Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0033300 | OGI:03084040 | 3/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:32609097-32611991 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtccccgtctcaggcggcgaggaaggcgaggatgaggttgacgtcgaccgccgcggggtcgtcgccctccgcctcggcggcggcgagggcgcgctcggcggtggcgcgcgcctctcggagtcgctcgccgctcggcaccggcttcatcgacaacccgctcagcaccggcttcagcgccgcgccgtccctcgccgccatCcccaccaaccagtccatcggctgggcgtcgtagtgcaggcggcgatggggaaagagaaggcatgcggtggccggcgcgcgagaggacggcggcggtagggaaagagaagacaggcggcggggagggaggggacagctatcgttgcacaatgtttttctggtgctggatctgctggaagacgcatgcaagtcattacttgacagcatcgttgcagagaatgcaaagcgtttctgcttgatctgaatgaagctatctggaggcaatgtaagcatcatttttccatgtaaccatgttcagtatctatctatgccatttgattgcgattcagataaccagaaaacactcacatcagcatgcatgtacccatgttcatacaatgttaggctggagACATacttgtatctttcatgtacaccatgatttacactgtaataaaatcaccaactcgaattagagaagctgaactgtttcgttagtaacacattgcacatgcaggaagaagccacccctcgccgaggagcagcgcgacctcggcgtcagcgatgacggcgaggtagtagttgccgcctcgccagtgggctcaggggacgacgaatccgacgcgtacgtggcctcggcggtgtcccagtggatgcccacggccgtgccggcggcagtggtgagggatctgctccCGcgcttcttgtgcagcacatggtgggcacacctcgacgacggcgaggccggtggctccggcagcgttccgcgtccacgtgacccggatgaggagctccttcccggagtgcagcgaggcactgtacaccaccgtggtcgccgcctgcagcttgcgatccagtgtgccgccgtgcccagagtcaccagcggcggcgacggcgatgccgaccgagctgtcgccgaagcacgacggctcccgcgtcgcctccggctttggtttttcttccggcgagattaggtgctgcTTgctgTtgctgctgcaataaaagaGagagttgacgtggcacgctaacatgtGgggtctacatggggtttcacgctgactcagccgccacgtaagctaaaaccggggtcaaaaccaccgagggacctaaagcgaatggttttgttagttgagggacgtccggtttctggttttgcggtttgaggacgattttgtatctcgatgacaagtcgagggaccttgggtgtactttttcctttatttctcctctatagacaaattttcagatgagggcggctacaaaacgggatcccgttataacgggatagacataTtacatattctcttgcacgaGtatcataggtatcagatcctaagtatcacaggtaccggataacaggtatcacagatatcGgataccatgcaactggtaccacaacagatatcaggtaccgtcttatagaaaggtatcccgtttcaacggaccgttgtttaggttttctgttttaagatatactgcagatacggattaggattcataaaaaggtagccttagcctttgctctcgtaacattaatgcttcttgcatactcccttcgttccataatgttgtaaccatctacgatgggatgagcagattcatagtcctaggatgggtctcatcctatccatgggtctcatcctatccatggttgggacattatgggacggagggagtagcttagcacagcacagctttatacagatgggatgagcagattcatagttctaggatgggtctcatcctatctcatcctatcctaggttgggacattatgggacggagggagtagcttagcacagcacagctttatacacccgtgattgtggctcatggctcatgggtggatctacacaaacctagcattcgaattctaagagccatatcacaagctacactccaagcagcacgtgctgacacgcgcgtcacaacatccatcattttcagtccaaatcttaagcacgcacgcagctctaaacaccacgtaggcgtaataacacaagagtacacagacaagatcacacaccacagtcacattactaagcttaataagcacAaaaagcaaaccgacaacaacgctccggcgacgtcgacggcgacggcgacggcggcggcgaagagaccggtcagtaggggctctggccctgcacgttgccgtgcgggttgtagaggcagatggtgagcgtggcgccggtggtgcaggtggcctgggcgcagccgacctccgccgtgcggcgccacaccacctgggtgtaggtgccgcactgctgccccggcgcgcagctgttgttggcgtgggcgtagtacctcccctgcgccacccacgacgccaccacctccgcggggcgcgccgggtagctcgcccacccctggttcgcgccgtaggggctcccgctcatgtccgcgaacccgcaccgccgcccctgcccgccctgctgctgcgacgtcgtcctcgccgccgccgccgccaggtcgccgctccaccgcagcggcgccaccccgaccgccgcccgcgcctggttgtgcggcgccaggaactcgtccgccgccgccgacgacgacgacgacgcgttcgcctgctgcgccgccacccccgcccccgccccacgaggaaccgcgcgcgcgccgcacgccgcgggcgccgcccacatcgcaagcgcggcgaggacgaagcacgccgcggccatccgctgccaccgagacgacgccgccgccat
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| CDS seq | atggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcggacatgagcgggagcccctacggcgcgaaccaggggtgggcgagctacccggcgcgccccgcggaggtggtggcgtcgtgggtggcgcaggggaggtactacgcccacgccaacaacagctgcgcgccggggcagcagtgcggcacctacacccaggtggtgtggcgccgcacggcggaggtcggctgcgcccaggccacctgcaccaccggcgccacgctcaccatctgcctctacaacccgcacggcaacgcgacgcgggagccgtcgtgcttcggcgacagctcggtcggcatcgccgtcgccgccgctggtgactctgggcacggcggcacactggatcgcaagctgcaggcggcgaccacggtggtgtacagtgcctcgctgcactccgggaaggagctcctcatccgggtcacgtggacgcggaacgctgccggagccaccggcctcgccgtcgtcgagaagcgCGggagcagatccctcaccactgccgccggcacggccgtgggcatccactgggacaccgccgaggccacgtacgcgtcggattcgtcgtcccctgagcccactggcgaggcggcaactactacctcgccgtcatcgctgacgccgaggtcgcgctgctcctcggcgaggggtggcttcttcctgcatatcaagcagaaacgctttgcattctctgcaacgatgctgtcaagtaatgacttgcatgcgtcttccagcagatccagcaccagaaaaacattgtgcaacgatagctgtcccctccctccccgccgcctgtcttctctttccctaccgccgccgtcctctcgcgcgccggccaccgcatgccttctctttccccatcgccgcctgcactacgacgcccagccgatggactggttggtgggGatggcggcgagggacggcgcggcgctgaagccggtgctgagcgggttgtcgatgaagccggtgccgagcggcgagcgactccgagaggcgcgcgccaccgccgagcgcgccctcgccgccgccgaggcggagggcgacgaccccgcggcggtcgacgtcaacctcatcctcgccttcctcgccgcctga
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| Protein seq | MAAASSRWQRMAAACFVLAALAMWAAPAACGARAVPRGAGAGVAAQQANASSSSSAAADEFLAPHNQARAAVGVAPLRWSGDLAAAAARTTSQQQGGQGRRCGFADMSGSPYGANQGWASYPARPAEVVASWVAQGRYYAHANNSCAPGQQCGTYTQVVWRRTAEVGCAQATCTTGATLTICLYNPHGNATREPSCFGDSSVGIAVAAAGDSGHGGTLDRKLQAATTVVYSASLHSGKELLIRVTWTRNAAGATGLAVVEKRGSRSLTTAAGTAVGIHWDTAEATYASDSSSPEPTGEAATTTSPSSLTPRSRCSSARGGFFLHIKQKRFAFSATMLSSNDLHASSSRSSTRKTLCNDSCPLPPRRLSSLSLPPPSSRAPATACLLFPHRRLHYDAQPMDWLVGMAARDGAALKPVLSGLSMKPVPSGERLREARATAERALAAAEAEGDDPAAVDVNLILAFLAA |
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| Function | STS14 protein [UniProtKB/Swiss-Prot:Q41495] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0033300 | OsLaMu_03g0033300.01 | Chr03 | 32609097 | 32611991 | - | NAM | ||
| CDS seq | atggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcggacatgagcgggagcccctacggcgcgaaccaggggtgggcgagctacccggcgcgccccgcggaggtggtggcgtcgtgggtggcgcaggggaggtactacgcccacgccaacaacagctgcgcgccggggcagcagtgcggcacctacacccaggtggtgtggcgccgcacggcggaggtcggctgcgcccaggccacctgcaccaccggcgccacgctcaccatctgcctctacaacccgcacggcaacgcgacgcgggagccgtcgtgcttcggcgacagctcggtcggcatcgccgtcgccgccgctggtgactctgggcacggcggcacactggatcgcaagctgcaggcggcgaccacggtggtgtacagtgcctcgctgcactccgggaaggagctcctcatccgggtcacgtggacgcggaacgctgccggagccaccggcctcgccgtcgtcgagaagcgCGggagcagatccctcaccactgccgccggcacggccgtgggcatccactgggacaccgccgaggccacgtacgcgtcggattcgtcgtcccctgagcccactggcgaggcggcaactactacctcgccgtcatcgctgacgccgaggtcgcgctgctcctcggcgaggggtggcttcttcctgcatatcaagcagaaacgctttgcattctctgcaacgatgctgtcaagtaatgacttgcatgcgtcttccagcagatccagcaccagaaaaacattgtgcaacgatagctgtcccctccctccccgccgcctgtcttctctttccctaccgccgccgtcctctcgcgcgccggccaccgcatgccttctctttccccatcgccgcctgcactacgacgcccagccgatggactggttggtgggGatggcggcgagggacggcgcggcgctgaagccggtgctgagcgggttgtcgatgaagccggtgccgagcggcgagcgactccgagaggcgcgcgccaccgccgagcgcgccctcgccgccgccgaggcggagggcgacgaccccgcggcggtcgacgtcaacctcatcctcgccttcctcgccgcctga
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| Protein seq | MAAASSRWQRMAAACFVLAALAMWAAPAACGARAVPRGAGAGVAAQQANASSSSSAAADEFLAPHNQARAAVGVAPLRWSGDLAAAAARTTSQQQGGQGRRCGFADMSGSPYGANQGWASYPARPAEVVASWVAQGRYYAHANNSCAPGQQCGTYTQVVWRRTAEVGCAQATCTTGATLTICLYNPHGNATREPSCFGDSSVGIAVAAAGDSGHGGTLDRKLQAATTVVYSASLHSGKELLIRVTWTRNAAGATGLAVVEKRGSRSLTTAAGTAVGIHWDTAEATYASDSSSPEPTGEAATTTSPSSLTPRSRCSSARGGFFLHIKQKRFAFSATMLSSNDLHASSSRSSTRKTLCNDSCPLPPRRLSSLSLPPPSSRAPATACLLFPHRRLHYDAQPMDWLVGMAARDGAALKPVLSGLSMKPVPSGERLREARATAERALAAAEAEGDDPAAVDVNLILAFLAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.803999 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52300 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033620 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033320 | SBH | 0.0 | 2.335807 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033380 | SBH | 0.0 | 0.0 | 1.943932 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033700 | SBH | 0.0 | 0.047976 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033320 | RBH | 0.0 | 4.858953 | 2.253210 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512200 | SBH | 1.2226745 | 0.2131895 | 9.1290055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033100 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0512600 | SBH | 1.7656495 | 0 | 17.210148 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033530 | SBH | 0.0 | 14.346010 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033280 | SBH | 0.0 | 10.272633 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033290 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033280 | RBH | 0.0 | 4.817717 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033030 | RBH | 0.0 | 1.683295 | 0.954541 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032870 | SBH | 0.0 | 0.0 | 4.270895 |
