Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0000560 | OGI:04001630 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:676930-684401 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagtctccctctgacccctccttgccgttcccgttgaccttgttttttttccctctactgtattgccttaaaacatgtgaacctaattgcttaatcttttccaaccaaattccagctggtaacatctatccatgcatgttcatgtaactagtccagccctagcttttaaccaataggctacagcaaaacgatgtgcaatcttcttgctcaagtctgttgacacttgacactcaggcagaacattgtacctggaatcttgcagatgtcaaggagaaccgagctgaagctgggataagaaggccattgaacacgaaacaaagggactggaggctgcaaactgtgaagaaggcaaccctatacttggactaaaacatgatggcatatgtttggatagcagtgatttagaaccaactccagtattagtttaaattggaacgaaatctcacatactctctgtagtacttgccatactggattagggtctactctacttgatttgtggaactgaatgaattttctggaggcaaatttcattgtaaggcacagttatttctgagttacattctgagcataacacacaataggatggcaaatatatctgggaagcaatacattctatggaatcactcattttgggtactgaatttttctgtgtattctctactgtttcaagctcatgatcgtacaaagtgtgatgaattctctgcagttgactgcatttgaaagctgttctcatgcaagtgttcatgatgtattattcatcagtacattgttgtgtacatgtttgttctctcagtcctcacaaaggatacaagcggactgagtacaaatttatttattcagacttggcatcaagcaagcaagctagctcgtcacaatctacactaagctccatgcttactccgcttcttgagaaaccttgctgggctgaacgacgcctatctcgaacctcctcaaccagggcccgagagcgagcttccggggagcagcacggctttggcgaggttgccggccatcggtgagggggtgggggcacgctcggaaaccgagagaggcagagaagcgagctcggtcctggtggaggcatcgagcagcgctgttgcagcgaggatgcgatcggcgggtcgtgctcctaccgtcgctgacccaggcttggggaagccagatatgaccactagcttctggccttccgcatcgcgccttctcctcgtcgtcggggcaggacttcctgcctcctgagatgtgtggtggcgaccggagaggagaaggggaagggtaaggggacaggggcggggctgggcattatggttttaccctttggatgtttaataccatgtggactgggcattcggtactgccaggtaccgattcttgccagccgtccgatcataatgcatcaacggcctaaatttggtaccgccctcacatgatggacggtaaaattcctctaaaaataaacaatggtaaataacatttacatagaaagttttttttaaccccactggggaaaaaatatcaggggcaagaacatggacatacacaacaagcgtctacaagaattagcttataatagaagtccttacttcacgatcaaccataaacagttaaattcatgaaacacatcactcaaggaataaacatacgtgtccccctaacacatacttcttccatttcataatgtaacactttctagcattgtccacattcatatatatgctaatgaatttggacacatatatatgttcagatttattaatatctatatgaatatgggtaatgttagaaagtcttacattgcgaaccggagagagtaacatctgtgggagaaaaatcagtgtcagagctcttcttgtcactggtgttcattacaccaaagcatgacagcctggggttaccatcctacagttcaccatcccaggaaaaaaaagaacattatatgccttgtttctgaagcccaagctaagaagcaactaagtagcacaagtactgactcaccgaatcaaacataacttttcttgaattgaaattatggtacatatgtcttcccttagtacagcaatacttcaatgcttgtgccacatagtatgcaacccgtaccctcattacccagctcaacggagggttcttccctaccaaggataggcaccatgagtgcaaaatgtagataatacaaatgcaaataagtcttctccaatggaaaaccttgaaacgcaaaaaggaggcaaactctccatttcacagatgccatgagaaactcagatgtcttctaaaaaggcaacaaataatgaaaacatcttgatgccaactagtattaccttaaacagaacactaataatgagcatttatatatagatgagtaaatgcattaatgtccagtcaaccaagtaaaacaaatgtacaaaagaaacaaaaacggaatattgttgtaggaactacttcaaccatctacaactgaaagcaacaataattcaacattagatttaggtgacaacaaaaattattcaataaggtgcccattcttaacatcttgatgccacatttgtactaccaaatcgaaaataatattgccaaaccccaatatgctagctccaggtaatatacaagaacaagagaaaaagcggcaccaaacacatacagcgaaggagacgaattgtcaaggtctcatgtggcataaactctgtgaccatcagttgctggccactctcccagcagcagccgatcagattggacagccggtcactccacaacctcccaatagcccttgcgtcatcctacacagacacaagaagagccattcaatcgatccaccaaaggctatggcctatgggggcactattgcagatgagacaaccccatggtgtaagctgaacgaactaagaattggcggaagtcgagccagacagaacgtataaggtgcttgatagctacggtttggcccatgctatgaagagtccgcagtagacaatgtcacctttctgcgacacaatatggtcgggaaagaacccatttgtcgcccttgagagctcagcgaaggtgtactcggtgaagttgaacatcaagatgccatcagctgcacgtctcaatagaccaataccattagaatcagcactaagaataggacagtcaaaatcagaaatagaatctcgcaaaactcacgaggtgcccagaagctcgcatacaggatgaccttgtggattgtgttagtgtttataatgcctcccttgtctgtagcgaaagaatatacttgtgtcttccaaacagcgtcttccaaacagccaagcattgcaggttcctctctcgaaagtagagtgtgaggggaaagaatcatagtaatacacagcttccactcctcgaccaaattctcgccagcggaccgggactaaaggaaaatccttttgtgaataaaatttgtaaatcttaaacatccatccacggtcattatcaagcctttcacagctcgatattcataatcctctgaatctttctcatcatcatctaagtttcatcatgatcatcatctggaacatcgtcttctcctttttgtaaaaattcctccaaatttggagtgtcattaattaagagattcttaatctcagcatcaatcttgatataagactttgcatcttggaggatgaaatagaaagaatcactaacaatttgaccagatcttaaatccatatgtaagggtgtatgatagatattacccaattcgagtgttagtagctgaactaccaaaacccagtctagcctgaagcgaataggaagaatccggatcagtggcgtacctaggatttttcaactggggtttgataaactaattaatttataaaataatataatattatcttattattgtataatattatatatttttaatattttattttatattgttttttctaaatatttacaaaaattaacattagtttttcttctatttgcatcctattttatatattataagttattttggttttttctgatttaaatttatttaacgttaagcaaatttagagaaaaatgctataaataagaaataaatgttatacccatataattaattttaagttataaaacacaacataagacatataatcgtatatagtaaaagtcacaactcacttgagtaatctatgctttctataaagttaaagcccactaagtctaaatctcaacatacaaccatgccacatcatcacccactagcaataattacatatttaatctcatgcaagcatacaacatgatctactatttatttaattgtacaaatcaacatgcaagcatattcaaccatatcatttgcacaatattttaactaatctatcacatttacaatatttaacatatacttattaatatgtttcacactaaagcataggtatcatttgactgataaatcctgatgtttcattattttttctttgtcctcctaggttgattgtcaaaaaatatatattgagaattgcttagtaattcccgcagcaaagcgcggggagtcaactagtatttatagtgcactatgatcattagattcataacaaatgtcactccctaatttattctagtttatccatataaattatagatatttatatgactagagatacttgagggcctctgcccaccatcacagctcacagaactatagatatgtggctatggtggtgtgaagtacccaagttggttaaaacaaaatcgttttaggagactgaaatgactaaggccctgtttgattcagcttaggattattataatctggattattaggagtaagctaaaacaaacaagtagattattatgctagattattataatctataagccagattactataatccaataatctcctctagaggagctttttccagattattgagtggctaaagacccactacccttagatgcctctaataatccagacaaacaaacaacacgtagcttattttatgtcagcttattataatccagcttggagtaatctaatttaataatctagattacaataatcttaagctgaaacaaacagggccttagactcactaaaggaatgttccaatctctaagctcttctagatattagtaagctttttattcatcttcgtgagcttacactcaattgtcttaccaagctaaaaaggttgccgaggcttccaagagtctatatacactaatggagaaaccatctttcgtgtgttgggtaaaaaccacaatagtcccggttcaaccaaaaaccgggactaaaaatcattttttgtcccggttaaaaagcccaacgcgccgggactaaaaatgatccctatcacttatcctctcctcctcatcttttaacttctcctcctccctttcctcctctctctctctttcctctctcttatcctctccttttctttttcttgcaacagagaggagcaagcagcaccggcctgcgggcggcggtggcgggcagcgacccgaggcaatggcgatggcggccggtgcggcggtggaggaacaagcagttatcgttgattttgtggattatctgtgaattttttttgatttgtgatgagtttggatctgtaaatttgtgatgtgaattatgaatgtggatgattttgtgatttttctgtgaatgtggatgattttattattgagtttggttagaaatcaatatgcaaataacaacaataaagcaatgaaaaaaataaaaaaaaactttagttacggttggtgccatctttagtcccgggtatttgaaccgagactaaagatagcgatctttagtcctaaattcgtaaccccggtttgctacccgaggctatagggggttacaaaccagaggtacaaatgctttctccaccagtgatatgttgtcgtgtcaagctctgattcttactccctccgtcctataatataagggattttgagtttttgcttgcaacgtttgaccactcgtcttatttaatttttttaaaaattattatttattttatttgtgacttactttattatctacagtactttaagcacaactttttattttttatatttgtaaaaaaaatttaaataagacaagtgatcaaatattgtaattaaaaactcaaaatcccttatatgtgggacggagggagtacttgtgtagaagatgtgtagatgataagatcactcgttatcaagcgagcatctcagattgagcattgaatgttaggtacatctggagcgaatagaaaggcttgcagacaagcagcctgacaagtttgacaccatcccgttggatatatttggcagatgtgatgagttgccaacaaggcttgtccgaggccagataagagaggaagattactcactatttctgtttcctactccctccatcctaaaaaaaagacaaaccctggtttccgtgcccaacgtttgaccgtccgtcttatttgaaaaaattatgaaaaaaaattaaaagacaagttacgcataaaatattaatcatgttttatcatctaacaacaataaaaatacgaattataaaaaaatttcatataaaacgggcagttaaatttggacacgaaaacccagggtttgcctttttttggtaaagagggagtacatcggtagaatgacttattatcgcagattgtgccataacagacactgtcctgcagaactacttgagaaactctgcatccctaacttggttgttcttatcgggtcttccctccatcacatcaatcccttctgaggtgatgaagtctctaactatgcttcaggaattgttcatcatcggttgtgcccagattacctgtttgcaaggcctaaatcatctcagtagctttcgatcccacgacatttcgcagtgtccgaacattatgatggaccttctctaggtactgggataattctctgagaaccaagtgacattgctacatctttgaatcgagttgtgaccaggaccttactccctttcttccctaccttcaatggagaaagtagttgattcagtttgtcctgtgcacttgcatccttctcatgccatatgtcatctaatacaagcaagaatcttttgccagttagttctgcctctaacttcatctgtaatgtgtcaaggttactaaactcactggttggcttccctgtagctgcctcgagcatcttttggtaaattttgtccacactgaaacctggtgaaacataaatccacatgacagggaaaaagtagctgtccatcttttcataactgcaaacatgttgggctaacgttgtcttcccagaaccagcaatgccatagatgctaatcactgaataacacttgctgttccagcagctttgttcacaatcacctgttgcttcattgcgggctggatccagccttgggccaagtccagtgatggcccagcctattttggcccatattagacttagcattgtgaaaactagtctaagcccatagtcctttaggcccatggcccagatgatccaggagttgggttcgcccat
More
|
||||||||||
| CDS seq | atgggcgaacccaactcctggatcatctgggccatgggcctaaaggactatgggcttagactagttttcacaatgctaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccaaccactgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccatattgtgtcgcagaaagccccgcccctgtccccttacccttccccttctcctctccggtcgccaccacacatctcaggaggcaggaagtcctgccccgacgacgaggagaaggcgcgatgcggaaggccagaagctagtggtcatatctggcttccccaagcctgggtcagcgacggtaggagcacgacccgccgatcgcatcctcgctgcaacagcgctgctcgatgcctccaccaggaccgagctcgcttctctgcctctctcggtttccgagcgtgcccccaccccctcaccgatggccggcaacctcgccaaagccgtgctgctccccggaagctcgctctcgggccctggttgaggaggttcgagataggcgtcgttcagcccagcaaggtttctcaagaagcggatagagggaaaaaaaacaaggtcaacgggaacggcaaggaggggtcagagggagactag
More
|
||||||||||
| Protein seq | MGEPNSWIIWAMGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGFSVDKIYQKMLEAATGKPTTDGILMFNFTEYTFAELSRATNGFFPDHIVSQKAPPLSPYPSPSPLRSPPHISGGRKSCPDDEEKARCGRPEASGHIWLPQAWVSDGRSTTRRSHPRCNSAARCLHQDRARFSASLGFRACPHPLTDGRQPRQSRAAPRKLALGPWLRRFEIGVVQPSKVSQEADRGKKNKVNGNGKEGSEGD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0000560 | OsKeNa_04g0000560.01 | Chr04 | 676930 | 684401 | - | NAM | ||
| CDS seq | atgggcgaacccaactcctggatcatctgggccatgggcctaaaggactatgggcttagactagttttcacaatgctaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccaaccactgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccatattgtgtcgcagaaagccccgcccctgtccccttacccttccccttctcctctccggtcgccaccacacatctcaggaggcaggaagtcctgccccgacgacgaggagaaggcgcgatgcggaaggccagaagctagtggtcatatctggcttccccaagcctgggtcagcgacggtaggagcacgacccgccgatcgcatcctcgctgcaacagcgctgctcgatgcctccaccaggaccgagctcgcttctctgcctctctcggtttccgagcgtgcccccaccccctcaccgatggccggcaacctcgccaaagccgtgctgctccccggaagctcgctctcgggccctggttgaggaggttcgagataggcgtcgttcagcccagcaaggtttctcaagaagcggatagagggaaaaaaaacaaggtcaacgggaacggcaaggaggggtcagagggagactag
More
|
|||||||
| Protein seq | MGEPNSWIIWAMGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGFSVDKIYQKMLEAATGKPTTDGILMFNFTEYTFAELSRATNGFFPDHIVSQKAPPLSPYPSPSPLRSPPHISGGRKSCPDDEEKARCGRPEASGHIWLPQAWVSDGRSTTRRSHPRCNSAARCLHQDRARFSASLGFRACPHPLTDGRQPRQSRAAPRKLALGPWLRRFEIGVVQPSKVSQEADRGKKNKVNGNGKEGSEGD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.076562 | 0.0 | 0.415418 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111100 | SBH | 0.220501 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02030 | SBH | 0.145561 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000530 | SBH | 0.119934 | 16.879185 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000530 | SBH | 0.267224 | 13.659175 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000590 | SBH | 0.0 | 0.036378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0008900 | RBH | 0 | 0 | 2.044621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000550 | SBH | 0.069508 | 0.167882 | 0.088245 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0011700 | RBH | 0 | 0.0469925 | 7.425858 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000511 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000540 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000550 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000520 | SBH | 0.000000 | 0.252064 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000550 | SBH | 0.265588 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000510 | SBH | 0.507399 | 6.560834 | 0.641795 |
