgattgagtggccctccgattccgatccaaattgctacactcagacctggctgacagaaggtgattgtcttcgcgtcgccactttctctcgcggaagccttcaaatgtgggagaggaaagtctgttctgaaggtgttgccaagtgggtgctgcagaagacgtatgagctgaagaatgttcttaacccggagattaggttgaatgtagagtatgtaacaaagctggggtatgctcaggatataaaggtgatgtttgtatgggctgctcacagtgtcttcatgctccaacttgattcgttgcaggccaagaaagtttgggaaagttgtgtcatcgccccaattcatccctacgcaagtacttatgttgcaggtatctag
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| Protein seq | MNRLRRRRGTSVAPPVTLPDDDDLLSEILLRLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPLIGVFEDYLGYPFFRSVLDPPDLIPRERFRLRLAEDEGGQWRFYGCRHGRVLLFNRAKNEILVWVPDTGDHRRVAVPPEIDGKEKIIWNGAVLSAANADDGFSSCPFKVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILVGHALYWMASGDHGSTILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGDCLRVATFSRGSLQMWERKVCSEGVAKWVLQKTYELKNVLNPEIRLNVEYVTKLGYAQDIKVMFVWAAHSVFMLQLDSLQAKKVWESCVIAPIHPYASTYVAGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.626360 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0320100 | RBH | 0.531480 | 0.241575 | 2.241412 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g25580 | RBH | 0.405378 | 0.000000 | 0.377296 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0320100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011670 | RBH | 0.345829 | 3.179356 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0011690 | RBH | 0.155905 | 0.978830 | 1.526948 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0011640 | RBH | 0.000000 | 0.0 | 1.569143 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0011700 | RBH | 0.000000 | 0.107378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0011690 | RBH | 1.995422 | 6.272103 | 8.805333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0219400 | RBH | 1.6497745 | 2.8518755 | 6.2377945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011440 | RBH | 0.117422 | 0.097007 | 1.044080 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0229000 | RBH | 1.8851035 | 2.2803565 | 7.9709825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0011620 | RBH | 0.248352 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0011540 | RBH | 0.225047 | 1.857518 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0011670 | RBH | 0.695791 | 3.831452 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0011690 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001910 | SBH | 0.032851 | 0.385829 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011390 | RBH | 0.093490 | 1.060737 | 0.833760 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0011680 | RBH | 0.0 | 2.353008 | 8.368031 |
