Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_02g0017840 OGI:02052020 | 11/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr02:18619925-18625267
Gene Symbol -
DNA seq

atggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatcgaggactgcatcgacgacttcatgctccgcgtcgacaagctcggccacactacggcgagccccgtcgccgacgacggcaagggtttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccggcaagatccgcgagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagaggtacagattcccagcgtcttcctcctcctcctcctcctccggcggtgctgtgcccatcgaccctcggctgcatgccttctatgccaaggaggatagcctggTtggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggcgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggccaagaacagtttgattgccggTtggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgcaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtactttttctttactttacatgactaaattttacctgttcttctgatctaccagcttcgtttattttgaTttttcttatactagaaaaaatacccgtgcgttgcaagaggtgaagtctattttaatcTtattattgttatatggtttagttaagatgaaatcactatgagagttcgcttggatatatataTttttagaaaatcatgagttgcagttaggagtccgatcgtctcaagttagcatgcgagtttttcaaatttcttatatgattccttccgtattaccaaaagtgaatgatcTtaaaaatcgactcaaatatagatatgtattttcaaaagcaaacaaacttaaaaactgactcatacacggatgacgtagagatatagattaaaacaaaaaataaaattaaaaccgattcaaacacggatgacgaaccgcagaaacatcttcaattttttataaccgattcagactcggatgacggaccgcggaaacatcttcaaTttttacaattagtagagatagtagatattaattgatgacctggaatctgtcacttcaatcagtttggtaactaacctatatgcttcaaaatatatgcctacactaatttattaTtattaattaaatcattggatctattgttataaatgTttttttagtaatattgtaattttaaggatatctaaatacaaatatacttattaaagtaatagaaaaaaacgaggtttcacattcattctcacagcctagaaattctcatattaatcgaaggaaaataaaaaaagagtttatatagaaatataattttaaaatagcttaaatttagaattaaaagtaaatattggatgaggagaatagagtccatactggtatacaatttagagttaattgaaattcaaaattaaaaaaataagaaaactaaaagtatagattagagtccatataaaaatacaatttagaaataaaaaagattcagaataaaaaaataatattggaagaagagttcaaagtccatatagtaatacaatttaaaataactaaaattcgaaattaaaaaacaaggagtattggaagagaagtatagagtccatataggaatacaatttaaaaataactgaaatttaggaacattggaataagggtttatagtccaatagaaataaaatttataaataacggaacttcataaattaaaaataaggaatattggaagaggatactAaagtgcatatatgaataaaatttagaaataacaactaaaattcgaaatAaaaaaggaatattggaaaaagagtttaaagtccatataggaatactatttagaaataactgaaattcggaattataaaacatggagtattagaaaagaagtctagagttcatgtaggaatataaTttaaaagtaactaaaatttgggaatattgaagaagggtttagagtccatataggaataaaattTAtaaataatggaacttcagaattaaaaataaagaatattggaagaggagactaaacatcatataagaacaaaattaagaaataactatcacgtatatacaatacaatatgaatgttacgcattggttaatttggttaagttcatacagaatttaaaactatattgctattttaatatattttaatactaaaatgtgactccatatatgttattatgtgagaagaaaaaataatgatgctagccgctctatctataggccactatacTtgtttatataaactaatgatcaaatcattctcaaaaacccgactattcaaaaagtttagtttaaaaaaatggagctattaacttgtgcgccatcaacgagtgaaggctgagtacaactaaatgatagaagaaatgaacaacggaatcatacaaattaaaTttatcagctcatttacgcttagccacctatttatacgtctgttcagtgaattttatatgtgaaagtttatttttcttttcttaaatataccccctccattccaaaatatagaaatctaggattggataggacactttttaagcttttgtcacgcctaaagaaacaaaattccgaaccacatactatcaccactagttcgtggcttgaaataaaaagaaaatcaaattcccaaaccatactatcactgttggtcgtggcttgaactagaagggacagtctctattagtgcctaatggataaccgcacgggtatcactgccagattaaccatagtaaatttctgtgtatgtaatttctttttggcattcatgaattttataaattaataattagaaaagttcatttggaaatgagtacatgtgcatgtacggaaatgtactattaatagttatttacatattattcggatttatgaacaacttttatatgagtactactgtactagttatgtaagtttaattatgtaatatccatcagtagcttgtgcaaatggatgggttatgatatagtagaatttagaaggagatatatgtgcacatgattaactaacatgatgtatttataaactatttttaggtacctcatcataattgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgattatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaaatgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccgtagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga

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CDS seq

atggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatcgaggactgcatcgacgacttcatgctccgcgtcgacaagctcggccacactacggcgagccccgtcgccgacgacggcaagggtttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccggcaagatccgcgagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagaggtacagattcccagcgtcttcctcctcctcctcctcctccggcggtgctgtgcccatcgaccctcggctgcatgccttctatgccaaggaggatagcctggTtggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggcgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggccaagaacagtttgattgccggTtggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgcaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtacctcatcataattgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgattatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaaatgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccgtagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga

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Protein seq

MEHAVVSAATGVLSPLVGRLSTLLEKEYAGLKGVRKEIVSLREEVSSMNATLLKLASEEDPDVQDREWGNQIRDLSYDIEDCIDDFMLRVDKLGHTTASPVADDGKGFFQRNLSKLRTLGARHDIAGKIRELKARVDVVSKRHERYRFPASSSSSSSSGGAVPIDPRLHAFYAKEDSLVGIEQPRDEVISLLTQGQGEEALAKKLKIVSIVGFGGLGKTTLASVVHRKLGQEQFDCRLVVSVSQSPDIMRIFHRILIEEFKVQPCIHNDLQGMINQLRNHLLHKRYLIIIDDLWDVSVWENALLCAFPDNNLGSRVIMTTRDNTVAEKCCGQQRDCIYEMKPLNETDSRKLFFKRIFGSEDDCPNELKDISDEILRKCGGLPLAIITVASLLASQAGKVKEEWEHVQNSLGSKLGTDPSLEMMRQILNLSYKYLHPDLKTCFLYLGAYPEDYVIWKDDLVRQWVAEGFVHGLESAGGYFNQLVNRSMIQPVKIGYDDEVLSCRVHDLMLELIIRKYSVEENFLTAVVGNSQEIKGTVHNVRRLFHYSDVLGRRRSAPALRIGLQKVRSIASCVTDIHQVRFQDMKFLRVLVLELVYNPKDESTTQAVVDLSVICKLLLLRYLKIQSEYLLKLPPQIRMLQHLETLEIASKFDKAGLAIPSDLAQLPRLSYLSILPYMAGGLPANVGTMTQLRSLAFLVLEENTLDSIKSLHHLTNLRELYIISASGDSSAGGDEDETAHVDALQSSLSGLADCKLYLTAWSTWLSRVPQWVGRLRNIYGLEIGVGELCKDGVSVLAGLPAMARLDLWIRSAPTESVVIAGDGFPVLKHLIFTCRALCLTFEAGAMPKLRRLDLEFNDDGGGDGGFGNALVGVEHLAGLRVLSAKIGGFRSAVDAAATTGEEQADDRSAAMSRLRDAIDLHPSRPRVDITYTQGRYGLS

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_02g0017840 OsLaMu_02g0017840.01 Chr02 18619925 18625267 + NAM
CDS seq

atggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatcgaggactgcatcgacgacttcatgctccgcgtcgacaagctcggccacactacggcgagccccgtcgccgacgacggcaagggtttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccggcaagatccgcgagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagaggtacagattcccagcgtcttcctcctcctcctcctcctccggcggtgctgtgcccatcgaccctcggctgcatgccttctatgccaaggaggatagcctggTtggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggcgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggccaagaacagtttgattgccggTtggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgcaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtacctcatcataattgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgattatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaaatgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccgtagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga

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Protein seq

MEHAVVSAATGVLSPLVGRLSTLLEKEYAGLKGVRKEIVSLREEVSSMNATLLKLASEEDPDVQDREWGNQIRDLSYDIEDCIDDFMLRVDKLGHTTASPVADDGKGFFQRNLSKLRTLGARHDIAGKIRELKARVDVVSKRHERYRFPASSSSSSSSGGAVPIDPRLHAFYAKEDSLVGIEQPRDEVISLLTQGQGEEALAKKLKIVSIVGFGGLGKTTLASVVHRKLGQEQFDCRLVVSVSQSPDIMRIFHRILIEEFKVQPCIHNDLQGMINQLRNHLLHKRYLIIIDDLWDVSVWENALLCAFPDNNLGSRVIMTTRDNTVAEKCCGQQRDCIYEMKPLNETDSRKLFFKRIFGSEDDCPNELKDISDEILRKCGGLPLAIITVASLLASQAGKVKEEWEHVQNSLGSKLGTDPSLEMMRQILNLSYKYLHPDLKTCFLYLGAYPEDYVIWKDDLVRQWVAEGFVHGLESAGGYFNQLVNRSMIQPVKIGYDDEVLSCRVHDLMLELIIRKYSVEENFLTAVVGNSQEIKGTVHNVRRLFHYSDVLGRRRSAPALRIGLQKVRSIASCVTDIHQVRFQDMKFLRVLVLELVYNPKDESTTQAVVDLSVICKLLLLRYLKIQSEYLLKLPPQIRMLQHLETLEIASKFDKAGLAIPSDLAQLPRLSYLSILPYMAGGLPANVGTMTQLRSLAFLVLEENTLDSIKSLHHLTNLRELYIISASGDSSAGGDEDETAHVDALQSSLSGLADCKLYLTAWSTWLSRVPQWVGRLRNIYGLEIGVGELCKDGVSVLAGLPAMARLDLWIRSAPTESVVIAGDGFPVLKHLIFTCRALCLTFEAGAMPKLRRLDLEFNDDGGGDGGFGNALVGVEHLAGLRVLSAKIGGFRSAVDAAATTGEEQADDRSAAMSRLRDAIDLHPSRPRVDITYTQGRYGLS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.982872 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0286850 SBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g35210 SBH 0.227498 0.177635 0.108021
Nipponbare | IRGSP 1.0 | RAP-db Os02g0286850 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0018190 RBH 0.202317 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0018340 RBH 0.103383 0.381755 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0018240 RBH 0.220667 0.0 0.470072
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0018010 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0018010 RBH 0.0 1.238587 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0297700 RBH 0.2944615 3.4444325 0.004027
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0011600 SBH 0.211715 3.246898 4.215747
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0315500 RBH 0.3226985 6.7203295 0.0104025
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0018230 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0017950 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0021440 SBH 0.000000 4.440400 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0018120 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0010590 SBH 0.042731 3.007900 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G021400 SBH 0.000000 0.469108 0.187154
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0011890 SBH 0.631141 7.849659 2.948246
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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