Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0005870 | OGI:04033110 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:11025098-11027842 | ||||||||
| Gene Symbol | DGS1, OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1 | ||||||||||
| DNA seq | cgcaagggagggcttaaatttgcacccaaggttcgtcctaagaaagctccaaagatcgtcctgaaaacgtatgtgattcgctccatattttcttccataatgctttgatatgtttcatgggagattatctattacaataggttatgtgctgtcgaatgagagagagagtttgtgtaattcaacagggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaagacatcacaggtgtttatttctcatcttttttgtcatttaatactgtgcataaaaagtttcttgttaattaagtcttgtttggtgtttgtgaaatcttgaattactttgccgatttgcagagcacagatCcctttgtgagaaaatttaagactgagaaaaagggtaagacaagttaattgctgttcctttccgtcctttccaatttattcatgatcatctggtaaatgtgtaatcttgtattaTttgagcatgaccagtgtctatttccccctgttgttatcggtttatcagttaacttgtcttgccaaatatgcatgtcctcagaggttttaaattttcaacctgcaactgcaatctatgtagttaagaatagtgaaggctgtgaattgagcatgcatgactgatttttcattgctcaatggatttttcctgattcagctggccacatgagtgttttacttgtatgaccaatcttaatctactaggcaatgcatatcctttttttttcaaaaagaaaagaaaagaacttgtacaccgacccttgaactatatctgctgcacaattgcaagtggtttcttagttggtcaagtacaagtgtgtggttcggttgtatcagaggatgaaaatttgttgcaagcaaaacactggtctgttagaagagtatgatttgattttcatcctattctaagcagtataattgaatgcttaatgcattggaatgccctgagaaatgttatgcgcaaaggatgcatcaaaatagcatttcactgattcattccatgcctaatcattattttgtgtagtaaaaggtcccattaatgtacagagtatttctgatgatgttggccttctctcttgatttacatgcttacttgctactgatgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcaggtattaagatattatgtgtgtccaatgttttatctttagctgaaccatccacttggtagtcaagtgtatattgactttactatatatatcatcaaactggatagtattgcaagcgttgcttgtcttttgtaaggacacataatctttattacttattcagctgtatggattactttgtttggatattgacaagctttgtttacatgcatattcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggtgagtaaataaagatatcaagttcacttatgtgagattccttctttccactccttatttacttgattcctcataggactatacccacagtgactatcctgttactctcccactgaggagaccatattctggagatcctggtatcttgttggtccttccagactaggtagaatcattttcttcaaccaaaccttatgtctcttctgttcataatccagaaattcttaatgaagaggagtttggagaggcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatggtgtgtcctggtgtttaagttcaatgtttcatttctggtaactggagtgtagcttaaaagcaaatagaattgtactctgtgtagcatatgcatcctagccttttaacttttagacctgttaaagtggcgaaggcaagtccgttttgctgattgatgtattgacatttgacagcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtgagtatgaaaactctatgccccagcattctatctttatgttttccatggccccatgctatatcaaaactgaaacaaccgtgcaggtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaagcccatgccttatgtgcaaaagtcatggccatatgaaccatttcatgggaattttgtttgctcctcatccatgagtttcctttacttgcccttgggcttctttagaccaaaaaacgccagttttatcaaaatggcaattttgagttttcgtgggaatatatcaaacggtggagaatcagttagccagcaagtcacaaaatgtcaaagtgaactgctgagcgattttgtgtcctcttctcatctatagcagtcaaattttgtcatcga
More
|
||||||||||
| CDS seq | atgaagcttaagacatcacagagcacagatCcctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccatattctggagatcctgaaattcttaatgaagaggagtttggagaggcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
More
|
||||||||||
| Protein seq | MKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGEASATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA |
||||||||||
| Function | DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot:Q5E9Z7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0005870 | OsLaMu_04g0005870.01 | Chr04 | 11025098 | 11027842 | + | NAM | ||
| CDS seq | atgaagcttaagacatcacagagcacagatCcctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccatattctggagatcctgaaattcttaatgaagaggagtttggagaggcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
More
|
|||||||
| Protein seq | MKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGEASATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0394500 | SBH | 2.753114 | 3.539967 | 6.915311 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32350 | SBH | 2.381084 | 2.348512 | 1.920179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011630 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012430 | SBH | 0.000000 | 4.125924 | 3.994825 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012120 | SBH | 1.241509 | 11.390977 | 7.177646 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011790 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005950 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0155600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005660 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0166900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005540 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001600 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005570 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005370 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011150 | SBH | 0.000000 | 3.441894 | 0.969036 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005720 | SBH | 0.0 | 0.0 | 0.0 |
