Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0034720 | OGI:03087420 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:33763523-33768455 | ||||||||
| Gene Symbol | MEL1, mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c | ||||||||||
| DNA seq | ctacaaattgtgttgtacctcatgaatgctctgttccctctgctgggggcattgaccagttgctctaagcatttttttcatacaacctggcacacctacaatcttgcacacctacaaccatatttgtatgaacaaactatacacaacatgcacaagtcaggtagaagtaaatggatgatgaatcaacctcgataggcaagtatataggatgtgaatcaccaccagactgtaggcagggccaagaagcatacttcagtctgtaattgtacctatcccagaagtgctgaaccacacttatccttgtcccaatattatcaacagaaaatctaagatcaaatactaggcatcagtttggagaaaacacgtaaagctcatgctataaaatagtgaacaagcatggtaacaaaatgtaggtcccaaaaaaggatgataatgcattgctatacccaggagtcaggacagtaaaaatatgtgtaatgcatcgtttacacatcaattaagttgaacaattaaggacatttaatagcattgatagatctcaaaggcacggacattcatatctaaggcataacccttttgaaaggataaaattgtttccctcccacatccacaaacaattaatagactaatatgcccaagatccttaaacaaagacatttcaagtattccatcaacgatctatattgatttcctgaaacttagagcatgtaaacaaaaaagtagttatagcagaagcagaggaaatataagtacatcagctggctcataggaatgggggtaatccctgttatcttgtatcttctgatttggtcatcttggtggtttgttgctatgcaaaccccacgtaatgttttcttgatctgaacatgttaaaaaaaatgagagttagaatcagtattacatgattttgtgaattcaatcagtagatatattaccttcacatgatcccagtctgacaaaggtcttgaggtgtcgcatatgttcaggaactcctccacaaattgaatcactgtcgcgggattaaaaaagggtattgcagatatacctggatgaagcatatcaaacagtagttagcatctgaaaagatcacttccattcagcgaaaactgataggctaactgacaaggaagtaccaatattcagcgaaaggcccatctgtgttgagcgcaggctctgatagtaacctctccaacactccagtttttgcatagagaagaatctgtacactgtgacataactgcagaaaaagtagttgtcaatacagcattattagtaccctagtgagtaagtgatcaagcaaaagtcaaatcaaacacaaaaagaaatcatacttccaagatggtgactccctgcattcttatgaagtagtgtttttcagtctcagattattgtgtttctcttcttcagggctggcagaacagacttgtaccacttccagtttttgcttgtaagacagtgggatatgccaaaaagttgatatatccagtttttgatatatcactttttggcatatcccactgtcttacaagcaaaaactggaagtggtacaagtctgttctgccagccctgaagaagagaaacataataatctgagactgaaaaacactaattcataagaatgaaaatctctagctagcaccatacaaacctttttaaagacaggcagtttgccaccacaaactcctccgattcaaaagggagtgaacaagtgctatagagactctttgttccattaaagacaggcagtttgccaccaagagatgtcctctcatcattgggtacttccctatttgttgctcttgattttgactcaggattgattgaaacctgtaacataatccaaaaggaagataggcagtttttttatatatataaataggaaaatattagatcaacttaacaagaactctgcagataaacatcacataacaaagtaatttcagatgaaagcagttaaccatcgcttatacgccaaactactcaaaatttagtgtgtttcgtctagacctaaatgagtagttcagtataagttgagtagtacacacattatccgagccgattgattggggaaatgaaggcagaaaccacAaaaaaaaaaaaaaacagaatgccccaaagtaacgaaatctaaatcagctagggaccaacagaaatcaagcaacaagagattgatccttctccattcaagtcacgatagaggtagaactacgctgctatgctacggcgtacgacacttacatggggcgggaatccatggcggacgctaaagcctagaggggaatcgccggcgaagccttgaggaatagggagaagtgtcggacagtgggagttgatgattagcgaggaaagatggatgatatagggggttagcgttcttcgaaggcccaccaaagcccatagaaactgggccaagaactcagaaatcagaaaccgacaccttaaaaagcccaaaaacaaaataacaaatggaactactactgaacaggaaacgaggttgcaataattccacctgaagaatcgttattgaacgaaaatatggtactcggaacaagtctactataagctagcacgtatgctcaaacacgaagtcttattaacgaacatatgactgctctttttttggtacggaataaactttttagttaaaaggcgtacaaaattatgaatgagaaagacatcccggtaaagacaacaatttaattttcatgaaatttgctaaatagcagaaaacacataaccaaaagccacatctatattcacagagttttcaaacgtggatccacccctctacttctgcaaaccatgcaagcgacagacggtcgctagtccgctgctaaaaagaaaaaaaaatcgattggatgcatgcagaagttcacgcgaaggctttgcatgcatacagggagaacaagtttagcatgtcccttgcaagaaaacagcaagcgaacgcatccgcttacacaaaaatggcagtctccaaaagacaacaaaaaaaagagtcaaaaccagagtccagaggtagaaccgaccgggcagggcacagagactcagagaggtttcgatcgtcttcttccatctctcacaaaataaaaagggaaagcaaacttgtaaagtagaacaaaacgatgcaaaacctttgctcttgcagagcgaagaaagacccgacgagctcccacgagggagagatcagagctacctttgtacgaaatcagcaactccaaacagtgtacagtaccaaacgttctgaagaaaacgggatgttgcgcgcatgtacgccagtgcgtttagcagaggagatgcgcagtacatgtacatgcatgtcacgaaaacgaacgcaacgaaacgcttcgaatgggtgagctgcgtgtgctgcggccatgagatatctgtcgacatagatttctagcactaaattagcagcgagcaccgaaggtggaaaaggccaaaaaaagaaaaaaaagaggtcaaaaaaacgagaagaaactttatgcaagaaacgaaacgcgacgctccggccaacacccatgaaatggatgatatcggaagcctcggtcatgcaaaactttaaacgaaagcaccagagaaacgaacttgcaatcgaaagaacgaaataaaaggatcaagaagcaaacataatccgtacaaagaagcaaaactttgtaaagtagtagagccaaacgatggaaaattgaaccgagcaacctttgcttgcagagggaaacacccgaccatctcccacgagggagagatgatcaggcctacccttttacgaaacgttcccaagtaaacaatgtacatgcatatcaccaaattaaacgaacacaacgaaaggcttcgaacgggtgagctgcgtgtgctgaggccatgagatttctctagacctcgcttagatctctagcaccaaactagcagcgagcaccgaattgaagtggaaaattccaaaaaaacggagaagaaactttatgcaaaaaaggagacgcgactctccgaccaaacacccacgaaataggaagagatgggaagcctcgctccatgcaaaactgccaacgaaagcagcagagagattaacttgcaaattgcaatcgacacagcgaaacaaaagcatccagaagcaagcaaaatccatgcatacacacatgccaacataagtacgggagcacagtagtagacgccatgcatggagtatacgtagatctagaggcgggaaggggagggaaagagggtgaggtgagctcacatcgtagtgaaagaggttgttgtcggcgacgttggcgaggaagtggttcgcgcggatcatcaccttcttcccggccgctccgaaccccggccgcgcagggtgggcgagccccttcttggacaccggcgcacgatccttgtccgacgccaccgacgcctcgccagccggcgcggccgcggccgacgccgccgctgctggtggcgccattgcggtctccgacacgaacagcttctgctctacctccttggccagagccgtggcagacggcgccgaggaggacgacgaggaagccggcgcggccgccggctggtacggagccggagccgacgagtgcgacggcggaggcgcccggatggtgacgggcgtgctgcgcgcgtagccaccgagaggcaccggaacccccggggagggcgcgcggtacacggccccgggctggtacgaggcctggtggtgcagcgctggcatcggctccccgtggacgacggccggcgggcccggctgcgggtactgcggcggaggaggccccggccgcggcgtcatccccggcggcggccacacggaaccagtggcgggacggtacggcggggctccacccccgccgccgccgccacggccagggtcggcgcggccggagtacgtcggccgctgctgctgctcgccgccgcggcctcctcggccgcctccgccgcggtgagccat
More
|
||||||||||
| CDS seq | atggctcaccgcggcggaggcggccgaggaggccgcggcggcgagcagcagcagcggccgacgtactccggccgcgccgaccctggccgtggcggcggcggcgggggtggagccccgccgtaccgtcccgccactggttccgtgtggccgccgccggggatgacgccgcggccggggcctcctccgccgcagtacccgcagccgggcccgccggccgtcgtccacggggagccgatgccagcgctgcaccaccaggcctcgtaccagcccggggccgtgtaccgcgcgccctccccgggggttccggtgcctctcggtggctacgcgcgcagcacgcccgtcaccatccgggcgcctccgccgtcgcactcgtcggctccggctccgtaccagccggcggccgcgccggcttcctcgtcgtcctcctcggcgccgtctgccacggctctggccaaggaggtagagcagaagctgttcgtgtcggagaccgcaatggcgccaccagcagcggcggcgtcggccgcggccgcgccggctggcgaggcgtcggtggcgtcggacaaggatcgtgcgccggtgtccaagaaggggctcgcccaccctgcgcggccggggttcggagcggccgggaagaaggtgatgatccgcgcgaaccacttcctcgccaacgtcgccgacaacaacctctttcactacgatgtgagctcacctcaccctctttccctccccttcccgcctctagatctacgtatactccatgcatggcgtctactactgtgctcccgtacttatgttggcatgtgtgtttcaatcaatcctgagtcaaaatcaagagcaacaaatagggaagtacccaatgatgagaggacatctcttggtggcaaactgcctgtctttaatggaacaaagagtctctatagcacttgttcactcccttttgaatcggaggagtttgtggtggcaaactgcctgtctttaaaaagggctggcagaacagacttgtaccacttccagtttttgcttgtaagacagtgggatatgccaaaaagtgatatatcaaaaactggatatatcaactttttggcatatcccactgtcttacaagcaaaaactggaagtggtacaatatttgatcttagattttctgttgataatattgggacaaggataagtgtggttcagcacttctgggataggtacaattacagactgaagtatgcttcttggccctgcctacagtctggtggtgattcacatcctatatacttgcctatcgaggtgtgcaagattgtaggtgtgccaggttgtatgaaaaaaatgcttagagcaactggtcaatgcccccagcagagggaacagagcattcatgaggtacaacacaatttgtag
More
|
||||||||||
| Protein seq | MAHRGGGGRGGRGGEQQQRPTYSGRADPGRGGGGGGGAPPYRPATGSVWPPPGMTPRPGPPPPQYPQPGPPAVVHGEPMPALHHQASYQPGAVYRAPSPGVPVPLGGYARSTPVTIRAPPPSHSSAPAPYQPAAAPASSSSSSAPSATALAKEVEQKLFVSETAMAPPAAAASAAAAPAGEASVASDKDRAPVSKKGLAHPARPGFGAAGKKVMIRANHFLANVADNNLFHYDVSSPHPLSLPFPPLDLRILHAWRLLLCSRTYVGMCVSINPESKSRATNREVPNDERTSLGGKLPVFNGTKSLYSTCSLPFESEEFVVANCLSLKRAGRTDLYHFQFLLVRQWDMPKSDISKTGYINFLAYPTVLQAKTGSGTIFDLRFSVDNIGTRISVVQHFWDRYNYRLKYASWPCLQSGGDSHPIYLPIEVCKIVGVPGCMKKMLRATGQCPQQREQSIHEVQHNL |
||||||||||
| Function | Protein argonaute MEL1 [UniProtKB/Swiss-Prot:Q851R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0034720 | OsLaMu_03g0034720.01 | Chr03 | 33763523 | 33768455 | - | NAM | ||
| CDS seq | atggctcaccgcggcggaggcggccgaggaggccgcggcggcgagcagcagcagcggccgacgtactccggccgcgccgaccctggccgtggcggcggcggcgggggtggagccccgccgtaccgtcccgccactggttccgtgtggccgccgccggggatgacgccgcggccggggcctcctccgccgcagtacccgcagccgggcccgccggccgtcgtccacggggagccgatgccagcgctgcaccaccaggcctcgtaccagcccggggccgtgtaccgcgcgccctccccgggggttccggtgcctctcggtggctacgcgcgcagcacgcccgtcaccatccgggcgcctccgccgtcgcactcgtcggctccggctccgtaccagccggcggccgcgccggcttcctcgtcgtcctcctcggcgccgtctgccacggctctggccaaggaggtagagcagaagctgttcgtgtcggagaccgcaatggcgccaccagcagcggcggcgtcggccgcggccgcgccggctggcgaggcgtcggtggcgtcggacaaggatcgtgcgccggtgtccaagaaggggctcgcccaccctgcgcggccggggttcggagcggccgggaagaaggtgatgatccgcgcgaaccacttcctcgccaacgtcgccgacaacaacctctttcactacgatgtgagctcacctcaccctctttccctccccttcccgcctctagatctacgtatactccatgcatggcgtctactactgtgctcccgtacttatgttggcatgtgtgtttcaatcaatcctgagtcaaaatcaagagcaacaaatagggaagtacccaatgatgagaggacatctcttggtggcaaactgcctgtctttaatggaacaaagagtctctatagcacttgttcactcccttttgaatcggaggagtttgtggtggcaaactgcctgtctttaaaaagggctggcagaacagacttgtaccacttccagtttttgcttgtaagacagtgggatatgccaaaaagtgatatatcaaaaactggatatatcaactttttggcatatcccactgtcttacaagcaaaaactggaagtggtacaatatttgatcttagattttctgttgataatattgggacaaggataagtgtggttcagcacttctgggataggtacaattacagactgaagtatgcttcttggccctgcctacagtctggtggtgattcacatcctatatacttgcctatcgaggtgtgcaagattgtaggtgtgccaggttgtatgaaaaaaatgcttagagcaactggtcaatgcccccagcagagggaacagagcattcatgaggtacaacacaatttgtag
More
|
|||||||
| Protein seq | MAHRGGGGRGGRGGEQQQRPTYSGRADPGRGGGGGGGAPPYRPATGSVWPPPGMTPRPGPPPPQYPQPGPPAVVHGEPMPALHHQASYQPGAVYRAPSPGVPVPLGGYARSTPVTIRAPPPSHSSAPAPYQPAAAPASSSSSSAPSATALAKEVEQKLFVSETAMAPPAAAASAAAAPAGEASVASDKDRAPVSKKGLAHPARPGFGAAGKKVMIRANHFLANVADNNLFHYDVSSPHPLSLPFPPLDLRILHAWRLLLCSRTYVGMCVSINPESKSRATNREVPNDERTSLGGKLPVFNGTKSLYSTCSLPFESEEFVVANCLSLKRAGRTDLYHFQFLLVRQWDMPKSDISKTGYINFLAYPTVLQAKTGSGTIFDLRFSVDNIGTRISVVQHFWDRYNYRLKYASWPCLQSGGDSHPIYLPIEVCKIVGVPGCMKKMLRATGQCPQQREQSIHEVQHNL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0800200 | SBH | 0.000000 | 0.039804 | 0.624508 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g57540 | SBH | 0.255901 | 0.452152 | 0.181568 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0800200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035160 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034920 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034740 | RBH | 0.000000 | 0.0 | 2.162802 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0532500 | RBH | 0.575091 | 1.2223465 | 1.0107705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034520 | RBH | 0.021476 | 0.062156 | 0.250655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0531800 | RBH | 0.564787 | 1.105813 | 3.4067085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034680 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0012380 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037800 | SBH | 0.0 | 0.0 | 2.685417 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037570 | SBH | 0.0 | 0.0 | 8.280432 |
