Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0003990 | OGI:03007630 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:2920496-2923577 | ||||||||
| Gene Symbol | OsRab5A1, OsRab5b, Rab5b | ||||||||||
| DNA seq | gcaattgtacacggagtacttgtttagatgaaactttggtgtggtgggtgtacacaggcacagcaactaagcaactttttttagtaccgatattagattgttttagtaaactaagatgttacacgacggcactattaacatatacaatacgatacgattgaacacaatgggataaactgtacagtatcctttgttttccaaacaatcgaccatacagcagtttttgccctgacagacatgttacatgcacattaccagcttgtatgtgttccacttcaacaaacaccgaagctaattatcaagacgccgttggcctgggcaacctcttcgcaatttcctgtacaaggaacatgatcaagttatgaggacgacgttcacaaagtttcttttcccagctatgtagtgtagcaaaagatttaaacataagaggataaaaacatcaataggaaaagaacatgaaggtgacagtgcatgtggacaatgtccaggaacctgactgatgaaaatgcaacgaagtgtttatccgtagggcgtaggctgtgtagagttgaactttgttgttaaaatgcccacattaggctgtccctatctgtggtgatccttaggcgagatcagagaaaatcactgattcttgtgctgagattgtttatccacacatatatgtgctagtgacttagtgagagtttaatatgaggttagagctgttcttccataccccaaacctcttctaactaactcaggaatctttctgtttttaattaataatgcaaaaacggtgacctgttaatggaaaaatatcataccataacgagttagtatgatgatgaccattgatggcctaacgcagtagctgtccattcaatgcttacacgtaagggggtgggtgaaacagttaggatttccatgaatttgaagctttggtgtttttgttcagcttgattaatttgaaataaaatagcatgttctcttgttagctatcctgcttcaaggacatcgtgaaagcaaatagcttcatatgctagggggcatacctcaaatacttggtttatattatcagctgtctttgctgatgtctcgatgaaaaccatattattcttctctgcatactcttgtgcttccttcagaatgtgcaccatatcgtcaaaacaattttgcagcatattgtgatactatgtttactacaacttcacacaagatctgacctgagaagatacatgtcgattttcatgtagatcagctttattaccaaccaaaaccatgataatatcaggactaccatgtttttgaagttcctgcaatataagaaaaaacaatctgaaagtgcttcatacctgaaaaaagaagtggaaacataacatacttcacaatagtcgacatggtacaatctcactgaatcaattgatattgatgaaataaatctagaaggtgcattttaagattaaatgcaagtgttcatattatatacacttctcacgctagtcagggtaatctttgagcataagcttcaacacatttataatattttagcagcaatcttacagtatgatataaaattttactagaacagtttcgggcaaaaaatacaaactcatagtaaaagatagaaagagtaatcaatcaaccagacatcagaaaagcagataatttggcaatagcataccttcacccagtattgtgctttgctaaatgattctggactagttatgtcgtagacaacaactgcagcagcagctcctctgtagtaaagaggtgccaaggcagcatacctaaaattggctggtaccaatgagttcttgattgagaaaaaccatatgcatgtgtggcacgtaagatggatcaattgtaaaaatcagtaacacatactactagaactttctcacaaaaccaatgcttctaatgcaccaacagcatgccattatcccaagattggaagaagctaaaaccatagtgctgtatgtgtacctctcttgtccagcggtatcccatatttcaaatttcactattgttgagtcctccaaagccaatgtttgtgataaaaatgatgcaccgacagttacctgaaattatttgaggaaataagtttaaaaaaatcgaacttctgaaagtaagaatcatgcatctaaggtgaagaataacattatcaactgaaactaagagactcaaaacagtaatcaccttggaagtgggatcaaactgaccacgaacaaagcgaagaacaatgcaacttttccctacaccagagtcaccaagcaataccaactacaacatcaaaaggatggacacgttaaagaaagctgctagtaacatgatatagaggcattattgtagtaataaagggcaaaatgtgcagtaaaccttagcacgcaagtcctttgaatcagtagcggagttatcgttgctaatattgttcaaccctccagtgcttcgagctggatgacaaaacagtgctatgtgttaacaaatggcggaaaatggctaattcttctactccagctacaaactttccccagcccccactcacatacatccacacacgatcctcccattcatagagatcgtgcagacaccctgctctaacctccaattaacccacaaattgacttaaattcactaaatcacagttcaaaaccgtccagattgcgcgaattttcgccccgatcaacgctgtgaccgaaaacatttatccccaatcagctttcagcataaaaaagctggtccctccctcccattttcccaagcagcaatacctgtaatcaaattattgaaaacccaatttgaaaacccccacggcaacacctgcttacctaacactcggtaccaacaatatccgcagccgaaacatagccaacgaggaaatctaatctaaaaaagggggatggaaacgtgtgagagagagaacctggcacggaggaggagcaacccatcgccggcgatgctagccggcgtcgaggtgaggcagagggacgcggaggcggcggtggtcggtggccggaggtgaggcgggcagatcgattgccgcgtcgccttctctctctctctctcccctactcgagtctgttgatccgcgcgattgtgttggttt
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| CDS seq | atgggttgctcctcctccgtgccagctcgaagcactggagggttgaacaatattagcaacgataactccgctactgattcaaaggacttgcgtgctaagttggtattgcttggtgactctggtgtagggaaaagttgcattgttcttcgctttgttcgtggtcagtttgatcccacttccaaggtaactgtcggtgcatcatttttatcacaaacattggctttggaggactcaacaatagtgaaatttgaaatatgggataccgctggacaagagaggtatgctgccttggcacctctttactacagaggagctgctgctgcagttgttgtctacgacataactagtccagaatcatttagcaaagcacaatactgggtgaaggaacttcaaaaacatggtagtcctgatattatcatggttttggttggtaataaagctgatctacatgaaaatcgacatgtatcttctcaggaagcacaagagtatgcagagaagaataatatggttttcatcgagacatcagcaaagacagctgataatataaaccaagtatttgaggaaattgcgaagaggttgcccaggccaacggcgtcttga
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| Protein seq | MGCSSSVPARSTGGLNNISNDNSATDSKDLRAKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIMVLVGNKADLHENRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLPRPTAS |
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| Function | Ras-related protein RABF1 [UniProtKB/Swiss-Prot:Q9CB01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0003990 | OsLaMu_03g0003990.01 | Chr03 | 2920496 | 2923577 | - | NAM | ||
| CDS seq | atgggttgctcctcctccgtgccagctcgaagcactggagggttgaacaatattagcaacgataactccgctactgattcaaaggacttgcgtgctaagttggtattgcttggtgactctggtgtagggaaaagttgcattgttcttcgctttgttcgtggtcagtttgatcccacttccaaggtaactgtcggtgcatcatttttatcacaaacattggctttggaggactcaacaatagtgaaatttgaaatatgggataccgctggacaagagaggtatgctgccttggcacctctttactacagaggagctgctgctgcagttgttgtctacgacataactagtccagaatcatttagcaaagcacaatactgggtgaaggaacttcaaaaacatggtagtcctgatattatcatggttttggttggtaataaagctgatctacatgaaaatcgacatgtatcttctcaggaagcacaagagtatgcagagaagaataatatggttttcatcgagacatcagcaaagacagctgataatataaaccaagtatttgaggaaattgcgaagaggttgcccaggccaacggcgtcttga
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| Protein seq | MGCSSSVPARSTGGLNNISNDNSATDSKDLRAKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIMVLVGNKADLHENRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLPRPTAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.390578 | 6.287384 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0151900 | RBH | 0.603109 | 1.337760 | 10.941813 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05740 | RBH | 0.376136 | 0.829784 | 2.597592 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0151900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004000 | RBH | 0.262881 | 20.360266 | 6.389191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003920 | RBH | 0.000000 | 3.219926 | 3.513309 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003960 | RBH | 1.999804 | 30.470852 | 11.025707 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003910 | RBH | 0.086986 | 0.195412 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004010 | RBH | 7.720153 | 16.209129 | 31.005123 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0046100 | SBH | 59.2694185 | 65.5318945 | 58.99107 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003900 | RBH | 0.560973 | 1.367025 | 2.338822 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0046500 | RBH | 15.938296 | 10.5135895 | 23.138932 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004010 | RBH | 0.213885 | 0.320430 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003980 | RBH | 1.429239 | 10.240259 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003950 | RBH | 2.230807 | 27.243071 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004010 | RBH | 0.597382 | 1.817599 | 2.506392 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012530 | RBH | 0.538157 | 4.171576 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003960 | RBH | 0.444146 | 5.728948 | 4.289387 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003820 | RBH | 2.096255 | 18.443285 | 14.797060 |
