Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0267600 | OGI:04037330 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:11060393-11062063 | ||||||||
| Gene Symbol | OsFbox193, Os_F0515, OsFbox194, Os_F0635, OsFbox195, Os_F0144, OsFbox196, Os_F0324 | ||||||||||
| DNA seq | GAATCGATATGCTCGAAGCAATTAAACTTTCGTCATCCAATAGTGACTCAACCAATATACAGATTTTTACCCAAAGAATTGAAGCAAAGATTTCATAATCTAGACGTGACTCTTATAAGAGATTCTTGTCCGCTTGTTCGCTCGCCAGTATGACAGCTCCTTCGTCAACTTCCATCGACGATCTTCTGTTGATGTTTTATTAGCTGGCAGGGTAATGGAGCATTGCTCCAAAGCTGATGCCTTGGAGAGGAGATACTTTGCAAGCATCCTCTCGTTGGGCGTCCCTTTGTAGTTGAGCAGCTTGATCTTCCTCAGCCTGTGCAAGCACTCTACTCGAGTCTCCCACAAGATCTTCGGCACATGAACATAGGTGTCTTCACCGTCCAAGGCGCTCTTGTCCTTCTTGTTTTCCTCTTAGCCGTTCTGCGAGGAGTCATCGTCGGAGCCGTCGAACATGTAAAGATAGTCAGGCTTTGGGGGGCGAGGACGGAGAGGGATCAGCGAGAGCACGTCGAGGTTCGGCGTGTTGCGAAGCAACGTGGAGACTGATAAGGCGGTTTCGTCATTGTCGAGGAGGCCCTTGAGAGCGAGCTGCCGGAGGTGGGGAAGATGGCGGAGGGCGCGTGTGAAAGTCCCGCTGTGGAACGCCATTGTCGGGCGAAGGTGGAGGTGGAGGAAGGTGACGTTGGTGCACCGGGTGATGACCTTTGTGATGGGGACGACAGCCGATGCCGATTTCCCGAGGAGGCTTTCGCAGATGTCGATGGTCATGGCCAGTACGTCACCGCAGTTGGCGATGGAGAAGAAGTTCTCACCGGGGAGGCCGCCCTTGTAGCGCAGCGTCCGGAGGCGCTCGGCTTGGAGCACGACGTGGCTGGCGTGGTGGCAGCAGATCATGGCGAAGCTGTCGAGGCGCGGGCTGGCGACGACGAGCCTCTTCACGCTGGGGCACTGCTCCAGCGTCAGGTCGGCGATGTTCGGGCAGCCAGAGATGAGACGCTGCACCGCCCCGTCCTCCGCCATGATCCTCTTGAGGAATAGGGTCTCCAGCGACGGCATGGAGACGCCGCCCGCCGGCACGTCGAGCGTCCAGTTGGTGAGCAGCAGACGGCGCAGCGTGTCGCACCGGAAGATGTGCGGCGGCGTTGCGGTGAACGAGTGGCGCATCTCCTCGTCGAAGTCGGCGGAGGCCTTGGGGTGGGTGCCAAACGGACAGAGGTTGCGCCTGGAGTGGTCCCAGTACCGGAGCTTGACGTCGAACTCCTCGAGGCCGGAGACGGAGACGATGGCGAACCACTGGTCGCGCAGGTCGTAAGGCGGGTAGAACGCGTCGAGCCGGAACTTGCGGGTCGGCAAGTCCTTGCCGAGGATGGCGGCGGTAACCTGATGATCGAAGCAGGTCTTCTGTCCCGAGACGTTTCCCCACCGTTCGCCCTTCTTGGGGTCGACGAGGTCGACGACGGGGACGGCGGCGTGGACGTTGCGCCACCGCCGGGACAGCGCGGACGTGACGGTCGCGTTGACGGAGCCGAGGTGGTAGAGCACCCGCGCCAGCGTCGCATCCGGGAGATCGCTCAGCCGGTCGCGGCGCTGCATAATGGTCATCGTCTTTGCCGTATTCGATCTCGGCTCCGTCATATTATTCGATCTTGGCGTCGTCTTCGTCGTGGT
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| CDS seq | ATGACGGAGCCGAGATCGAATACGGCAAAGACGATGACCATTATGCAGCGCCGCGACCGGCTGAGCGATCTCCCGGATGCGACGCTGGCGCGGGTGCTCTACCACCTCGGCTCCGTCAACGCGACCGTCACGTCCGCGCTGTCCCGGCGGTGGCGCAACGTCCACGCCGCCGTCCCCGTCGTCGACCTCGTCGACCCCAAGAAGGGCGAACGGTGGGGAAACGTCTCGGGACAGAAGACCTGCTTCGATCATCAGGTTACCGCCGCCATCCTCGGCAAGGACTTGCCGACCCGCAAGTTCCGGCTCGACGCGTTCTACCCGCCTTACGACCTGCGCGACCAGTGGTTCGCCATCGTCTCCGTCTCCGGCCTCGAGGAGTTCGACGTCAAGCTCCGGTACTGGGACCACTCCAGGCGCAACCTCTGTCCGTTTGGCACCCACCCCAAGGCCTCCGCCGACTTCGACGAGGAGATGCGCCACTCGTTCACCGCAACGCCGCCGCACATCTTCCGGTGCGACACGCTGCGCCGTCTGCTGCTCACCAACTGGACGCTCGACGTGCCGGCGGGCGGCGTCTCCATGCCGTCGCTGGAGACCCTATTCCTCAAGAGGATCATGGCGGAGGACGGGGCGGTGCAGCGTCTCATCTCTGGCTGCCCGAACATCGCCGACCTGACGCTGGAGCAGTGCCCCAGCGTGAAGAGGCTCGTCGTCGCCAGCCCGCGCCTCGACAGCTTCGCCATGATCTGCTGCCACCACGCCAGCCACGTCGTGCTCCAAGCCGAGCGCCTCCGGACGCTGCGCTACAAGGGCGGCCTCCCCGGTGAGAACTTCTTCTCCATCGCCAACTGCGGTGACGTACTGGCCATGACCATCGACATCTGCGAAAGCCTCCTCGGGAAATCGGCATCGGCTGTCGTCCCCATCACAAAGGTCATCACCCGGTGCACCAACGTCACCTTCCTCCACCTCCACCTTCGCCCGACAATGGCGTTCCACAGCGGGACTTTCACACGCGCCCTCCGCCATCTTCCCCACCTCCGGCAGCTCGCTCTCAAGGGCCTCCTCGACAATGACGAAACCGCCTTATCAGTCTCCACGTTGCTTCGCAACACGCCGAACCTCGACGTGCTCTCGCTGATCCCTCTCCGTCCTCGCCCCCCAAAGCCTGACTATCTTTACATGTTCGACGGCTCCGACGATGACTCCTCGCAGAACGGCTAA
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| Protein seq | MTEPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPVVDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQWFAIVSVSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDTLRRLLLTNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVASPRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTIDICESLLGKSASAVVPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDETALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYLYMFDGSDDDSSQNG |
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| Function | Putative F-box/FBD/LRR-repeat protein At5g44950 [UniProtKB/Swiss-Prot:Q9FLA2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0267600 | OsNip_04t0267600-01 | Chr04 | 11060393 | 11062063 | - | RAP2018-11-26 | ||
| CDS seq | ATGACGGAGCCGAGATCGAATACGGCAAAGACGATGACCATTATGCAGCGCCGCGACCGGCTGAGCGATCTCCCGGATGCGACGCTGGCGCGGGTGCTCTACCACCTCGGCTCCGTCAACGCGACCGTCACGTCCGCGCTGTCCCGGCGGTGGCGCAACGTCCACGCCGCCGTCCCCGTCGTCGACCTCGTCGACCCCAAGAAGGGCGAACGGTGGGGAAACGTCTCGGGACAGAAGACCTGCTTCGATCATCAGGTTACCGCCGCCATCCTCGGCAAGGACTTGCCGACCCGCAAGTTCCGGCTCGACGCGTTCTACCCGCCTTACGACCTGCGCGACCAGTGGTTCGCCATCGTCTCCGTCTCCGGCCTCGAGGAGTTCGACGTCAAGCTCCGGTACTGGGACCACTCCAGGCGCAACCTCTGTCCGTTTGGCACCCACCCCAAGGCCTCCGCCGACTTCGACGAGGAGATGCGCCACTCGTTCACCGCAACGCCGCCGCACATCTTCCGGTGCGACACGCTGCGCCGTCTGCTGCTCACCAACTGGACGCTCGACGTGCCGGCGGGCGGCGTCTCCATGCCGTCGCTGGAGACCCTATTCCTCAAGAGGATCATGGCGGAGGACGGGGCGGTGCAGCGTCTCATCTCTGGCTGCCCGAACATCGCCGACCTGACGCTGGAGCAGTGCCCCAGCGTGAAGAGGCTCGTCGTCGCCAGCCCGCGCCTCGACAGCTTCGCCATGATCTGCTGCCACCACGCCAGCCACGTCGTGCTCCAAGCCGAGCGCCTCCGGACGCTGCGCTACAAGGGCGGCCTCCCCGGTGAGAACTTCTTCTCCATCGCCAACTGCGGTGACGTACTGGCCATGACCATCGACATCTGCGAAAGCCTCCTCGGGAAATCGGCATCGGCTGTCGTCCCCATCACAAAGGTCATCACCCGGTGCACCAACGTCACCTTCCTCCACCTCCACCTTCGCCCGACAATGGCGTTCCACAGCGGGACTTTCACACGCGCCCTCCGCCATCTTCCCCACCTCCGGCAGCTCGCTCTCAAGGGCCTCCTCGACAATGACGAAACCGCCTTATCAGTCTCCACGTTGCTTCGCAACACGCCGAACCTCGACGTGCTCTCGCTGATCCCTCTCCGTCCTCGCCCCCCAAAGCCTGACTATCTTTACATGTTCGACGGCTCCGACGATGACTCCTCGCAGAACGGCTAA
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| Protein seq | MTEPRSNTAKTMTIMQRRDRLSDLPDATLARVLYHLGSVNATVTSALSRRWRNVHAAVPVVDLVDPKKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQWFAIVSVSGLEEFDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFRCDTLRRLLLTNWTLDVPAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVASPRLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTIDICESLLGKSASAVVPITKVITRCTNVTFLHLHLRPTMAFHSGTFTRALRHLPHLRQLALKGLLDNDETALSVSTLLRNTPNLDVLSLIPLRPRPPKPDYLYMFDGSDDDSSQNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.071304 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g19800 | RBH | 0.0 | 0.0 | 0.269013 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0267600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005620 | RBH | 0.0 | 0.0 | 0.383903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0006200 | RBH | 0.0 | 0.0 | 0.603974 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006040 | RBH | 0.0 | 0.0 | 2.136638 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006140 | RBH | 0.0 | 0.0 | 2.737911 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0177500 | RBH | 0.036721 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005950 | RBH | 0.0 | 0.0 | 0.132509 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0187500 | RBH | 0.0205365 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005890 | RBH | 0.0 | 0.0 | 0.138890 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005830 | RBH | 0.0 | 0.0 | 0.207510 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005960 | RBH | 0.0 | 0.0 | 0.0 |
