Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0018340 | OGI:02052020 | 11/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:17893023-17897899 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagagcatcaagcatggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatggaggactgcatcgacgacttcatgctccgcgtcgacaagcacggccacactacggcgaaccccgacgacgacaagggcttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccgggaagatccgggagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagagatacagattcccagcgtcttcctcctcctccggcggtgctgtgcccatcgaccctcggcttcatgccttctatgccaaggaggatagcctggttggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggtgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggcgaagaacagtttgattgccggttggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgaaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtactttttctttactttacatgactaaattttacctgttcttctgatctaccttcgtttattttgatttttcttatatattaattgatggcctggaatccgtaacttcaatcagtttggtaactaacctatatgcttcaaaaataattgcctacattaatttattattattaattaaatcattggatctgttgttataaatgtttttttagtaatattgtaattttaaggatatcttaatagtacaaatatacttattaaagtaatagAaaaaaaagggtttcacattcgctctcacagcctagaaattctcatattaatcgaaggaaaaaaatagagttcatatagaaatataattttaaaatagcttaaattcggaattaaaagtaaatattggatgaggagaatagagtccatattggtatacaatttagagttaattgaaattcagaatTaaaaaaaaTaagaaaattataagtatagattagagtctatataaaaatacaatttagaaataactaagattcggaataaaaaaataatattggaagaagagttcagagtccatgtagtaatacaatttaaaataactgaaatttagaattaaaaacatggagtattgaaagacaagtatagagtccatataggaatacagtttaaaaataactgaaatttaggaacattgaaataagggtttatagtccctataggaataaaatttataaataacagaacttcggaaattaaaaataaggaatattggaagagaatactaaagtgcatatatgaatacaatttagaaataacaactaaaattcgaaataaaaaaagaatattggaagaagagtataaaatccatataggaatactatttagaaataactgaaattcggaattataaaacatggagtattataaaagaagtctagagtccatataggaatacaattttaaagtaactaaaattcgggaatattgaagaagggtttagagtccatataggaataaaatttattaataatggaatatcagaattaaaaataaagaatattggaagatgagactaaacatcatatacgaataaaattaagaaataactatcacgtatatacaatacaatatgaatgctacgcattggttaatttggttaagttcatacataatttaaaactatgttgtcattttaatatattttaatactaaaatgtgactccatatatggtattatgtgagaagaaaatataatgatgctagcccacgcaaccactatactagtttatataaactaatgatcaaatcattctcaaaaaCccaactattcaaaaagtttagtttaaaaaaatggagctattaacttgtgcgccatcaacgagtgaaggctgagtacaactaaatgatagaagaaatgaacaacagaatcattcaaattaaatttatcagctcatttacgcttagccacccatttatacgtgtgttcagtgaattttatatgtgaaagattatttatcttttcttaaatataccccctccattccaaaatatagaaatctaggattggataggacactttttaagcttttgtcacgcctaaaaaaacaaatatccgaaccacatactatcactactaattcgcggcttgaaataaaaagaaaatcaaattCccaaaccatactatcactgttggtcgtggcttgaactagaagggacagtctctattagtgccaaatggataaccgcacgggtatcactgccagattaaccatagtaaatttctgtgtatgtaatttctttctggcattcatgaattttataaattaataattagaaaagtatatatgcatgtatggaaatgtactattcatagttatttacatattattcggatttatgaacaacttttatatgagtactactgtactacggagtaagttatgtaaatttaattatgtaatatctatcagtagcttgtgcgaatggatgggttatgatatagtagcatttataaggagatatatgtgcacatgattaactaacatgatgtatttataacctatttttaggtacctcatcatagttgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgatcatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaagtgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccatagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga
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| CDS seq | atgagagcatcaagcatggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatggaggactgcatcgacgacttcatgctccgcgtcgacaagcacggccacactacggcgaaccccgacgacgacaagggcttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccgggaagatccgggagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagagatacagattcccagcgtcttcctcctcctccggcggtgctgtgcccatcgaccctcggcttcatgccttctatgccaaggaggatagcctggttggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggtgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggcgaagaacagtttgattgccggttggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgaaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtacctcatcatagttgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgatcatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaagtgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccatagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga
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| Protein seq | MRASSMEHAVVSAATGVLSPLVGRLSTLLEKEYAGLKGVRKEIVSLREEVSSMNATLLKLASEEDPDVQDREWGNQIRDLSYDMEDCIDDFMLRVDKHGHTTANPDDDKGFFQRNLSKLRTLGARHDIAGKIRELKARVDVVSKRHERYRFPASSSSSGGAVPIDPRLHAFYAKEDSLVGIEQPRDEVISLLTQGQGEEALVKKLKIVSIVGFGGLGKTTLASVVHRKLGEEQFDCRLVVSVSQSPDIMRIFHRILIEEFKVKPCIHNDLQGMINQLRNHLLHKRYLIIVDDLWDVSVWENALLCAFPDNNLGSRVIMTTRDNTVAEKCCGQQRDCIYEMKPLSETDSRKLFFKRIFGSEDDCPNELKDISDEILRKCGGLPLAIITIASLLASQAGKVKEEWEHVQNSLGSKLGTDPSLEMMRQILNLSYKYLHPDLKTCFLYLGAYPEDYVIWKDDLVRQWVAEGFVHGLESAGGYFNQLVNRSMIQPVKIGYDDEVLSCRVHDLMLELIIRKYSVEENFLTAVVGNSQEIKGTVHNVRRLFHYSDVLGRRRSAPALRIGLQKVRSIASCVTDIHQVRFQDMKFLRVLVLELVYNPKDESTTQAVVDLSVICKLLLLRYLKIQSEYLLKLPPQIRMLQHLETLEIASKFDKAGLAIPSDLAQLPRLSYLSILPYMAGGLPANVGTMTQLRSLAFLVLEENTLDSIKSLHHLTNLRELYIISASGDSSAGGDEDETAHVDALQSSLSGLADCKLYLTAWSTWLSRVPQWVGRLRNIYGLEIGVGELCKDGVSVLAGLPAMARLDLWIRSAPTESVVIAGDGFPVLKHLIFTCRALCLTFEAGAMPKLRRLDLEFNDDGGGDGGFGNALVGVEHLAGLRVLSAKIGGFRSAVDAAATTGEEQADDRSAAMSRLRDAIDLHPSRPRVDITYTQGRYGLS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0018340 | OsKeNa_02g0018340.01 | Chr02 | 17893023 | 17897899 | + | NAM | ||
| CDS seq | atgagagcatcaagcatggagcatgccgtagtgagcgcagccacaggagtgctgagcccgctcgtcggcaggctgtccaccctactcgagaaggagtacgccggcctcaagggcgtgcgcaaggagatcgtctccctgcgggaggaggtaagcagcatgaacgccacgctgctgaagctggcctccgaggaggaccccgacgtccaggacagggagtgggggaaccagatccgtgacctctcctacgacatggaggactgcatcgacgacttcatgctccgcgtcgacaagcacggccacactacggcgaaccccgacgacgacaagggcttcttccagcggaacctgtccaagctgaggacgctaggagctcgccacgacatcgccgggaagatccgggagctcaaggcccgcgtcgacgtcgtgagcaagcgccacgagagatacagattcccagcgtcttcctcctcctccggcggtgctgtgcccatcgaccctcggcttcatgccttctatgccaaggaggatagcctggttggcatcgaacagccacgggatgaggtcatcagcttgttgactcaaggtcaaggagaggaagcgttggtgaagaagctcaagattgtctccatagtaggattcggcggactaggcaagaccactcttgccagcgtggtgcaccgcaagttgggcgaagaacagtttgattgccggttggtggtatcagtatcacaaagccctgacatcatgaggatatttcacaggatactaatcgaagaatttaaggtgaaaccatgtatccacaacgatttgcaaggcatgattaaccagcttagaaaccatcttctacacaagaggtacctcatcatagttgatgatttgtgggatgtatcagtgtgggaaaatgctcttttatgtgctttcccggataataatcttgggagcagagtgatcatgactacacgggataacacggtggcagaaaaatgctgcgggcagcaacgcgactgcatttatgaaatgaaacctctaagtgagacagactcaagaaaactgtttttcaaaagaatatttggctctgaagacgactgcccgaatgagctgaaagatatttcagatgaaattttaaggaaatgtggcggtttgccccttgcgatcattaccatagctagccttttagctagccaagcaggcaaggtaaaggaagaatgggagcatgtacagaattctttgggctcaaagttggggacagatcccagtctagagatgatgcggcaaatactaaacctcagttacaagtatcttcatcctgatctcaagacctgcttcctgtaccttggcgcatatccagaggattatgtaatctggaaagatgatctggtcaggcaatgggtagccgaaggttttgtgcacggactggaaagtgcaggaggttatttcaaccagcttgtaaacagaagcatgattcagccggtgaaaattggctacgatgatgaggttctgtcctgcagggtgcatgacttgatgcttgagctcatcatacgcaagtactctgtggaggagaattttctgaccgcggtagtaggcaattcgcaagagatcaaaggaacggtgcacaatgtccgtcggctgttccactactccgatgttctcggaaggcgccgttccgcgccagcattgagaatcggtctgcaaaaggttcgatcgattgcgtcctgtgttaccgacatccatcaggtccggttccaggacatgaagtttctgcgagttcttgtccttgaactcgtttataaccctaaggatgagtcgacgacacaagcggtggtggacctcagtgtcatatgcaaactgttgttgctacggtatctcaagatccagagcgaatatctgcttaagctgcctcctcaaattcggatgttacagcatttggagacattggagatagccagcaagttcgacaaagcaggactcgccattccatcagatcttgctcagctgccccgcctctcctacctcagcattctgccatacatggcggggggcttgccagccaatgttggcaccatgacacagcttcgctccctggcattcttggttctggaggagaacactttggacagcatcaagagcctccatcatctgacaaatttaagagagctgtacatcatcagcgcctccggtgacagctccgccggcggcgacgaggatgaaacggcgcacgtggatgccttgcaatcttcactctctggcctggccgactgcaagctctacctcacagcctggtcgacctggctatcaagggtcccccagtgggttggccggctgaggaacatctacggcctggagatcggcgtcggcgagctctgcaaggacggcgtgtccgtcctcgcggggctgcccgccatggcccgcctcgacctgtggatccggagcgcgccaacggagagcgtcgtcatcgccggcgacgggttcccggtcctgaagcaccttatattcacctgcagggcgctgtgcctcaccttcgaggccggggcgatgcccaagctccgcaggcttgaccttgagttcaacgacgatggaggaggtgacggcgggttcggcaacgccctcgtcggcgtcgagcacttggcgggcctcagggttttgtctgccaaaattgggggcttcagatcagccgttgacgccgccgccaccaccggagaggagcaggccgacgacagaagcgccgccatgtcaaggttgcgggacgccatcgaccttcacccaagtcgcccccgcgttgacatcacatatacgcaggggaggtatggcctttcatga
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| Protein seq | MRASSMEHAVVSAATGVLSPLVGRLSTLLEKEYAGLKGVRKEIVSLREEVSSMNATLLKLASEEDPDVQDREWGNQIRDLSYDMEDCIDDFMLRVDKHGHTTANPDDDKGFFQRNLSKLRTLGARHDIAGKIRELKARVDVVSKRHERYRFPASSSSSGGAVPIDPRLHAFYAKEDSLVGIEQPRDEVISLLTQGQGEEALVKKLKIVSIVGFGGLGKTTLASVVHRKLGEEQFDCRLVVSVSQSPDIMRIFHRILIEEFKVKPCIHNDLQGMINQLRNHLLHKRYLIIVDDLWDVSVWENALLCAFPDNNLGSRVIMTTRDNTVAEKCCGQQRDCIYEMKPLSETDSRKLFFKRIFGSEDDCPNELKDISDEILRKCGGLPLAIITIASLLASQAGKVKEEWEHVQNSLGSKLGTDPSLEMMRQILNLSYKYLHPDLKTCFLYLGAYPEDYVIWKDDLVRQWVAEGFVHGLESAGGYFNQLVNRSMIQPVKIGYDDEVLSCRVHDLMLELIIRKYSVEENFLTAVVGNSQEIKGTVHNVRRLFHYSDVLGRRRSAPALRIGLQKVRSIASCVTDIHQVRFQDMKFLRVLVLELVYNPKDESTTQAVVDLSVICKLLLLRYLKIQSEYLLKLPPQIRMLQHLETLEIASKFDKAGLAIPSDLAQLPRLSYLSILPYMAGGLPANVGTMTQLRSLAFLVLEENTLDSIKSLHHLTNLRELYIISASGDSSAGGDEDETAHVDALQSSLSGLADCKLYLTAWSTWLSRVPQWVGRLRNIYGLEIGVGELCKDGVSVLAGLPAMARLDLWIRSAPTESVVIAGDGFPVLKHLIFTCRALCLTFEAGAMPKLRRLDLEFNDDGGGDGGFGNALVGVEHLAGLRVLSAKIGGFRSAVDAAATTGEEQADDRSAAMSRLRDAIDLHPSRPRVDITYTQGRYGLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.103383 | 0.381755 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0286850 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35210 | SBH | 0.227498 | 0.177635 | 0.108021 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0286850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018190 | RBH | 0.202317 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011070 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018240 | RBH | 0.220667 | 0.0 | 0.470072 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018010 | RBH | 0.0 | 1.238587 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0297700 | RBH | 0.2944615 | 3.4444325 | 0.004027 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011600 | SBH | 0.211715 | 3.246898 | 4.215747 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0315500 | RBH | 0.3226985 | 6.7203295 | 0.0104025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021440 | SBH | 0.000000 | 4.440400 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017840 | RBH | 0.0 | 0.982872 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021400 | SBH | 0.000000 | 0.469108 | 0.187154 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011890 | SBH | 0.631141 | 7.849659 | 2.948246 |
