Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0006120 | OGI:04037180 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:11893732-11895409 | ||||||||
| Gene Symbol | OsFbox193, Os_F0515 | ||||||||||
| DNA seq | atacatgagcagtagaacattccagtagacgatgttaaaatacagattataatgcagatcaaagtaacacaacatcgtcaatcatgtcgtgcacgtcattattgtctataaaaacgcagttattctttatttcctcaggcacaaaaccttacaaaattgaaagcaaattttcaccatctaaatgatcagtaccgattttttaaactgaagcAaaaaaaaatcataataatgtacaagagactatagcgcgtttgttggcacgccagtatttaagctcgttggtcaacttcaattgacgatctgccgtggttttagctggtagggtaacgaagaattgctccaaagatgttgccttggatagaagatactttgcgagcaatctctcgttgggcttccctttgtagttgtgcaatttgatcttcctcagcttgtgcaagcactcgatgttgctctcccacaagctcagcggcacacgcacAccttggttatcatccgaggcgccgccgtcctcctcctcctcctcctcggagtcgtagtcgtcgtcggagtcgacgccgaggtagtatggctttgcaggctgaggacggagagggaacagcgagagcacgtcgagctccggcgtgttgcggagcaatgtggagactgagcggatggtctggtcgtccttgaggaggcccttgagcgcgagctgccggaggtggggatggtggcggaggacgcgcgtgaaggcgccgctgtggtacgccatcgccgggcggaggtggaggtggaggaaggtgaggctggcgcaccgggtgatgagcttcgtgatgggcacgacggcgggggcggatttcccgacgaggctctcgcagatgtcgatcgtcatggccaggacgttggtgcagtcggcgatcatcaagaagttctcgccggcgggaaggccgcccttgtagcgcagcgtccggaggcgttgggtgtggagcacgacgtgggcggcgttgtggcagcagatcatggcgaagctctcgaggcgcgggctggcaacgacgaggtccgccacgctggggcactgctccagcgtcaggtcggcgaggttcgggcagccggagacgagctgctgcaccgcctcgtccgtcgtcgccatgatcctcttgagggagaggatctccagcgacggcatggagacgccgccctccggcacgtcgagctggaagttggtgagccgcaggcggcgcagcgtgtcgcaccggaagatgtgtggtggcgtggcggtgaacgagccgcgcatggagtcgtcgaagtcggcggaggcatcggggtggcggcggaaggggcagagcttgcggttggagcagtccccgtgcctgagcttgacgtcgaactcctggaggccggcggcggtggcggtggcgaccgcctggtggagcgcgtcgtgcggcggccagagatcgacgagccggagcgtgcggatgggcgccgccgagttcttggcgacgatggcgcttgagatctggtcgctctcggggtcgacgaggtcgacgacggggacggctgcgtggatgtggcgccaccggtgggacagcgcggcggtgctagccgcgtcgacggagccgaggtgagagaggaagcgcactagtattccgtccgggagagcgctcagccggtcgtgtcggtgcctgccagtcgtcgtcgccat
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| CDS seq | atggcgacgacgactggcaggcaccgacacgaccggctgagcgctctcccggacggaatactagtgcgcttcctctctcacctcggctccgtcgacgcggctagcaccgccgcgctgtcccaccggtggcgccacatccacgcagccgtccccgtcgtcgacctcgtcgaccccgagagcgaccagatctcaagcgccatcgtcgccaagaactcggcggcgcccatccgcacgctccggctcgtcgatctctggccgccgcacgacgcgctccaccaggcggtcgccaccgccaccgccgccggcctccaggagttcgacgtcaagctcaggcacggggactgctccaaccgcaagctctgccccttccgccgccaccccgatgcctccgccgacttcgacgactccatgcgcggctcgttcaccgccacgccaccacacatcttccggtgcgacacgctgcgccgcctgcggctcaccaacttccagctcgacgtgccggagggcggcgtctccatgccgtcgctggagatcctctccctcaagaggatcatggcgacgacggacgaggcggtgcagcagctcgtctccggctgcccgaacctcgccgacctgacgctggagcagtgccccagcgtggcggacctcgtcgttgccagcccgcgcctcgagagcttcgccatgatctgctgccacaacgccgcccacgtcgtgctccacacccaacgcctccggacgctgcgctacaagggcggccttcccgccggcgagaacttcttgatgatcgccgactgcaccaacgtcctggccatgacgatcgacatctgcgagagcctcgtcgggaaatccgcccccgccgtcgtgcccatcacgaagctcatcacccggtgcgccagcctcaccttcctccacctccacctccgcccggcgatggcgtaccacagcggcgccttcacgcgcgtcctccgccaccatccccacctccggcagctcgcgctcaagggcctcctcaaggacgaccagaccatccgctcagtctccacattgctccgcaacacgccggagctcgacgtgctctcgctgttccctctccgtcctcagcctgcaaagccatactacctcggcgtcgactccgacgacgactacgactccgaggaggaggaggaggaggacggcggcgcctcggatgataaccaaggTgtgcgtgtgccgctgagcttgtgggagagcaacatcgagtgcttgcacaagctgaggaagatcaaattgcacaactacaaagggaagcccaacgagagattgctcgcaaagtatcttctatccaaggcaacatctttggagcaattcttcgttaccctaccagctaaaaccacggcagatcgtcaattgaagttgaccaacgagcttaaatactggcgtgccaacaaacgcgctatagtctcttgtacattattatga
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| Protein seq | MATTTGRHRHDRLSALPDGILVRFLSHLGSVDAASTAALSHRWRHIHAAVPVVDLVDPESDQISSAIVAKNSAAPIRTLRLVDLWPPHDALHQAVATATAAGLQEFDVKLRHGDCSNRKLCPFRRHPDASADFDDSMRGSFTATPPHIFRCDTLRRLRLTNFQLDVPEGGVSMPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVADLVVASPRLESFAMICCHNAAHVVLHTQRLRTLRYKGGLPAGENFLMIADCTNVLAMTIDICESLVGKSAPAVVPITKLITRCASLTFLHLHLRPAMAYHSGAFTRVLRHHPHLRQLALKGLLKDDQTIRSVSTLLRNTPELDVLSLFPLRPQPAKPYYLGVDSDDDYDSEEEEEEDGGASDDNQGVRVPLSLWESNIECLHKLRKIKLHNYKGKPNERLLAKYLLSKATSLEQFFVTLPAKTTADRQLKLTNELKYWRANKRAIVSCTLL |
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| Function | Putative FBD-associated F-box protein At1g55030 [UniProtKB/Swiss-Prot:Q9C7M1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0006120 | OsLaMu_04g0006120.01 | Chr04 | 11893732 | 11895409 | - | NAM | ||
| CDS seq | atggcgacgacgactggcaggcaccgacacgaccggctgagcgctctcccggacggaatactagtgcgcttcctctctcacctcggctccgtcgacgcggctagcaccgccgcgctgtcccaccggtggcgccacatccacgcagccgtccccgtcgtcgacctcgtcgaccccgagagcgaccagatctcaagcgccatcgtcgccaagaactcggcggcgcccatccgcacgctccggctcgtcgatctctggccgccgcacgacgcgctccaccaggcggtcgccaccgccaccgccgccggcctccaggagttcgacgtcaagctcaggcacggggactgctccaaccgcaagctctgccccttccgccgccaccccgatgcctccgccgacttcgacgactccatgcgcggctcgttcaccgccacgccaccacacatcttccggtgcgacacgctgcgccgcctgcggctcaccaacttccagctcgacgtgccggagggcggcgtctccatgccgtcgctggagatcctctccctcaagaggatcatggcgacgacggacgaggcggtgcagcagctcgtctccggctgcccgaacctcgccgacctgacgctggagcagtgccccagcgtggcggacctcgtcgttgccagcccgcgcctcgagagcttcgccatgatctgctgccacaacgccgcccacgtcgtgctccacacccaacgcctccggacgctgcgctacaagggcggccttcccgccggcgagaacttcttgatgatcgccgactgcaccaacgtcctggccatgacgatcgacatctgcgagagcctcgtcgggaaatccgcccccgccgtcgtgcccatcacgaagctcatcacccggtgcgccagcctcaccttcctccacctccacctccgcccggcgatggcgtaccacagcggcgccttcacgcgcgtcctccgccaccatccccacctccggcagctcgcgctcaagggcctcctcaaggacgaccagaccatccgctcagtctccacattgctccgcaacacgccggagctcgacgtgctctcgctgttccctctccgtcctcagcctgcaaagccatactacctcggcgtcgactccgacgacgactacgactccgaggaggaggaggaggaggacggcggcgcctcggatgataaccaaggTgtgcgtgtgccgctgagcttgtgggagagcaacatcgagtgcttgcacaagctgaggaagatcaaattgcacaactacaaagggaagcccaacgagagattgctcgcaaagtatcttctatccaaggcaacatctttggagcaattcttcgttaccctaccagctaaaaccacggcagatcgtcaattgaagttgaccaacgagcttaaatactggcgtgccaacaaacgcgctatagtctcttgtacattattatga
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| Protein seq | MATTTGRHRHDRLSALPDGILVRFLSHLGSVDAASTAALSHRWRHIHAAVPVVDLVDPESDQISSAIVAKNSAAPIRTLRLVDLWPPHDALHQAVATATAAGLQEFDVKLRHGDCSNRKLCPFRRHPDASADFDDSMRGSFTATPPHIFRCDTLRRLRLTNFQLDVPEGGVSMPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVADLVVASPRLESFAMICCHNAAHVVLHTQRLRTLRYKGGLPAGENFLMIADCTNVLAMTIDICESLVGKSAPAVVPITKLITRCASLTFLHLHLRPAMAYHSGAFTRVLRHHPHLRQLALKGLLKDDQTIRSVSTLLRNTPELDVLSLFPLRPQPAKPYYLGVDSDDDYDSEEEEEEDGGASDDNQGVRVPLSLWESNIECLHKLRKIKLHNYKGKPNERLLAKYLLSKATSLEQFFVTLPAKTTADRQLKLTNELKYWRANKRAIVSCTLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0267600 | SBH | 0.0 | 0.0 | 1.071304 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g19750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0267600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005590 | RBH | 0.0 | 0.0 | 0.184042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0006180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006010 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006100 | RBH | 0.0 | 0.0 | 1.245102 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0176200 | RBH | 0.0249335 | 0.017066 | 0.037959 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0186000 | RBH | 0.0497725 | 0.007898 | 0.018391 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005830 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005780 | RBH | 0.0 | 0.0 | 0.151949 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005920 | RBH | 0.0 | 0.0 | 0.0 |
