Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_04g0000530 OGI:04001630 | 6/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr04:731884-738384
Gene Symbol -
DNA seq

ttactcctcttcttgagaaaccttgctgggcggaacgacgcctatctcgaacctcctcaaccagggcccgagcgcgagcttccggggagcagcacggctttggcgaggttgccggccatcggtgagggggtgggggcacgctcggaaaccgagagaggcggagaagcgagctcggtcctggtggaggcatcgagcagcgctgttgcagcgaggatgcgatcggcgggtcgtgctcctaccgtcgctgacccaggcttggggaagccagatatgaccactagcttctggccttccgcatcgcgccttctcctcgtcgtcggggcaggacttcctgcctcctgagatgtgtggtggcgaccggagaggagaaggggaagggtaaggggacaggggcggggctgggcattatggttttaccctttggatgtttaataccatgtggactgggcattcggtactgccaggtaccgattcttgccagccgtccgatcataatgaatcaacggattaaatttggtaccgccctcacatgatggacggtaaaattcctctaaaaataaacaatggtaaataacatttacatagaaagtttttttaaccccactggggaaaaaatatcaggggcaagaacatggacatacacaacaagcgtctacaagaattagcttataatagaagtccttacttcacgatcaaccataaacagttaaattcatgaaacacatcactcaaggaataaacatacgtgtccccataacacatacttcttccatttcataatgtaacactttctagtattgtccacattcatatatatacaccatgagtgcaaaatgtagataatacaaatgcaaataagtcttctccaatggaaaaccttgaaacgcaaaaaggaggcaaactctccatttcacagatgccatgagaaactcagatgtcttctaaaaaggcaacaaataatgaaaacatcttgatgccaactagtattaccttaaacagaacactaataatgagcatttatatatagatgagtaaatgcattaatgtccagtcaaccaagtaaaacaaatgtacaaaagaaacaaaaacggaatattgttgtaggaactacttcaaccatctacaactgaaagcaacaataattcaacattagatttaggtgacaacaaaaattattcaataaggtgcccattcttaacatcttgatgccgcatttgtactaccaaatcgaaaataatattgccaaaccccaatatgctagctccaggtaatatacaagaacaagagaaaaagcggcaccaaacacatacagcgaaggagaagaattgtcaaggtctcatgtggcataaactctgtgaccatcagttgctggccactctcccagcagcagccgatcagattggacagccggtcactccacaacctcccaatagcccttgcgtcatcctacacagacacaagaagagccattcaatcgatccaccaaaggctatggcctatgggggcactattgcagatgagacaaccccatggtgtaagttgaacgaactaagaattggcggaagtcgagccagacagaacggataaggtgcttgatagctacggtttggcccatgctatgaagagtccgcagtagacaatgtcacctttctgcgacacaatgtggtcgggaaagaacccatttgtcgcccttgagagctcagcgaaggtgtactcggtgaagttgaacatcaagatgccatcagctgcacgtctcaatagaccaataccattagaatcagcactaagaataggacagtcaaaatcagaaatagaatctcgcaaaactcacgaggtgcccagaagctcgcatacaggatgaccttgtggattgtgttagtgtttataatgcctcccttgtctgtagcgaaagaatatcaagtgtgtaaacagactcaccactgttgaaaaaaaatatacttgtgtcttccaaacagcgtcttccaaacagccaagcattgcaggttcctctctcgaaagtagagtgtgaggggaaagaatcatattaatacacagcttccattcctcgaccaaattctcgccagcggaccgggactaaaggaaaatccttttgcaaataaaatttgtaaatcttaaacatccatccacggtcattatcaagcctttcacagctcgatattcataatcctctgaatctttctcatcatcatctaagtttcatcatgatcatcatctggaacatcgtcttctcctttttgtaaaaattcctccaaatttggagtgtcattaattaagagattcttaatctcagcatcaatcttgatataagactttgcatcttggaggatgaaatagaaagaatcactaacaatttgaccagatcttaaatccatatgtaagggtgtatgatagatattacccaatttgagtgttagtagctgaactaccaaaacccagtctagcctgaagcgaataggaagaatccggatcagtggcgtacctaggatttttcaactggggtttgataaactaattaatttataaaataatataatattatcttattattatataatattatatatttttaatattttattttatattgttttttctaaatatttacaaaaattaacattagtttttcttctatttgcatcctattttatatattataagttattttggttttttctgatttaaatttatttaacgttaagcaaatttagagaaaaatgctataaataagaaataaatgttatacccatataattaattttaagttataaaacacaacataagacatataatcgtatatagtaaaagtcacaactcacttgagtaatctatgctttctataaagttaaagcccactaagtctaaatctcaacatacaaccatgccacatcatcacccactagcaataattacatatttaatctcatgcaagcatacaacatgatctactatttatttaattgtacaaatcaacatgcaagcatattcaaccatatcatttgcacaataTtttaactaatctatcacatttacaatatttaacatatacttattaatatgtttcacactaaagcataggtatcatttgactgataaatcctgatgtttcattaTttttttctttgtcctcctaggttgattgtcAaaaaatatatattgagaattgcttagtaatttccgcagcaaagcgcggggagtcaactagtatttatagtgcactatgatcattagattcataacaaatgtcactccctaatttattctagtttatccatataaattatagatatttatatgactagagatacttgagggcctctgcccaccatcacagctcacagaactatagatatatggctatggtggtgtgaagtacccaagttggttaaaacaaaatcgttttaggagactgaaatgactaaggcctgtttgattcagcttaggattattataatctggattattaggagtaagctgaaacaaacaagtagattattatgctagattattataatctataagccagattactataatccaataatctcttatagaggagctttttccagattattgagtggctaaagacccactacccttagatgcctctaataatccagataaacaaacaacacgtagcttattttatgtcagcttattataatccagcttggagtaatctaatttaataatctagattacaataatcttaagctgaaacaaacagggccttagactcactaaaggaatgttccaatctctaagctcttctagatattagtaagctttttattcatcttcgtgagcttacactcaattgtcttaccaagctagaaaggttgccgaggcttccaagagtctatatacactaatggagaaaccatctttcgtgtgttgggcaaaaaccacaatagtcccggttcaaccaaaaaccgggactaaaaatcatttttttatcccggttaaaaagcccaacacgtcgggactaaaaatgatccctatcacttatcctcttctcctcatcttttaactcctcctcctccctttcctcctctctctctctctctttcctctctcttatcctctccttttctttttcttgcaacagagaggagcaagcagcaccggcctgcgggcggcggtggcgggcagcggcccgaggcaatggcgatggcggccagtgcggcggtggaggaacaagcagttatcgttgattttgtggattatctgtgaatttttttttatttgtgatgtgtttggatctgtaaatttgtgatgtgaattatgaatgtggatgattttgtgatttttctgtgaatgtggatgattttattattgagtttggttagaaatcaatatgcaaataacaacaataaagcaatgtaaaaaataaaaaaaaactttagttacggttggtgccatctttagtcccgggtatttgaaccgagactaaagatagcgatctttagtcctagattcgtaaccccggtttgctacccgaggctacagagggttacaaaccagaggtacaattgctttctccaccagtgatatgttgtcgtgtcaagctctgattcttacttgtgtagaagatgtgtagatgataagatcactcgttgtcaagcgattgagcattgaatgttaggtacatctggagcgaatagaaaggcttgcagacaagcaggctgacaagtttgacaccatcccgttggatatatttggcagatgtgatgagttgccaacaaggcttgtccgaggccagataagagaggaagattactcactatttctgtttcctactccctccatcataaaaagagacaaacattggtttccgtgtccaacgtttgaccgtctgtcttatttaaaaaaattatgaaaaaaaattaaaagacaagttacgcataaaatattaatcatgttttatcatctaacaacaatgaaaatacgaattataaaaaaatttcatataaaacgggcagttaaagttggacacgaaaactcagggtttgccTttttttttgatacagagggagtacatcggtagaatgacttattatcgcagattgtgccataacagacactgtcctgcatagggatggcaatcgggcgtgacgggcacgggtagtgcctacccatacccatgcccgtgagattatttgtgcccgtgggtatacccattactacatgacgggtaaggatggttacccatgcccattgcccgcgggcgccttatgcccgcgggcgtgcccgtttacctgccacaacaaaagcagtggaacaaaaagtctacaagctactaacttcgaatcgaacttaaaacatcaaatattctccgtctcggtgtcgtgtctctcctctgacggcaatagagtaagaggagagaaataataagggaaataaaaggaaaaccgtagaaaacaaagaacgtggcttatgtattctagtggattttactcctagcctacatgtaagttagatttcgcgggtaaatgggcaaagcgggcatgggtagtgattacccatacccatgcccatttacccatcgggcatagtttttgaaccaataagatacccatgggtataaaatggagaacaaacccaaccctaatagggtttttacccGcgggtaaacgggcaaacgggcacaattgccatccctagtcctgcagaactacttgagaaactctgcatccctaacttggttgttcttatcgggtcttccctccatcacatcaatcccttctgaggtgatgaagtctctaactatgcttcaggaattgttcatcatcggttgtgcccagattacctgtttgcaaggcctaaatcatctcagtagctttcgatccctcgacatttcgcagtgtccgaaccttatgatgaaccttatgatggaccttctctagatactgggataattctctgagaaccaagtgacattgctacatctttgaatcgagttgtgaccaggaccttactccctttcttccctaccttcaatggagaaagtagttgattcagtttgtcctgtgcacttgcatccttctcatgccatatgtcatctaatacaagcaagaatcttttgccagttagttctgcctctaacttcatctgtaatgtgtcaaggttactaaactcactggatggcttccctgtagctgcctcgagcatcttttggtaaattttgtccacactgaaacctggtgaaacataaatccacatgacagggaaaaagtagctgtccatcttttcataactgcaaacatgttgggctaacgttgtcttcccagaaccagcaatgccatagatgctaatcactgaataacacttgctgttccagcagctttgttcacaatcacctgttgcttcattgcgggctggatccagccttgggccaagtccagtgatggcccagcctattttggcccatattagacttaacattgtgaaaactagtctaagcccatagtcctttaggcccat

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CDS seq

atgggcctaaaggactatgggcttagactagttttcacaatgttaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccatccaacaagggaggcattataaacactaacacaatccacaaggtcatcctgtatgcgagcttctgggcacctcctgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccacattgtgtcgcagaaagccccgcccctgtccccttacccttccccttctcctctccggtcgccaccacacatctcaggaggcaggaagtcctgccccgacgacgaggagaaggcgcgatgcggaaggccagaagctagtggtcatatctggcttccccaagcctgggtcagcgacggtaggagcacgacccgccgatcgcatcctcgctgcaacagcgctgctcgatgcctccaccaggaccgagctcgcttctccgcctctctcggtttccgagcgtgcccccaccccctcaccgatggccggcaacctcgccaaagccgtgctgctccccggaagctcgcgctcgggccctggttgaggaggttcgagataggcgtcgttccgcccagcaaggtttctcaagaagaggagtaa

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Protein seq

MGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGFSVDKIYQKMLEAATGKPSNKGGIINTNTIHKVILYASFWAPPDGILMFNFTEYTFAELSRATNGFFPDHIVSQKAPPLSPYPSPSPLRSPPHISGGRKSCPDDEEKARCGRPEASGHIWLPQAWVSDGRSTTRRSHPRCNSAARCLHQDRARFSASLGFRACPHPLTDGRQPRQSRAAPRKLALGPWLRRFEIGVVPPSKVSQEEE

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_04g0000530 OsLaMu_04g0000530.01 Chr04 731884 738384 - NAM
CDS seq

atgggcctaaaggactatgggcttagactagttttcacaatgttaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccatccaacaagggaggcattataaacactaacacaatccacaaggtcatcctgtatgcgagcttctgggcacctcctgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccacattgtgtcgcagaaagccccgcccctgtccccttacccttccccttctcctctccggtcgccaccacacatctcaggaggcaggaagtcctgccccgacgacgaggagaaggcgcgatgcggaaggccagaagctagtggtcatatctggcttccccaagcctgggtcagcgacggtaggagcacgacccgccgatcgcatcctcgctgcaacagcgctgctcgatgcctccaccaggaccgagctcgcttctccgcctctctcggtttccgagcgtgcccccaccccctcaccgatggccggcaacctcgccaaagccgtgctgctccccggaagctcgcgctcgggccctggttgaggaggttcgagataggcgtcgttccgcccagcaaggtttctcaagaagaggagtaa

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Protein seq

MGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGFSVDKIYQKMLEAATGKPSNKGGIINTNTIHKVILYASFWAPPDGILMFNFTEYTFAELSRATNGFFPDHIVSQKAPPLSPYPSPSPLRSPPHISGGRKSCPDDEEKARCGRPEASGHIWLPQAWVSDGRSTTRRSHPRCNSAARCLHQDRARFSASLGFRACPHPLTDGRQPRQSRAAPRKLALGPWLRRFEIGVVPPSKVSQEEE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0111100 SBH 0.220501 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g02030 SBH 0.145561 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0111100 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0000530 SBH 0.119934 16.879185 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0000560 RBH 0.076562 0.0 0.415418
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0000530 SBH 0.267224 13.659175 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0000590 SBH 0.0 0.036378 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0000520 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0008900 RBH 0 0 2.044621
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0000550 SBH 0.069508 0.167882 0.088245
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0011700 RBH 0 0.0469925 7.425858
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0000511 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0000540 SBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0000550 SBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G000550 SBH 0.265588 0.000000 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0000510 SBH 0.507399 6.560834 0.641795
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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