Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0007510 | OGI:04045500 | 9/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:14451882-14454269 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatcctgtgccgCcgcccattcctggccatcgcccggtcccgcgcccgctcactctcaaccgcggccgtcgcggcggccgtccggcacggtgacctcgccggcgcggaggaggcgttcgtatccacgccacggaagaccacggccacctacaactgtctcctcgccggctacgccagggcgcctggccgcctcgcggacgcgcgccacttgttcgaccgaataccgaccccggacgtcgtctcgtacaacacgctcctcttgtgccacttcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgccggtcagggacgtcgcgtcctggaacacaatggtgtcagggctgtccaagagcggggccgtggaggaggccaaggttgtgttcctggcgatgccagtgaggaactccgtttcctggaacgccatggtttccgggttcgcctgctctggagacatgagcacggcagaggagtggtttaggaatgcgccagagaaggaggacgccgttctgtggactgcgatggtgtcggggtacatggatatcggcaatgtggtgaaggccatcaaatactttgaggcaatgccagtgaggaacttggtttcatggaatgctgtggttgctgggtatgtgaagaattcacatgcggatgatgctttgaggctgttcaggaccatggtcagggaggccaatgttcagccaaatgcatcgacgttaagcagcgtacttcttggttgcagtaacttgtctgcacttggatttggtaagcagatacatcagtggtgtatgaagcttccgttgagtaggaacttgacggtgggcacgtcacttgtgagcatgtattgcaagtgtggggacttgagtagcgcgtgcatactgtttggtgaaatgcatacgagggatgtggttgcgtggaatgctatgatatctggctatgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttgtggtagtattgactgcttgtatccacactggcttgtgtgattttggaatacagtgttttgagggaatgcaggaattgtacggaattgagcctcgggttgatcattactcatgcatggtggatcttctctgcagagctggtaagcttgaaagagctgtggactttaTCCgctcaatgccctttgaaccacatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgccggcgcctatgtacaacttgcaaatatctatgctgtcgcaaatcagtgggatgatgtctctagagtaaggaggtggatgaaggataatacagttgtgaaaacacctgggtatagttggatagagattaagggtgtgctgcatgagtttagatcaaatgacagattgcaccctcagctttacttgatccatgaaaaactgggccagttagcggagaggatgaaggaaatgggttatgttccagatcttgattttgtcctgcatgatgtggatgaaactatgaaggtgcagatgctaatgaggcacagtgagaagcttgctattgcttttggtctgattagtactgctcatgggatgaccttgaggattttcaagaatctcagggtttgtggagactgtcataatgcagccaaggtcatctccatgatcgaggatcgagaaatcattttgagggatactacacgattccaccattttagaggagggcattgctcatgtgatgattactggtgaagaatgtcgataacaacagatacatactaccattttttatggggattcagcactatgtcctcattttttatggggattcagcactatgtcctgtaacaaggaaaaatgttgatcactgtatacaggaagcactcaacagtCAAcaACATATGAGCAATTTACCATGACGATTTATTCATGATGTTACTTTTGATAGTTTTTTATGCTTTTCAGACTAGGGGACTTGTAATATACACATTCCCTCGAGTACATGTCGGTGTATGAATATatatatctagactgaatgaaaggattgatagagtgcattttatttatcacaggtaggtactagcgatttggggaattgtatgagccaattcccaacactgagtagctgcaattttcggttcctatagttgtaattttctagaatagtaaatgacttttggatccttacaaaatctgctaaatttatgctattcctgatgacgtgattgttgtgcaggcttcaggatccaagaggatagcaatggggggcgtaggaggctgcagccagttgtgtcgtga
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| CDS seq | atgatcctgtgccgCcgcccattcctggccatcgcccggtcccgcgcccgctcactctcaaccgcggccgtcgcggcggccgtccggcacggtgacctcgccggcgcggaggaggcgttcgtatccacgccacggaagaccacggccacctacaactgtctcctcgccggctacgccagggcgcctggccgcctcgcggacgcgcgccacttgttcgaccgaataccgaccccggacgtcgtctcgtacaacacgctcctcttgtgccacttcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgccggtcagggacgtcgcgtcctggaacacaatggtgtcagggctgtccaagagcggggccgtggaggaggccaaggttgtgttcctggcgatgccagtgaggaactccgtttcctggaacgccatggtttccgggttcgcctgctctggagacatgagcacggcagaggagtggtttaggaatgcgccagagaaggaggacgccgttctgtggactgcgatggtgtcggggtacatggatatcggcaatgtggtgaaggccatcaaatactttgaggcaatgccagtgaggaacttggtttcatggaatgctgtggttgctgggtatgtgaagaattcacatgcggatgatgctttgaggctgttcaggaccatggtcagggaggccaatgttcagccaaatgcatcgacgttaagcagcgtacttcttggttgcagtaacttgtctgcacttggatttggtaagcagatacatcagtggtgtatgaagcttccgttgagtaggaacttgacggtgggcacgtcacttgtgagcatgtattgcaagtgtggggacttgagtagcgcgtgcatactgtttggtgaaatgcatacgagggatgtggttgcgtggaatgctatgatatctggctatgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttgtggtagtattgactgcttgtatccacactggcttgtgtgattttggaatacagtgttttgagggaatgcaggaattgtacggaattgagcctcgggttgatcattactcatgcatggtggatcttctctgcagagctggtaagcttgaaagagctgtggactttaTCCgctcaatgccctttgaaccacatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgccggcgcctatgtacaacttgcaaatatctatgctgtcgcaaatcagtgggatgatgtctctagagtaggcttcaggatccaagaggatagcaatggggggcgtaggaggctgcagccagttgtgtcgtga
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| Protein seq | MILCRRPFLAIARSRARSLSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVGFRIQEDSNGGRRRLQPVVS |
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| Function | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial [UniProtKB/Swiss-Prot:Q9M4P3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0007510 | OsLaMu_04g0007510.01 | Chr04 | 14451882 | 14454269 | + | NAM | ||
| CDS seq | atgatcctgtgccgCcgcccattcctggccatcgcccggtcccgcgcccgctcactctcaaccgcggccgtcgcggcggccgtccggcacggtgacctcgccggcgcggaggaggcgttcgtatccacgccacggaagaccacggccacctacaactgtctcctcgccggctacgccagggcgcctggccgcctcgcggacgcgcgccacttgttcgaccgaataccgaccccggacgtcgtctcgtacaacacgctcctcttgtgccacttcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgccggtcagggacgtcgcgtcctggaacacaatggtgtcagggctgtccaagagcggggccgtggaggaggccaaggttgtgttcctggcgatgccagtgaggaactccgtttcctggaacgccatggtttccgggttcgcctgctctggagacatgagcacggcagaggagtggtttaggaatgcgccagagaaggaggacgccgttctgtggactgcgatggtgtcggggtacatggatatcggcaatgtggtgaaggccatcaaatactttgaggcaatgccagtgaggaacttggtttcatggaatgctgtggttgctgggtatgtgaagaattcacatgcggatgatgctttgaggctgttcaggaccatggtcagggaggccaatgttcagccaaatgcatcgacgttaagcagcgtacttcttggttgcagtaacttgtctgcacttggatttggtaagcagatacatcagtggtgtatgaagcttccgttgagtaggaacttgacggtgggcacgtcacttgtgagcatgtattgcaagtgtggggacttgagtagcgcgtgcatactgtttggtgaaatgcatacgagggatgtggttgcgtggaatgctatgatatctggctatgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttgtggtagtattgactgcttgtatccacactggcttgtgtgattttggaatacagtgttttgagggaatgcaggaattgtacggaattgagcctcgggttgatcattactcatgcatggtggatcttctctgcagagctggtaagcttgaaagagctgtggactttaTCCgctcaatgccctttgaaccacatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgccggcgcctatgtacaacttgcaaatatctatgctgtcgcaaatcagtgggatgatgtctctagagtaggcttcaggatccaagaggatagcaatggggggcgtaggaggctgcagccagttgtgtcgtga
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| Protein seq | MILCRRPFLAIARSRARSLSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVGFRIQEDSNGGRRRLQPVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.604338 | 2.840098 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0414800 | SBH | 0.328206 | 0.152854 | 0.923417 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52725 | SBH | 0.166211 | 0.113019 | 0.309275 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0414800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012780 | SBH | 0.0 | 0.0 | 0.705136 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013610 | SBH | 0.078428 | 0.0 | 0.565621 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013310 | SBH | 0.0 | 3.402720 | 0.695992 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003580 | SBH | 0.177044 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007470 | RBH | 2.851716 | 0.000000 | 6.638305 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0219900 | RBH | 4.2899235 | 10.6055995 | 6.629178 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007220 | RBH | 0.249065 | 0.218042 | 0.504156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0052400 | SBH | 0.9021825 | 3.4409105 | 3.726572 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012750 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003320 | SBH | 0.181414 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004640 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003410 | SBH | 0.387552 | 0.214998 | 0.454996 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007190 | RBH | 0.270784 | 1.299248 | 1.021425 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007290 | RBH | 2.141883 | 5.280791 | 1.556733 |
