Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0003720 | OGI:02008870 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:2606269-2609158 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcacctgccgctgccgctgaagcgaatcgccgccgccgtcctcgaatcgtcgacccggttcgtcttcctCCccgcgcgcgcgatccatctattacagcctcgaggtgagataaaattccgtttgtcctcctgttctaaggttgcatgcgcgttctcattggctccaatggggattttcttttcttcagtaaatttcttgatgtttgggggcggcctgggcctgcgcgtgctccgatggggattttttttaggtaaacatgctgatgttcgcgtatactaggttTGtgtgttaccctagcgcgtggtggttggttgcttgcaacgcgattgattaggttttgcgtaattggttcgatcggatgggttGtggggttgggcgaccagaagatttatgagtagtagcgtcagatcagttttagacaattaattggttgcatcttttctcttgatagtccgcctgttctacacttgtgctacctgtaggtagagattgttaatttctcatatatagcaccatgtgctgatcctTAAttttgttggtaatttgtatatgtaaaattgttaaatttttcaaactcttttctgctcgctccaggctgttgataaatctcctggctatttacttgagtgttgctgcctataccaaagagcagtccattagcgcgtgattaattaagtattaacTttttttaaaaaaatagattaattatattttttaagcaactttcatatataaactttttgcaaaaaacactccgttttgcaatttgaaaagcgtgcgcgcggaaaacgagagaggttagggagaggcacaaacgaacacagattgtgaactcaggcactttggggttgataactttgtactgtagcagtacaatgttttgtctattaagaactaaaggatgggcccataactaagatgggagggtgtatagagttatctgtatattattggttaaattagcatgtaacgttctacatattggtttagtatatgtaaaaccttttgctctgcttcagcttatttgtgctctgcttattgatatctttatgttaacacacagatatatccatcttgcgctgccattgcttccaatcagagaccggattgatcaatgaacaatatggaggcggcactacctgaggacttgctggccaacgtccttggccgcctcccaccgtgcagcctcgccgtgtcacgctgtgtccgcaaggactggcgtgccctcatcgacaaccgacgcctccttcgtgctgacctcctccctctccgcctcgacgctttcttcttcaagggccagatcctcacgtctcacccctacttcttctcgtcacgctctacggcacgccggatcggtggccgcctcgacttcctcgacaccttcaatgacgaagatctacagatcatggatcactgcaatggcctgctcctgttcttcgagcggctcgccaaccctgccactcgccaatggatgcacctgcctaccttcccgatgtcgccatgtgtcacgctgggcttgcgcacgggcttctgcctcgtgtatgatcccatggtatcgccgcaccactttgaggtgttttgtgtccctttggttcccgaaaacatcttctatagaagcagcgataatttggaccccaacagcaacagcagcgttgatcaggagtcattagaatggccgttgtcatcgcggtgcacaacaCacgtcttctcgtcgaggaaatggaggtgggaggagaggtcatttgtccgccaacaaggagtggagcctgccaatgagaccattgccgacctacaatttcatccccagcaattccaacgccgtgccttatatttgaagggagaaatttatgtgcaatgcaagaacaattctcttatgaggtaagtgaataaatctgtgagcTtttttaatggtactagtaaaaacacttagaacttcaatgatagaagggtttgtgaacataataaatgttaaaaaaaatcatttaggacaaaatatagttggttcatgaaacaaactgatgttgctggtgggtcctgtaattatggacaccttcacagcttgctacctagcacagagagccagtctccaagccagaaatataaaactgAAaaagaaatactcgctccttgtatgcatgattttactaacatgctttcttgttaatggctcaacctcaatttgcagaataaccctgtcaaatgataagtaccaaatgatcaaatcgccagtagagagcAaaattgatgatggcaacggcgtccttcagttgggaaaatcagagaaaggagtctactttgtgttgcttatgaaggataataatttcccccaatttcaagtttggttgctcaataaatcttcatcatgtggtggtcaggttgagtgggcgttgaaggctaacatcagccttgaagcaattatggataattttcctcttaacactgacaatagtttcagcagaccatggatcctaaactatgtgaccgaagaagcaatacgaagggcacaggaggaggaggaggaacttgaatgggactttgaaaatggtatcatccttgaaaccaaagataaggcggaagcacaccatcttaataaTatttattttatagggtttcatccttacaaagagattgccttcttttgggtctcatcatcaagagtgatatcctatcatttgaatacctcaaaggttcaagagttgggcatcttattccatttacccggtatagcgcagtcatttctatacacaccgtgctggatggaactatttgaaaataacaattagctactagctagtagttactttatcAaagttagcacgtattcatacacacatttaaataaatatgttcccttttaatatatatAtgtatgaacgattgtttaattt
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| CDS seq | atgaacaatatggaggcggcactacctgaggacttgctggccaacgtccttggccgcctcccaccgtgcagcctcgccgtgtcacgctgtgtccgcaaggactggcgtgccctcatcgacaaccgacgcctccttcgtgctgacctcctccctctccgcctcgacgctttcttcttcaagggccagatcctcacgtctcacccctacttcttctcgtcacgctctacggcacgccggatcggtggccgcctcgacttcctcgacaccttcaatgacgaagatctacagatcatggatcactgcaatggcctgctcctgttcttcgagcggctcgccaaccctgccactcgccaatggatgcacctgcctaccttcccgatgtcgccatgtgtcacgctgggcttgcgcacgggcttctgcctcgtgtatgatcccatggtatcgccgcaccactttgaggtgttttgtgtccctttggttcccgaaaacatcttctatagaagcagcgataatttggaccccaacagcaacagcagcgttgatcaggagtcattagaatggccgttgtcatcgcggtgcacaacaCacgtcttctcgtcgaggaaatggaggtgggaggagaggtcatttgtccgccaacaaggagtggagcctgccaatgagaccattgccgacctacaatttcatccccagcaattccaacgccgtgccttatatttgaagggagaaatttatgtgcaatgcaagaacaattctcttatgagaataaccctgtcaaatgataagtaccaaatgatcaaatcgccagtagagagcAaaattgatgatggcaacggcgtccttcagttgggaaaatcagagaaaggagtctactttgtgttgcttatgaaggataataatttcccccaatttcaagtttggttgctcaataaatcttcatcatgtggtggtcaggttgagtgggcgttgaaggctaacatcagccttgaagcaattatggataattttcctcttaacactgacaatagtttcagcagaccatggatcctaaactatgtgaccgaagaagcaatacgaagggcacaggaggaggaggaggaacttgaatgggactttgaaaatggtatcatccttgaaaccaaagataaggcggaagcacaccatcttaataaTatttattttatagggtttcatccttacaaagagattgccttcttttgggtctcatcatcaagagtgatatcctatcatttgaatacctcaaaggttcaagagttgggcatcttattccatttacccggtatagcgcagtcatttctatacacaccgtgctggatggaactatttgaaaataacaattag
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| Protein seq | MNNMEAALPEDLLANVLGRLPPCSLAVSRCVRKDWRALIDNRRLLRADLLPLRLDAFFFKGQILTSHPYFFSSRSTARRIGGRLDFLDTFNDEDLQIMDHCNGLLLFFERLANPATRQWMHLPTFPMSPCVTLGLRTGFCLVYDPMVSPHHFEVFCVPLVPENIFYRSSDNLDPNSNSSVDQESLEWPLSSRCTTHVFSSRKWRWEERSFVRQQGVEPANETIADLQFHPQQFQRRALYLKGEIYVQCKNNSLMRITLSNDKYQMIKSPVESKIDDGNGVLQLGKSEKGVYFVLLMKDNNFPQFQVWLLNKSSSCGGQVEWALKANISLEAIMDNFPLNTDNSFSRPWILNYVTEEAIRRAQEEEEELEWDFENGIILETKDKAEAHHLNNIYFIGFHPYKEIAFFWVSSSRVISYHLNTSKVQELGILFHLPGIAQSFLYTPCWMELFENNN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0003720 | OsLaMu_02g0003720.01 | Chr02 | 2606269 | 2609158 | + | NAM | ||
| CDS seq | atgaacaatatggaggcggcactacctgaggacttgctggccaacgtccttggccgcctcccaccgtgcagcctcgccgtgtcacgctgtgtccgcaaggactggcgtgccctcatcgacaaccgacgcctccttcgtgctgacctcctccctctccgcctcgacgctttcttcttcaagggccagatcctcacgtctcacccctacttcttctcgtcacgctctacggcacgccggatcggtggccgcctcgacttcctcgacaccttcaatgacgaagatctacagatcatggatcactgcaatggcctgctcctgttcttcgagcggctcgccaaccctgccactcgccaatggatgcacctgcctaccttcccgatgtcgccatgtgtcacgctgggcttgcgcacgggcttctgcctcgtgtatgatcccatggtatcgccgcaccactttgaggtgttttgtgtccctttggttcccgaaaacatcttctatagaagcagcgataatttggaccccaacagcaacagcagcgttgatcaggagtcattagaatggccgttgtcatcgcggtgcacaacaCacgtcttctcgtcgaggaaatggaggtgggaggagaggtcatttgtccgccaacaaggagtggagcctgccaatgagaccattgccgacctacaatttcatccccagcaattccaacgccgtgccttatatttgaagggagaaatttatgtgcaatgcaagaacaattctcttatgagaataaccctgtcaaatgataagtaccaaatgatcaaatcgccagtagagagcAaaattgatgatggcaacggcgtccttcagttgggaaaatcagagaaaggagtctactttgtgttgcttatgaaggataataatttcccccaatttcaagtttggttgctcaataaatcttcatcatgtggtggtcaggttgagtgggcgttgaaggctaacatcagccttgaagcaattatggataattttcctcttaacactgacaatagtttcagcagaccatggatcctaaactatgtgaccgaagaagcaatacgaagggcacaggaggaggaggaggaacttgaatgggactttgaaaatggtatcatccttgaaaccaaagataaggcggaagcacaccatcttaataaTatttattttatagggtttcatccttacaaagagattgccttcttttgggtctcatcatcaagagtgatatcctatcatttgaatacctcaaaggttcaagagttgggcatcttattccatttacccggtatagcgcagtcatttctatacacaccgtgctggatggaactatttgaaaataacaattag
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| Protein seq | MNNMEAALPEDLLANVLGRLPPCSLAVSRCVRKDWRALIDNRRLLRADLLPLRLDAFFFKGQILTSHPYFFSSRSTARRIGGRLDFLDTFNDEDLQIMDHCNGLLLFFERLANPATRQWMHLPTFPMSPCVTLGLRTGFCLVYDPMVSPHHFEVFCVPLVPENIFYRSSDNLDPNSNSSVDQESLEWPLSSRCTTHVFSSRKWRWEERSFVRQQGVEPANETIADLQFHPQQFQRRALYLKGEIYVQCKNNSLMRITLSNDKYQMIKSPVESKIDDGNGVLQLGKSEKGVYFVLLMKDNNFPQFQVWLLNKSSSCGGQVEWALKANISLEAIMDNFPLNTDNSFSRPWILNYVTEEAIRRAQEEEEELEWDFENGIILETKDKAEAHHLNNIYFIGFHPYKEIAFFWVSSSRVISYHLNTSKVQELGILFHLPGIAQSFLYTPCWMELFENNN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0149500 | RBH | 0.0 | 0.146077 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05600 | RBH | 0.0 | 0.098249 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0149500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003800 | RBH | 0.0 | 0.0 | 1.722898 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003890 | RBH | 0.0 | 0.0 | 0.369380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003830 | RBH | 0.0 | 0.0 | 0.163534 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003670 | RBH | 0.083895 | 0.079835 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003820 | RBH | 0.0 | 0.0 | 2.112775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0046300 | RBH | 0.01398 | 0.042781 | 0.4257985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003750 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0048700 | RBH | 0.17391 | 0.0920315 | 2.890241 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003910 | RBH | 0.0 | 0.186436 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003760 | RBH | 0.0 | 0.0 | 0.173491 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003710 | RBH | 0.0 | 0.0 | 1.218728 |
