Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_05g0011690 OGI:05038420 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr05:14913383-14916778
Gene Symbol OsFbox255, Os_F0067
DNA seq

ggcatagcaaatcaaaccataattttgttggtgccaattctgaacacataaaatgctactgaaatgaaaaatattgtgcatggcctggtaatgcttagcctaatgttcagttcactttagtagaaagcaagtcagggcatcagtcgttatgtcttataccaggaaaccttgagtacataattcctacgagtcaacttcacaattgacaagtggactaaataaatagagggtcagcttccagtttctacattgggccattggcacatatcttcataggccacacagccaccaccaccacatacaaaatggaagatcatgcaccagcaatccatctctgcgccttaccaataagagtcaaagtctagatacctgcaggagaacaattccatcagtcattctggtatttacagtcacaaagttatatcactttttttttttggtgcaatgcaaactgcaactactattttcagcattgtgaaccgcacatcaaatttccaaagttgaataatgtcagtattattaccaggcaaaaacaaaaagaagaaacagtgaacaacgatagaggaacaattgaattgttggaactattctcgaactttggctacatctatctagcaactaaaggattactacttcactgcttcattttggcagatgaggggcacaaccacacatagcaggtagaaagtagaaacacctgtttctagttcatacgtattctttcagaaatttaagaaccaatcaataattactatgttcaaattaaaagttgtcggagaggcataagtacaccagccatgtatgattactaccgtttgtgattgtacactcaactctttctaatgtgtatctcaatatctcataagtgaaacctcttttggtcaacaaatatcatttatcttagcatggcactaaaacaaaccttaccagtttttcttaaaccataattcctgccattgaaaaatttagtactaagaaatagaaaaactatgaacattcagaatgcaagtgagggatctagttaatttcatcttgaactagagctccaagcatctatcaaggaattctttactgtagttagttatctattttattttagaaatacggtggtcatctgacaaaatcataatcagacagatacttctttaatcacaaatcaccatgcaaagccggctgtgtttggaggtgggtgttgggaacccatctcccatgtacggaaaacggagcggtccattagcgcgtgattagttaagtattagctatttttttaaaaaaatggatcaatatgatttttgtaaagaacttttgtatagaaattttttgcaaaaaacgcaccgtttagcagtttgaaaagcgtgcgcacggaaaacgagatgggagtgttgggaacttcctcttgcaaacacaccctaacccaaaatagtagactccacacattaaaaaaacacacgtactggagatatcacaaatgtaaactgaataaaattctaaagggaagcaaatattcctcgaaaatttatgttaataaaccttataactatgggtgcacaagttaactaaaattattctgctgcactgaccgtgtgtatataaatggactagagtaatgcatcctcaagctaacataatctagtaaaaaaaaaattagaacttcgttgacaagcagaatgttatcctagaaaaaagataatacaaaaaatatatgtatatatatttcttcctggtgcaaattaatacatttctatgcaggtgcaaattaatttcttactggtgatgcttctgactttttaccctcttttgacaagactgaacattaatttttcgagtaaataaaaacaaaataccatgcaattattttccatgacaaatctaaatacttctacatcttgcaatgttcaaaattcaaaacaaggtggaccgcaaggcttctaaaatgtcatctcgctcaaacaggtattgaatgaaaaaaaaaacagtgttaccttctgaaatgagcgagcaaattacttatttgagacgccagatgattcaaatctagattctgtgctttttatttcgtgtttatacaactacacctattaatctgttatgcagttaaatgctgaaaacataagtacctgcaacataagtacttgcgtagggatgaattggggcgatgacacaactttcccaaactttcttggcctgcaacgaatcaagttggagcatgaagacactgtgagcagcccatacaaacatcacctttatatcctgagcataccccagctttgttacatactctacattcaacctaatctccgggttaagaacattcttcagctcatacgtcttctgcagcacccacttggcaacaccttcagaacagactttcctctcccacatttgaaggcttccgcgagagaaagtggcgacgcgaagacaatcaccttctgtcagccaggtctgagtgtagcaatttggatcggaatcggagggccactcaatcacggcgggggtttgatcatccaaatcaaactgaagaatggtactcccatgatcaccagaagccatccaatacagggcatggccaacaagtatgccaggatcacgaaagaaaaacaccaagaagggagcagctactgagatgagatcactccatttgccggactccgagcagtaaacgcaggcgaacatctgtgtgttgttgccggcgacgcctaccaacaccaccttgaaggggcaagagctgaacccgtcgtcggcattggcagcagacagcactgccccattccaaatgatcttctccttgccgtcaatctccggcggaacggccacccggcggtggtcgccggtgtcggggacccacacaaggatctcattcttggcccggttgaagaggaggacgcggccatggcggcagccgtagaagcgccactggccgccctcgtcctcggcgagccgcaacctgaagcgctcccgtgggatgagatccggcggatccagaacggaccggaagaaggggtatccgaggtagtcctcgaagacgccgatgaggggtggattccggtggcgggcgcggaagcggcggtggaaggcggggtcggtgacgaggcggcgccagcgcttgcagacgagggaggcgcgggggagcgaggagggacgcggcgggaggcggaggaggatctccgagaggaggtcgtcgtcgtccggcagggtcaccggcggcgccactgaggtgccgcggcgacggcggaggcggttcatctcgcacgcagcgttggggtttggcttgggggcggcggtgcggtggtggggaagagctggtgggccggggctggcggcggccggcgccggcgccggcgaacggtggatggtgtggcacagtggcagtctgtttcgccttctcctcggccaatc

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CDS seq

atgaaccgcctccgccgtcgccgcggcacctcagtggcgccgccggtgaccctgccggacgacgacgacctcctctcggagatcctcctccgcctcccgccgcgtccctcctcgctcccccgcgcctccctcgtctgcaagcgctggcgccgcctcgtcaccgaccccgccttccaccgccgcttccgcgcccgccaccggaatccacccctcatcggcgtcttcgaggactacctcggataccccttcttccggtccgttctggatccgccggatctcatcccacgggagcgcttcaggttgcggctcgccgaggacgagggcggccagtggcgcttctacggctgccgccatggccgcgtcctcctcttcaaccgggccaagaatgagatccttgtgtgggtccccgacaccggcgaccaccgccgggtggccgttccgccggagattgacggcaaggagaagatcatttggaatggggcagtgctgtctgctgccaatgccgacgacgggttcagctcttgccccttcaaggtggtgttggtaggcgtcgccggcaacaacacacagatgttcgcctgcgtttactgctcggagtccggcaaatggagtgatctcatctcagtagctgctcccttcttggtgtttttctttcgtgatcctggcatacttgttggccatgccctgtattggatggcttctggtgatcatgggagtaccattcttcagtttgatttggatgatcaaacccccgccgtgattgagtggccctccgattccgatccaaattgctacactcagacctggctgacagaaggtgattgtcttcgcgtcgccactttctctcgcggaagccttcaaatgtgggagaggaaagtctgttctgaaggtgttgccaagtgggtgctgcagaagacgtatgagctgaagaatgttcttaacccggagattaggttgaatgtagagtatgtaacaaagctggggtatgctcaggatataaaggtgatgtttgtatgggctgctcacagtgtcttcatgctccaacttgattcgttgcaggccaagaaagtttgggaaagttgtgtcatcgccccaattcatccctacgcaagtacttatgttgcaggtatctag

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Protein seq

MNRLRRRRGTSVAPPVTLPDDDDLLSEILLRLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPLIGVFEDYLGYPFFRSVLDPPDLIPRERFRLRLAEDEGGQWRFYGCRHGRVLLFNRAKNEILVWVPDTGDHRRVAVPPEIDGKEKIIWNGAVLSAANADDGFSSCPFKVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILVGHALYWMASGDHGSTILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGDCLRVATFSRGSLQMWERKVCSEGVAKWVLQKTYELKNVLNPEIRLNVEYVTKLGYAQDIKVMFVWAAHSVFMLQLDSLQAKKVWESCVIAPIHPYASTYVAGI

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_05g0011690 OsKeNa_05g0011690.01 Chr05 14913383 14916778 - NAM
CDS seq

atgaaccgcctccgccgtcgccgcggcacctcagtggcgccgccggtgaccctgccggacgacgacgacctcctctcggagatcctcctccgcctcccgccgcgtccctcctcgctcccccgcgcctccctcgtctgcaagcgctggcgccgcctcgtcaccgaccccgccttccaccgccgcttccgcgcccgccaccggaatccacccctcatcggcgtcttcgaggactacctcggataccccttcttccggtccgttctggatccgccggatctcatcccacgggagcgcttcaggttgcggctcgccgaggacgagggcggccagtggcgcttctacggctgccgccatggccgcgtcctcctcttcaaccgggccaagaatgagatccttgtgtgggtccccgacaccggcgaccaccgccgggtggccgttccgccggagattgacggcaaggagaagatcatttggaatggggcagtgctgtctgctgccaatgccgacgacgggttcagctcttgccccttcaaggtggtgttggtaggcgtcgccggcaacaacacacagatgttcgcctgcgtttactgctcggagtccggcaaatggagtgatctcatctcagtagctgctcccttcttggtgtttttctttcgtgatcctggcatacttgttggccatgccctgtattggatggcttctggtgatcatgggagtaccattcttcagtttgatttggatgatcaaacccccgccgtgattgagtggccctccgattccgatccaaattgctacactcagacctggctgacagaaggtgattgtcttcgcgtcgccactttctctcgcggaagccttcaaatgtgggagaggaaagtctgttctgaaggtgttgccaagtgggtgctgcagaagacgtatgagctgaagaatgttcttaacccggagattaggttgaatgtagagtatgtaacaaagctggggtatgctcaggatataaaggtgatgtttgtatgggctgctcacagtgtcttcatgctccaacttgattcgttgcaggccaagaaagtttgggaaagttgtgtcatcgccccaattcatccctacgcaagtacttatgttgcaggtatctag

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Protein seq

MNRLRRRRGTSVAPPVTLPDDDDLLSEILLRLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPLIGVFEDYLGYPFFRSVLDPPDLIPRERFRLRLAEDEGGQWRFYGCRHGRVLLFNRAKNEILVWVPDTGDHRRVAVPPEIDGKEKIIWNGAVLSAANADDGFSSCPFKVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILVGHALYWMASGDHGSTILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGDCLRVATFSRGSLQMWERKVCSEGVAKWVLQKTYELKNVLNPEIRLNVEYVTKLGYAQDIKVMFVWAAHSVFMLQLDSLQAKKVWESCVIAPIHPYASTYVAGI

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.155905 0.978830 1.526948

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0320100 RBH 0.531480 0.241575 2.241412
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g25580 RBH 0.405378 0.000000 0.377296
Nipponbare | IRGSP 1.0 | RAP-db Os05g0320100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0011670 RBH 0.345829 3.179356 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0001890 RBH 0.0 0.628696 0.596129
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0011640 RBH 0.000000 0.0 1.569143
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0011700 RBH 0.000000 0.107378 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0011690 RBH 1.995422 6.272103 8.805333
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0219400 RBH 1.6497745 2.8518755 6.2377945
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0011440 RBH 0.117422 0.097007 1.044080
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0229000 RBH 1.8851035 2.2803565 7.9709825
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0011620 RBH 0.248352 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0011540 RBH 0.225047 1.857518 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0011670 RBH 0.695791 3.831452 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0011690 RBH 0.000000 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0011700 RBH 0.0 1.626360 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G011390 RBH 0.093490 1.060737 0.833760
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0011680 RBH 0.0 2.353008 8.368031
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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