Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0032870 | OGI:03083980 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:32489066-32491224 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttcttcagtggccattactcagctcacctactccagatctcgccatggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcggacatgagcgggagcccctacggcgcgaaccaggggtgggcgagctacccggcgcgccccgcggaggtggtggcgtcgtgggtggcgcaggggaggtactacgcccacgccaacaacagctgcgcgccggggcagcagtgcggcacctacacccaggtggtgtggcgccgcacggcggaggtcggctgcgcccaggccacctgcaccaccggcgccacgctcaccatctgcctctacaacccgcacggcaacgtgcagggccagagcccctactgaccggtctcttcgccgccgccgtcgccgtcgccgtcgacgtcgccggagcgttgttgtcggtttgcttttgtgcttattaagcttagtaatgtgactgtggtgtgtgatcttgtctgtgtactcttgtgttattacgcctacgtggtgtttagagctgcgtgcgtgcttaagatttggactgaaaatgatggatgttgtgacgcgcgtgtcagcacgtgctgcttggagtgtagcttgtgatatggctcttagaattcgaatgctaggtttgtgtagatccacccatgagccatgagccacaatcacgggtgtataaagctgtgctgtgctaagctactccctccgtcccataatatcccaaccatggataggatgagataggatgagacccatactagaactatgaatctgctcatcccatatgtataaagctgtgctgtgctaagctactccctccgtcccataatgtcccaaccatggataggatgagacccatggataggatgagacccatcctaggactatgaatctgctcatcccatcgtagatggttacaacattatggaacgaagggagtatgcaagaagcattaatgttacgagagcaaaggctaaggctacctttttatgaatcctaatccgtatctgcagtatatctgaaaacagaaaacctaaacaacggtccgttgaaacgggataCctttctataagacggttcctgatatctgttgtggtaccagttgcatggtatccgatatctgtgatacctgttatccggtacctgtgatacttaggatctgatacctatgatactcgtgcaagagaataggtaatatgtctatcccattataacgggatcccgttttgtagccgccctcatctgaaaatttgtctatagaggagaaataaaggaaaaagtacacccaaggtccctcgacttgtcatcgagatacaaaatcgtcctcaaaccgcaaaaccagaaaccggacgtccctcaactaacaaaaccattcactttaggtccctcggtggttttgaccccggttttagcttacgtggcggctgagtcagcgtgaaacccatgtagaCcccacatgttagcgtgccacgtcaactctctcttttattgcagcagcaacagcaagcagcacctaatctcgccggaagaaaaaccaaagccggaggcgacgcgggagccgtcgtgcttcggcgacagctcggtcggcatcgccgtcgccgccgctggtgactctgggcacggcggcacactggatcgcaagctgcaggcggcgaccacggtggtgtacagtgcctcgctgcactccgggaaggagctcctcatccgggtcacgtggacgcggaacgctgccggagccaCcggcctcgccgtcgtcgaggtgtgcccaccatgtgctgcacaagaagcgcgggagcagatccctcaccactgccgccggcacggccgtgggcatccactgggacaccgccgaggccacgtacgcgtcggattcgtcgtcccctga
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| CDS seq | atggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcggacatgagcgggagcccctacggcgcgaaccaggggtgggcgagctacccggcgcgccccgcggaggtggtggcgtcgtgggtggcgcaggggaggtactacgcccacgccaacaacagctgcgcgccggggcagcagtgcggcacctacacccaggtggtgtggcgccgcacggcggaggtcggctgcgcccaggccacctgcaccaccggcgccacgctcaccatctgcctctacaacccgcacggcaacgcgacgcgggagccgtcgtgcttcggcgacagctcggtcggcatcgccgtcgccgccgctggtgactctgggcacggcggcacactggatcgcaagctgcaggcggcgaccacggtggtgtacagtgcctcgctgcactccgggaaggagctcctcatccgggtcacgtggacgcggaacgctgccggagccaCcggcctcgccgtcgtcgaggtgtgcccaccatgtgctgcacaagaagcgcgggagcagatccctcaccactgccgccggcacggccgtgggcatccactgggacaccgccgaggccacgtacgcgtcggattcgtcgtcccctga
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| Protein seq | MAAASSRWQRMAAACFVLAALAMWAAPAACGARAVPRGAGAGVAAQQANASSSSSAAADEFLAPHNQARAAVGVAPLRWSGDLAAAAARTTSQQQGGQGRRCGFADMSGSPYGANQGWASYPARPAEVVASWVAQGRYYAHANNSCAPGQQCGTYTQVVWRRTAEVGCAQATCTTGATLTICLYNPHGNATREPSCFGDSSVGIAVAAAGDSGHGGTLDRKLQAATTVVYSASLHSGKELLIRVTWTRNAAGATGLAVVEVCPPCAAQEAREQIPHHCRRHGRGHPLGHRRGHVRVGFVVP |
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| Function | STS14 protein [UniProtKB/Swiss-Prot:Q41495] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032870 | OsNaBo_03g0032870.01 | Chr03 | 32489112 | 32491224 | + | NAM | ||
| CDS seq | atggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcggacatgagcgggagcccctacggcgcgaaccaggggtgggcgagctacccggcgcgccccgcggaggtggtggcgtcgtgggtggcgcaggggaggtactacgcccacgccaacaacagctgcgcgccggggcagcagtgcggcacctacacccaggtggtgtggcgccgcacggcggaggtcggctgcgcccaggccacctgcaccaccggcgccacgctcaccatctgcctctacaacccgcacggcaacgcgacgcgggagccgtcgtgcttcggcgacagctcggtcggcatcgccgtcgccgccgctggtgactctgggcacggcggcacactggatcgcaagctgcaggcggcgaccacggtggtgtacagtgcctcgctgcactccgggaaggagctcctcatccgggtcacgtggacgcggaacgctgccggagccaCcggcctcgccgtcgtcgaggtgtgcccaccatgtgctgcacaagaagcgcgggagcagatccctcaccactgccgccggcacggccgtgggcatccactgggacaccgccgaggccacgtacgcgtcggattcgtcgtcccctga
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| Protein seq | MAAASSRWQRMAAACFVLAALAMWAAPAACGARAVPRGAGAGVAAQQANASSSSSAAADEFLAPHNQARAAVGVAPLRWSGDLAAAAARTTSQQQGGQGRRCGFADMSGSPYGANQGWASYPARPAEVVASWVAQGRYYAHANNSCAPGQQCGTYTQVVWRRTAEVGCAQATCTTGATLTICLYNPHGNATREPSCFGDSSVGIAVAAAGDSGHGGTLDRKLQAATTVVYSASLHSGKELLIRVTWTRNAAGATGLAVVEVCPPCAAQEAREQIPHHCRRHGRGHPLGHRRGHVRVGFVVP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032870 | OsNaBo_03g0032870.02 | Chr03 | 32489066 | 32489976 | + | IsoSeq | ||
| CDS seq | ttcttcagtggccattactcagctcacctactccagatctcgccatggcggcggcgtcgtctcggtggcagcggatggccgcggcgtgcttcgtcctcgccgcgcttgcgatgtgggcggcgcccgcggcgtgcggcgcgcgcgcggttcctcgtggggcgggggcgggggtggcggcgcagcaggcgaacgcgtcgtcgtcgtcgtcggcggcggcggacgagttcctggcgccgcacaaccaggcgcgggcggcggtcggggtggcgccgctgcggtggagcggcgacctggcggcggcggcggcgaggacgacgtcgcagcagcagggcgggcaggggcggcggtgcgggttcgcgg
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| Protein seq | FFSGHYSAHLLQISPWRRRRLGGSGWPRRASSSPRLRCGRRPRRAARARFLVGRGRGWRRSRRTRRRRRRRRRTSSWRRTTRRGRRSGWRRCGGAATWRRRRRGRRRSSRAGRGGGAGSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 4.270895 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52300 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033320 | RBH | 0.0 | 2.335807 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033380 | RBH | 0.0 | 0.0 | 1.943932 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033700 | RBH | 0.0 | 0.047976 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033300 | RBH | 0.0 | 8.629390 | 2.516886 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512200 | RBH | 1.2226745 | 0.2131895 | 9.1290055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033080 | RBH | 0.0 | 0.781972 | 0.323585 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0512600 | RBH | 1.7656495 | 0 | 17.210148 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033530 | RBH | 0.0 | 14.346010 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033280 | RBH | 0.0 | 10.272633 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033270 | RBH | 0.0 | 0.132185 | 0.637346 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033280 | RBH | 0.0 | 4.817717 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033050 | RBH | 0.0 | 1.346343 | 1.019389 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032890 | RBH | 0.0 | 0.0 | 0.0 |
