Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0029670 | OGI:02081330 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:29700415-29706166 | ||||||||
| Gene Symbol | CDKF;4, CDKF;4, Orysa;CDKF;4 | ||||||||||
| DNA seq | aaaccgtggtggaggcaaaggcgccgcgggcttggcttggctggcaccctctcctcctcgtcttcggcttcgtcttcccccgtcaaacccacccacgccggccgccgacgccgccgccgttgcggcgggtgcttcccccgctcgcgtcggtgccggggggaagagggggagggggagggaaggcacgcggctgacctcgtgggggaggggagggggggaacggggcgacaccacccacccaccgccaccatatgctcgttgcccgcctggtaaggtatggtatctgtttcattccattgccccccatctttctcgtgcttgcgcccctgcccccgccgctgtactttcgcgtgccctggattagctggttggttcatctgcttgttgcggcgcgcggcggatctgtgcctccagccgccggatctgggtggttcgcgggcgttcggtgcaatgcgagtctgcgcgtaagtttttttttgtgtgttgtggtgaacagtggtgataattattgcagggtgttttttttatcttgtgggggtcgtgtccctgttgggacctcggatctgttcttgtttcgtggctaatttggattttatggcagaaggaagacgttttgtcacaatagattgagaacgctctctttttccttcccatggatggtcataatctgtgccttttggtgcttagcgttgtaatttgtgattagggtagcaatgcagattgtttcacatcatgttccaacccaaggcaatgcttctgagttacgaaatgtttgtaatatttatgaccttgctgtcttgccatgcttgatcgatcattgttgttaaattggatacccgcattacttccaattttttgcacttcttaggtagttaggggtataggatgatcattccatgtcgacgccttattgcaactgattgaatagtagcatcggtgtcaatattttgtcaatgcagcagcaacactctaccttatcaggcaatgttacctatagtgcatttttttttattctaggaggaagtgtatttgattgctgccaagaaggcagtgcttcattttgcacacatcagttttggtacttgcatcatgtggcctgtacatcattgttcgcaaagaagagaaaactgaagcgctataaatccttcaagcagttttttcggtctaaacccagccatatctgagtatgttagaatgattattatgtgcaaggtttctgtcggttttgattgtgatcctcagacataccttgtgacgcagatattcatgctgagttgattccttctagtcactttgcatgtacctatagtttgaacatgtgcacggaagtaatgatctttgactgtgttatatgtttctgacttaaatctgttatattagattggaccagctgtgatttggggagcttaaagtgttgatcagagacatggaaaaagtgatcttctgggcacatctccttaaatgcaagctttttctttcaaaagaaactcttgattggtgtgttttagctcgtgggaacacccaccacttctctctggtgaactacacatagtggttttatgctcctttatgctcaagaacatttggctgattcaatctttttcctgaagccatatttcaagtctgccaaacatctacatgtaatgcacctacttcatagcttgttcttccttcattttgtgtcatatggactaatttagctaaccaccatctttttattctactagcacgtcatctctaaagaagcttcctttaagttgtagatgctgatcatataagctgggtatgcctctttttactgttcattgatgcatttattggcatttagagaaataaattcttgcaacttgaaatattctaaacaacttactccttcccttattttgtagggttaatacctttgctcatttgtttgtcatctgttgctccctagttaattaccactagtgttgcattgaggtcagggttcatccttgctatagtatgcaactatatactatggttgctgcttgatcttctgagtgaaccaagatccaagaaaacataaggtgctggggctactgttcaattgactggttgcatatatttgttcgtgctaatcgatagactagtcaattggaagtggtggcaaacacctgtctttgtgacttggctgtccaacaggaaaaggctagcacaaggctgacattgaccggcataatggacaggtaactttcatattgacttactatttttaggtcacctttttcttatcaagtatgttgtctttgcagattcaaaatgattaaggaagttggtgacgggactttcgggagtgtatggcgtgctataaataaacaaaatggtgaagttgtatgtatctgaagataaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgattgtaagcaaaatgtgcactgatctataggtggcagttaagaaaatgaagaggaaatattattcttttgaggaatgcatgagtctacgtgaagtaaaggtattttaactgaaagatgtaccctctttcctgctatgaaccttcaactgatatttctcctatattgaagtctttgcggcgcatgaatcaccctaacatcgtgaagctcaaggaggttataagggaaaatgacatattatacttcataatggaatacatggtacttaaggatgtcatataccgcaaaagtttaattagctctgtatcgcttttgttaagtctcccatgttcttccaggagtgcaatctctaccaacttatgaaggatagagtcaagcctttctcagaggcagaagtccggaattggtgctttcagatttttcaggctcttgcatacatgcaccagaggggttactttcatcgtgacctgaaacctggtaggttctcttgtttagtcaacatcttcacctatatttctgtggcaatcaaattatgaaactacggatgagtatcagatgtaggtatgcagaatcagggtattattgtattgagaatatgagacatttagcctttatttttaccacatctactttgcaaactgaccgagatatactttctaataaatatatactttcatgtgggattgtattgtgcttatagctatggcactaatcactgtactaatgcagagaatctgttggttagcaaagatgtcataaagctggcggactttggtcttgcaagggaagttacatccgtgccaccatacacagaatatgtgtcaactcgctggttagtagcactctactcgcacacgtggacacaaatcccttttctttgttaatgttgatccacatgtgtttgaacatctcaggtaccgagcacctgaagtattgctccagtcatctatctatgattctgcagttggtaaagtttctactatctactttgtattttggcacatatagtacatactaagtcatgattggatgatcccctttttgccaacttgcagatatgtgggctatgggtgccataatggccgagctgttgacacttcatcctctttttcctggcacaaggtataatatgcatatatcatatgtatatgcattgttgttatgatttgtagtcacgtatctctctgtgtttgccatgtattttgggcatctgttattctgtctctcttattatatttcttctttgtggtggtcatatttgctcattgctgttctctttatccaactgtttagtgaggctgatgagattctgaagatttgcaatgttatcggtagcccagatgaacaatcatggccacaaggattgtctcttgcagagaccatgaagtttcagttccctcaggtcagtattcatcttccccttttccctttgcctatatatgttttcttttgggggtaagctctttgttgtgattatacttgtttctgaatgtgtcatgaatctttgatatgtgttgagcccattctgcaactgtttattttaatcccttggtcattctctgatgaattttgtccttgtgcctccctatctctctagacaatggtggaattatatcacttcgcatgccttacaatctttcatctccattagtccattgcctccttttcctcgcatattatcataggtttaaaagcgtagtgtcttgttctaacttgattcatgagtttgacatagattgtccataaatagtggcttaacacttaactaatctcatgtggatcttatcaatgcaggtcagtggcaatcaactggcagaggtaatgacatcagtcagtagtgaggcagtcgacctgatttcagtaagttctacaattctgttgccccagatggcgtacttaaaatctttagattattttattatatttgtttctttctacatctgcagtcactgtgctcatgggaccctttcaagagaccaaaggctgcagaagttctccagcatactttctttcaggtaaaattactattcgaactccgttgctgttgtctgtacctctgttgcagaagataaatcaaatttatttttgccatccactagggctgtacatttgttccacctactgtccggtcaaaagctggagtgctccctaaaacgcctccatgtggttagtttccacactgttttgcctcacaaccttggtgttcctggtactcttgttatatctatgatctatttgtttcagttggagtaaaaggagtttcggagcacggcatgcctcgaagatactctacaggaactctatcaacaaccaaacctcatagtaatgcatctctgaaatcaagtggcttatctaagaccggtaatatgtttaatcttttttctcaattgcttgttagcttgcattgtaggctatatttttatttctctttccaccttccaggtgtacaaagaaaacttcaaatggatcgtcaggcgccacagaagattaaaaaacctactgagagtaataataaactaaccactaatcgagtacctgcaaggaatagcccaggcaagtttccatagttgctttatttgaattctacatcaatttgtggttgactttgaagatttacattccctttgtggcaattataggtcaccctgtattaaggcattcacgcagtttacctgaaactggccgggcaacaatgcacaaggtttcaacccttaccgagagattatctcatatgtctgttacctctcgaacgcgtactactcccaagcctgctgccccgttactgaaggctgggctcggcaagtctgacttactgggaaaaacagacgaaatacctcctgcaaagaggttgacaagaaaattagtaagctaacgtagcagcatccatacagtggaagctggttagctggtgcagaggtgttataagctacagagcaaaatcccggtctgctgaaaatgatggcactgccggagtgtttgccaaatttgctgcatccaagtgccatagtagaataagtcgagcctgccgatccacgtggatctgcttttgccccaagtttgttccatgtttgaatagaacatgagtgtgctatatcgatttgaattgttgtcgaccagtgttcactcgcatatgcggtctgacaaatgatagacccgcgagcaggaggatgtttggcttttgcttgtacagtttatgagcttttgggtggcggtcaagtctttgtcgggtccttggcaaatgatacaatgcatagtctggttttgacttcgtctgtggctctattcaggtctttgtttgaagatgatgtctcatttctcatg
More
|
||||||||||
| CDS seq | atgaagaggaaatattattcttttgaggaatgcatgagtctacgtgaagtaaagtctttgcggcgcatgaatcaccctaacatcgtgaagctcaaggaggttataagggaaaatgacatattatacttcataatggaatacatggagtgcaatctctaccaacttatgaaggatagagtcaagcctttctcagaggcagaagtccggaattggtgctttcagatttttcaggctcttgcatacatgcaccagaggggttactttcatcgtgacctgaaacctgagaatctgttggttagcaaagatgtcataaagctggcggactttggtcttgcaagggaagttacatccgtgccaccatacacagaatatgtgtcaactcgctggtaccgagcacctgaagtattgctccagtcatctatctatgattctgcagttgatatgtgggctatgggtgccataatggccgagctgttgacacttcatcctctttttcctggcacaagtgaggctgatgagattctgaagatttgcaatgttatcggtagcccagatgaacaatcatggccacaaggattgtctcttgcagagaccatgaagtttcagttccctcaggtcagtggcaatcaactggcagaggtaatgacatcagtcagtagtgaggcagtcgacctgatttcatcactgtgctcatgggaccctttcaagagaccaaaggctgcagaagttctccagcatactttctttcagggctgtacatttgttccacctactgtccggtcaaaagctggagtgctccctaaaacgcctccatgtgttggagtaaaaggagtttcggagcacggcatgcctcgaagatactctacaggaactctatcaacaaccaaacctcatagtaatgcatctctgaaatcaagtggcttatctaagaccggtgtacaaagaaaacttcaaatggatcgtcaggcgccacagaagattaaaaaacctactgagagtaataataaactaaccactaatcgagtacctgcaaggaatagcccaggtcaccctgtattaaggcattcacgcagtttacctgaaactggccgggcaacaatgcacaaggtttcaacccttaccgagagattatctcatatgtctgttacctctcgaacgcgtactactcccaagcctgctgccccgttactgaaggctgggctcggcaagtctgacttactgggaaaaacagacgaaatacctcctgcaaagaggttgacaagaaaattagtaagctaa
More
|
||||||||||
| Protein seq | MKRKYYSFEECMSLREVKSLRRMNHPNIVKLKEVIRENDILYFIMEYMECNLYQLMKDRVKPFSEAEVRNWCFQIFQALAYMHQRGYFHRDLKPENLLVSKDVIKLADFGLAREVTSVPPYTEYVSTRWYRAPEVLLQSSIYDSAVDMWAMGAIMAELLTLHPLFPGTSEADEILKICNVIGSPDEQSWPQGLSLAETMKFQFPQVSGNQLAEVMTSVSSEAVDLISSLCSWDPFKRPKAAEVLQHTFFQGCTFVPPTVRSKAGVLPKTPPCVGVKGVSEHGMPRRYSTGTLSTTKPHSNASLKSSGLSKTGVQRKLQMDRQAPQKIKKPTESNNKLTTNRVPARNSPGHPVLRHSRSLPETGRATMHKVSTLTERLSHMSVTSRTRTTPKPAAPLLKAGLGKSDLLGKTDEIPPAKRLTRKLVS |
||||||||||
| Function | Cyclin-dependent kinase F-4 [UniProtKB/Swiss-Prot:Q6Z8C8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0029670 | OsLaMu_02g0029670.02 | Chr02 | 29702767 | 29706166 | + | NAM | ||
| CDS seq | atgaagaggaaatattattcttttgaggaatgcatgagtctacgtgaagtaaagtctttgcggcgcatgaatcaccctaacatcgtgaagctcaaggaggttataagggaaaatgacatattatacttcataatggaatacatggagtgcaatctctaccaacttatgaaggatagagtcaagcctttctcagaggcagaagtccggaattggtgctttcagatttttcaggctcttgcatacatgcaccagaggggttactttcatcgtgacctgaaacctgagaatctgttggttagcaaagatgtcataaagctggcggactttggtcttgcaagggaagttacatccgtgccaccatacacagaatatgtgtcaactcgctggtaccgagcacctgaagtattgctccagtcatctatctatgattctgcagttgatatgtgggctatgggtgccataatggccgagctgttgacacttcatcctctttttcctggcacaagtgaggctgatgagattctgaagatttgcaatgttatcggtagcccagatgaacaatcatggccacaaggattgtctcttgcagagaccatgaagtttcagttccctcaggtcagtggcaatcaactggcagaggtaatgacatcagtcagtagtgaggcagtcgacctgatttcatcactgtgctcatgggaccctttcaagagaccaaaggctgcagaagttctccagcatactttctttcagggctgtacatttgttccacctactgtccggtcaaaagctggagtgctccctaaaacgcctccatgtgttggagtaaaaggagtttcggagcacggcatgcctcgaagatactctacaggaactctatcaacaaccaaacctcatagtaatgcatctctgaaatcaagtggcttatctaagaccggtgtacaaagaaaacttcaaatggatcgtcaggcgccacagaagattaaaaaacctactgagagtaataataaactaaccactaatcgagtacctgcaaggaatagcccaggtcaccctgtattaaggcattcacgcagtttacctgaaactggccgggcaacaatgcacaaggtttcaacccttaccgagagattatctcatatgtctgttacctctcgaacgcgtactactcccaagcctgctgccccgttactgaaggctgggctcggcaagtctgacttactgggaaaaacagacgaaatacctcctgcaaagaggttgacaagaaaattagtaagctaa
More
|
|||||||
| Protein seq | MKRKYYSFEECMSLREVKSLRRMNHPNIVKLKEVIRENDILYFIMEYMECNLYQLMKDRVKPFSEAEVRNWCFQIFQALAYMHQRGYFHRDLKPENLLVSKDVIKLADFGLAREVTSVPPYTEYVSTRWYRAPEVLLQSSIYDSAVDMWAMGAIMAELLTLHPLFPGTSEADEILKICNVIGSPDEQSWPQGLSLAETMKFQFPQVSGNQLAEVMTSVSSEAVDLISSLCSWDPFKRPKAAEVLQHTFFQGCTFVPPTVRSKAGVLPKTPPCVGVKGVSEHGMPRRYSTGTLSTTKPHSNASLKSSGLSKTGVQRKLQMDRQAPQKIKKPTESNNKLTTNRVPARNSPGHPVLRHSRSLPETGRATMHKVSTLTERLSHMSVTSRTRTTPKPAAPLLKAGLGKSDLLGKTDEIPPAKRLTRKLVS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0029670 | OsLaMu_02g0029670.01 | Chr02 | 29700415 | 29706144 | + | NAM | ||
| CDS seq | atggacagattcaaaatgattaaggaagttggtgacgggactttcgggagtgtatggcgtgctataaataaacaaaatggtgaagttgtggcagttaagaaaatgaagaggaaatattattcttttgaggaatgcatgagtctacgtgaagtaaagtctttgcggcgcatgaatcaccctaacatcgtgaagctcaaggaggttataagggaaaatgacatattatacttcataatggaatacatggagtgcaatctctaccaacttatgaaggatagagtcaagcctttctcagaggcagaagtccggaattggtgctttcagatttttcaggctcttgcatacatgcaccagaggggttactttcatcgtgacctgaaacctgagaatctgttggttagcaaagatgtcataaagctggcggactttggtcttgcaagggaagttacatccgtgccaccatacacagaatatgtgtcaactcgctggtaccgagcacctgaagtattgctccagtcatctatctatgattctgcagttgatatgtgggctatgggtgccataatggccgagctgttgacacttcatcctctttttcctggcacaagtgaggctgatgagattctgaagatttgcaatgttatcggtagcccagatgaacaatcatggccacaaggattgtctcttgcagagaccatgaagtttcagttccctcaggtcagtggcaatcaactggcagaggtaatgacatcagtcagtagtgaggcagtcgacctgatttcatcactgtgctcatgggaccctttcaagagaccaaaggctgcagaagttctccagcatactttctttcagggctgtacatttgttccacctactgtccggtcaaaagctggagtgctccctaaaacgcctccatgtgttggagtaaaaggagtttcggagcacggcatgcctcgaagatactctacaggaactctatcaacaaccaaacctcatagtaatgcatctctgaaatcaagtggcttatctaagaccggtcaccctgtattaaggcattcacgcagtttacctgaaactggccgggcaacaatgcacaaggtttcaacccttaccgagagattatctcatatgtctgttacctctcgaacgcgtactactcccaagcctgctgccccgttactgaaggctgggctcggcaagtctgacttactgggaaaaacagacgaaatacctcctgcaaagaggttgacaagaaaattagtctttgtttga
More
|
|||||||
| Protein seq | MDRFKMIKEVGDGTFGSVWRAINKQNGEVVAVKKMKRKYYSFEECMSLREVKSLRRMNHPNIVKLKEVIRENDILYFIMEYMECNLYQLMKDRVKPFSEAEVRNWCFQIFQALAYMHQRGYFHRDLKPENLLVSKDVIKLADFGLAREVTSVPPYTEYVSTRWYRAPEVLLQSSIYDSAVDMWAMGAIMAELLTLHPLFPGTSEADEILKICNVIGSPDEQSWPQGLSLAETMKFQFPQVSGNQLAEVMTSVSSEAVDLISSLCSWDPFKRPKAAEVLQHTFFQGCTFVPPTVRSKAGVLPKTPPCVGVKGVSEHGMPRRYSTGTLSTTKPHSNASLKSSGLSKTGHPVLRHSRSLPETGRATMHKVSTLTERLSHMSVTSRTRTTPKPAAPLLKAGLGKSDLLGKTDEIPPAKRLTRKLVFV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0029670 | OsLaMu_02g0029670.03 | Chr02 | 29706009 | 29706143 | + | IsoSeq | ||
| CDS seq | gaggatgtttggcttttgcttgtacagtttatgagcttttgggtggcggtcaagtctttgtcgggtccttggcaaatgatacaatgcatagtctgg |
|||||||
| Protein seq | EDVWLLLVQFMSFWVAVKSLSGPWQMIQCIVW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 29705206 | 29705485 | + | OsLaMu_02g0029670.02 | OsLaMu_02g0029670.01,OsLaMu_02g0029670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.158756 | 37.534065 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0700600 | RBH | 2.051837 | 3.009068 | 26.007885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47220 | RBH | 1.025902 | 1.121897 | 6.035221 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0700600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030240 | RBH | 0.384334 | 94.858284 | 37.680092 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030330 | RBH | 0.471104 | 13.926110 | 22.739553 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030190 | RBH | 0.842514 | 71.670586 | 80.974892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029780 | RBH | 0.025781 | 1.978131 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030000 | RBH | 2.644928 | 80.128044 | 73.014198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0469300 | RBH | 19.5742855 | 42.136076 | 67.8799475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029770 | RBH | 0.238268 | 3.808028 | 19.830395 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0496400 | RBH | 24.7043145 | 16.1566445 | 95.9260255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030090 | RBH | 0.124778 | 0.687250 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029820 | RBH | 0.437247 | 41.506050 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030150 | RBH | 0.848383 | 78.474091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030000 | RBH | 0.556496 | 4.896557 | 7.662339 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018110 | SBH | 0.940894 | 10.250463 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030240 | RBH | 0.546507 | 24.224600 | 15.405527 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030020 | RBH | 0.537813 | 70.923141 | 50.471336 |
