Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g57540 | OGI:03087420 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:32810260-32810682 | ||||||||
| Gene Symbol | MEL1, mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c | ||||||||||
| DNA seq | ATGGCGGCCTACTGCGACGGAGGCGGTGGCCGCGGCGACCCCAGCGGTGGGGGAGGCGGCGGCGGCGTTGGAGCCCCGCCGTACCGTCCCGCTGCTGGCTCCGTGTGGTCGCTGCCGGGGATGACGCCGCGGCCGCCAGGGCCTCCTCCGAAGTACCAGCAACCCGGGCACCAGCCGGCCGTCGTCTACAGGGCGCCGTCGGCCAAGGAGGTCGAGCAGAAGCTGTTCGTGTCGGAGACCGCGCTAGCGCCACCCGCAGCGGCGGCGTCCGCGTCCGCTGGCGAGGCGCCGGTGTCGAAGAAGGGGCTCGCCCACCCTACGCGGCGGCCGGGGTTCGGAACGGCCGGGAACGAGGTGATGATCCGCGCGAACCGCTTCCTCGTCAACGTCGCCGACAACAACCACTACAGCAGAACAAGCTAG
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| CDS seq | ATGGCGGCCTACTGCGACGGAGGCGGTGGCCGCGGCGACCCCAGCGGTGGGGGAGGCGGCGGCGGCGTTGGAGCCCCGCCGTACCGTCCCGCTGCTGGCTCCGTGTGGTCGCTGCCGGGGATGACGCCGCGGCCGCCAGGGCCTCCTCCGAAGTACCAGCAACCCGGGCACCAGCCGGCCGTCGTCTACAGGGCGCCGTCGGCCAAGGAGGTCGAGCAGAAGCTGTTCGTGTCGGAGACCGCGCTAGCGCCACCCGCAGCGGCGGCGTCCGCGTCCGCTGGCGAGGCGCCGGTGTCGAAGAAGGGGCTCGCCCACCCTACGCGGCGGCCGGGGTTCGGAACGGCCGGGAACGAGGTGATGATCCGCGCGAACCGCTTCCTCGTCAACGTCGCCGACAACAACCACTACAGCAGAACAAGCTAG
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| Protein seq | MAAYCDGGGGRGDPSGGGGGGGVGAPPYRPAAGSVWSLPGMTPRPPGPPPKYQQPGHQPAVVYRAPSAKEVEQKLFVSETALAPPAAAASASAGEAPVSKKGLAHPTRRPGFGTAGNEVMIRANRFLVNVADNNHYSRTS |
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| Function | Protein argonaute MEL1 [UniProtKB/Swiss-Prot:Q851R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g57540 | LOC_Os03g57540.1 | Chr03 | 32810260 | 32810682 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCTACTGCGACGGAGGCGGTGGCCGCGGCGACCCCAGCGGTGGGGGAGGCGGCGGCGGCGTTGGAGCCCCGCCGTACCGTCCCGCTGCTGGCTCCGTGTGGTCGCTGCCGGGGATGACGCCGCGGCCGCCAGGGCCTCCTCCGAAGTACCAGCAACCCGGGCACCAGCCGGCCGTCGTCTACAGGGCGCCGTCGGCCAAGGAGGTCGAGCAGAAGCTGTTCGTGTCGGAGACCGCGCTAGCGCCACCCGCAGCGGCGGCGTCCGCGTCCGCTGGCGAGGCGCCGGTGTCGAAGAAGGGGCTCGCCCACCCTACGCGGCGGCCGGGGTTCGGAACGGCCGGGAACGAGGTGATGATCCGCGCGAACCGCTTCCTCGTCAACGTCGCCGACAACAACCACTACAGCAGAACAAGCTAG
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| Protein seq | MAAYCDGGGGRGDPSGGGGGGGVGAPPYRPAAGSVWSLPGMTPRPPGPPPKYQQPGHQPAVVYRAPSAKEVEQKLFVSETALAPPAAAASASAGEAPVSKKGLAHPTRRPGFGTAGNEVMIRANRFLVNVADNNHYSRTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.255901 | 0.452152 | 0.181568 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0800200 | SBH | 0.000000 | 0.039804 | 0.624508 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0800200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037580 | SBH | 0.337890 | 2.936996 | 2.464936 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037270 | SBH | 0.266323 | 0.276383 | 1.726611 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037330 | SBH | 1.091077 | 1.497947 | 5.577277 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034740 | SBH | 0.000000 | 0.0 | 2.162802 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0532500 | RBH | 0.575091 | 1.2223465 | 1.0107705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034520 | SBH | 0.021476 | 0.062156 | 0.250655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0561700 | RBH | 3.7497065 | 6.189769 | 15.1451695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037410 | SBH | 0.086675 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037420 | SBH | 0.099841 | 2.032718 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034680 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038000 | SBH | 0.0 | 0.000000 | 0.350415 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037110 | SBH | 0.028486 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037800 | SBH | 0.0 | 0.0 | 2.685417 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037570 | SBH | 0.0 | 0.0 | 8.280432 |
