Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os02g05600 OGI:02008870 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr02:2722136-2725218
Gene Symbol -
DNA seq

ATCACCTGCCGCTGCCGCTGAAGCGAATCGCCGCCGCCGTCCTCGAATCGTCGACCCGGTTCGTCTTCCTCCCCGCGCGCGCGATCCATCTATTACAGCCTCGAGGTGAGATAAAATTCCGTTTGTCCTCCTGTTCTAAGGTTGCATGCGCGTTCTCATTGGCTCCAATGGGGATTTTCTTTTCTTCAGTAAATTTCTTGATGTTTGGGGGCGGCCTGGGCCTGCGCGTGCTCCGATGGGGATTTTTTTTAGGTAAACATGCTGATGTTCGCGTAAACTAGGTTTGTGTGTTACCCTAGCGCGTGGTGGTTGGTTGCTTGCAATGCGATTGATTAGGTTTTGCGTAATGGGTTCGATCGGATGGGTTGTGGGGTTGGGCGACCAGAAGATTTATGAGTAGTAGCGTCAGATCAGTTTTAGACAATTAATTGGTTGCATCTTTTCTCTTGATAGTCCGCCTGTTCTACACTTGTGCTACCTGTAGGTAGAGATTGTTAATTTCTCATATATAGCACCATGTGCTGATCCTTAATTTTGTTGGTAATTTGTATATGTAAAATTGTTAAATTTTTCAAACTCTTTTCTGCTCGCTCCAGGCTGTCGATTAATCTCCTGGCTATTTACTTGAGTGTTGCTGCCTATACCAAAGAGCAGTCCATTAGCGCGTGATTAATTAAGTATTAACTTTTTTTAAAAAAATAGATTAATTATATTTTTTAAGCAACTTTCATATATAAACTTTTTGCAAAAAACACTACGTTTTGCAATTTGAAAAGCGTGCGCGCGGAAAACGAGAGAGGTTAGGGAGAGGCAATTAATTATATTTTTTAAGCAACTTTCATATATAAACTTTTTGCAAAAAACACTCCGTTTTGCAATTTGAAAAGCGTGCGCGCGGAAAATGAGAGAGGTTAGGGAGAGGCACAAACGAACACAGATTGTGAACTCAGGCACTTTGGGGTTGATAACTTTGTACTGTAGCAGTACAATGTTTTGTCTATTAAGAACTAAAGGATGGGCCCATAACTAAGATGGGAGGGTGTATAGAGTTATCTGTATATTATTGGTTAAATTAGCATGTAACGTTCTACATATTGGTTTAGTATATGTAAAACCTTTTGCTCTGCTTCAGCTTATTTGTGCTCTGCTTATTGATATCTTTATGTTAACACACAGATATATCCATCTTGCGCTGCCATTGCTTCCAATCAGAGACCGGATTGATCAATGAACAATATGGAGGCGGCACTACCTGAGGACTTGCTGGCCAACGTCCTTGGCCGCCTCCCACCGTGCAGCCTCGCCGTGTCACGCTGTGTCCGCAAGGACTGGCGTGCCCTCATCGACAACCGACGCCTCCTTCGTGCTGACCTCCTCCCTCTCCGCCTCGACGCTTTCTTCTTCAAGGGCCAGATCCTCACGTCTCACCCCTACTTCTTCTCGTCACGCTCTACGGCACGCCGGATCGGTGGCCGCCTCGACTTCCTCGACACCTTCAATGACGAAGATCTACAGATCATGGATCACTGCAATGGCCTGCTCCTGTTCTTCGAGCGGCTCGCCAACCCTGCCACTCGCCAATGGATGCACCTGCCTACCTTCCCGATGTCGCCATGCGTCACGCTGGGCTTGCGCACGGGCTTCTGCCTCGTATGATCCCATGGTATCGCCGCACCACTTTGAGGTGTTTTGTGTCCCTTTGGTTCCCGAAAACATCTTCTATAGAAGCAGCGATAATTTGGACCCCGACAGCAACAGCAGCGTTGATCAGGAGTCATTAGAATGGCCGTTGTCATCGCGGTGCACAACACACGTCTTCTCGTCGAGGAAATGGAGGTGGGAGGAGAGGTCATTTGTCCGCCAACAAGGAGTGGAGCCTGCCAATGAGACCATTGCCGACCTACAATTTCATCCCCAGCAATTCCAACGCCGTGCCTTATATTTGAAGGGAGAAATTTATGTGCAATGCAAGAACAATTCTCTTATGAGGTAAGTGAATAAATCTGTGAGCTTTTTTAATGGTACTAGTAAAAACACTTAGAACTTCAATGATAGAAGGGTTTGTGAACATAATAAATGTTAAAAAAAATCATTTAGGACAAAATATAGTTGGTTCATGAAACAAACTGATGTTGCTGGTGGGTCCTGTAATTATGGACACCTTCACAGCTTGCTACCTAGCACAGAGAGCCAGTCTCCAAGCCAGAAATATAAAACTGAAAAAGAAATACTCGCTCCTTGTATGCATGATTTTACTGAGAAATATAAAACTGAAAAAGAAATACTCGCTCCTTGTATGCATGATTTTACTAACATGCTTTCTTGTTAATGGCTCAACCTCAATTTGCAGAATAACCCTGTCAAATGATAAGTACCAAATGATCAAATCGCCAGTAGAGAGCAAAATTGATGATGGCAACGGCGTCCTTCAGTTGGGAAAATCAGAGAAAGGAGTCTACTTTGTGTTGCTTATGAAGATAATAATTTCCCCCAATTTCAAGTTTGGTTGCTCAATAAATCTTCATCATGTGGTGGTCAGGTTGAGTGGGCGTTGAAGGCTAACATCAGCCTTGAAGCAATTATGGATAATTTTCCTCTTAACACTGACAATAGTTTCAGCAGACCATGGATCCTAAACTATGTGACCGAAGAAGCAATACGAAGGGCACAGGAGGAGGAGGAGGAACTTGAATGGGACTTTGAAAATGGTATCATCCTTGAAACCAAAGATAAGGCGGAAGCACACCATCTTAATAATATTTATTTTATAGGGTTTCATCCTTACAAAGAGATTGCCTTCTTTTGGGTCTCATCATCAAGAGTGATATCCTATCATTTGAATACCTCAAAGGTTCAAGAGTTGGGCATCTTATTCCATTTACCCGGTATAGCGCAGTCATTTCTATACACACCGTGCTGGATGGAACTATTTGAAAATAACAATTAGCTGCTAGCTAGTAGTTACTTTATCAAAGTTAGCACGTATTCATACACATTTAAATAAATATGTTCCCTTTTAATATATATATGTATGAACGATTGTTTAATTTAATAATTCATTCCTAGCTCCTTGCGTTGATAAT

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CDS seq

ATGACGAAGATCTACAGATCATGGATCACTGCAATGGCCTGCTCCTGTTCTTCGAGCGGCTCGCCAACCCTGCCACTCGCCAATGGATGCACCTGCCTACCTTCCCGATGTCGCCATGCGTCACGCTGGGCTTGCGCACGGGCTTCTGCCTCGTATGATCCCATGGTATCGCCGCACCACTTTGAGGTGTTTTGTGTCCCTTTGGTTCCCGAAAACATCTTCTATAGAAGCAGCGATAATTTGGACCCCGACAGCAACAGCAGCGTTGATCAGGAGTCATTAGAATGGCCGTTGTCATCGCGGTGCACAACACACGTCTTCTCGTCGAGGAAATGGAGGTGGGAGGAGAGGTCATTTGTCCGCCAACAAGGAGTGGAGCCTGCCAATGAGACCATTGCCGACCTACAATTTCATCCCCAGCAATTCCAACGCCGTGCCTTATATTTGAAGGGAGAAATTTATGTGCAATGCAAGAACAATTCTCTTATGAGAATAACCCTGTCAAATGATAAGTACCAAATGATCAAATCGCCAGTAGAGAGCAAAATTGATGATGGCAACGGCGTCCTTCAGTTGGGAAAATCAGAGAAAGGAGTCTACTTTGTGTTGCTTATGAAGATAATAATTTCCCCCAATTTCAAGTTTGGTTGCTCAATAAATCTTCATCATGTGGTGGTCAGGTTGAGTGGGCGTTGA

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Protein seq

MTKIYRSWITAMACSCSSSGSPTLPLANGCTCLPSRCRHASRWACARASASYDPMVSPHHFEVFCVPLVPENIFYRSSDNLDPDSNSSVDQESLEWPLSSRCTTHVFSSRKWRWEERSFVRQQGVEPANETIADLQFHPQQFQRRALYLKGEIYVQCKNNSLMRITLSNDKYQMIKSPVESKIDDGNGVLQLGKSEKGVYFVLLMKIIISPNFKFGCSINLHHVVVRLSGR

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os02g05600 LOC_Os02g05600.1 Chr02 2722136 2725218 + MSU_osa1r7
CDS seq

ATGACGAAGATCTACAGATCATGGATCACTGCAATGGCCTGCTCCTGTTCTTCGAGCGGCTCGCCAACCCTGCCACTCGCCAATGGATGCACCTGCCTACCTTCCCGATGTCGCCATGCGTCACGCTGGGCTTGCGCACGGGCTTCTGCCTCGTATGATCCCATGGTATCGCCGCACCACTTTGAGGTGTTTTGTGTCCCTTTGGTTCCCGAAAACATCTTCTATAGAAGCAGCGATAATTTGGACCCCGACAGCAACAGCAGCGTTGATCAGGAGTCATTAGAATGGCCGTTGTCATCGCGGTGCACAACACACGTCTTCTCGTCGAGGAAATGGAGGTGGGAGGAGAGGTCATTTGTCCGCCAACAAGGAGTGGAGCCTGCCAATGAGACCATTGCCGACCTACAATTTCATCCCCAGCAATTCCAACGCCGTGCCTTATATTTGAAGGGAGAAATTTATGTGCAATGCAAGAACAATTCTCTTATGAGAATAACCCTGTCAAATGATAAGTACCAAATGATCAAATCGCCAGTAGAGAGCAAAATTGATGATGGCAACGGCGTCCTTCAGTTGGGAAAATCAGAGAAAGGAGTCTACTTTGTGTTGCTTATGAAGATAATAATTTCCCCCAATTTCAAGTTTGGTTGCTCAATAAATCTTCATCATGTGGTGGTCAGGTTGAGTGGGCGTTGA

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Protein seq

MTKIYRSWITAMACSCSSSGSPTLPLANGCTCLPSRCRHASRWACARASASYDPMVSPHHFEVFCVPLVPENIFYRSSDNLDPDSNSSVDQESLEWPLSSRCTTHVFSSRKWRWEERSFVRQQGVEPANETIADLQFHPQQFQRRALYLKGEIYVQCKNNSLMRITLSNDKYQMIKSPVESKIDDGNGVLQLGKSEKGVYFVLLMKIIISPNFKFGCSINLHHVVVRLSGR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.098249 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0149500 RBH 0.0 0.146077 0.000000
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os02g0149500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0003810 RBH 0.0 0.0 0.694627
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0003900 RBH 0.0 0.0 0.680185
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0003840 RBH 0.947892 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0003670 RBH 0.083895 0.079835 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0003820 RBH 0.0 0.0 2.112775
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0046300 RBH 0.01398 0.042781 0.4257985
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0003750 RBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0048700 RBH 0.17391 0.0920315 2.890241
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0003870 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0003680 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0003950 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0003910 RBH 0.0 0.186436 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0003720 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G003760 RBH 0.0 0.0 0.173491
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0003710 RBH 0.0 0.0 1.218728
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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