Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0023420 | OGI:01073710 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:25061932-25064204 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaagacccgcaaaataggacccttgcactatgaatggccttatcgtcttgcagcgtgtagtaggtctttgcgccttcagtgctgcacgcattgttcccaattccaccgcgcgccgcatgaccgcataggccatcacaactctgtgccaccctgccggttgaatcaccgcgatcgagctcatcgtccccctttggaatacctgggattaagtgatcaagccctgcccggctgccacgtccaaggctccaaacaacaatcttgcttcttcattttgtccacatgtagtcagtgttttaatcttgcagagtgagtcggatttcaattccatttcattacttcatgttggggattgctaatcatatatgtgataatcagggtgaggggattaggaaccaccaaaagggtcagtgccgtctagtgagagttccaaactaagggatgatcaatctgtttttcacataattaattacaataagccatcaagggatgaattgattaatcaagcatacaatcatacatgctacagtgagtgatcgatttgctagttcaacataatgattggtaagattgttttaattaatatgatatattttttatcattttgtatttatgagttagtgtctgaccgctaatatgtatttttttctattattagcctgtacttggtatcatgtcatgtccaccgagcaacaatttttttatcctacactaagggctgcaattttagtttcactctgggcaggtccacccaatatacatctgtactgtccaattccaatatattgacatgaaaggaaatgcctagaaaaattaacacaactagccattagacagcgaggtgatgcacaaccaggaaaagttaaagtacaaaagcgccgcatcattacctgttgtaagccgcatccaaattcaggtagttggagaattcaaaaggtaggaatggctcattgccaaagaggttgcaggaggttgttgagctgttgtcgtcaccaggtttcaaggtgcttcttaatgtataagtgtttcgcaggcctagagtcctccttaccatgtcaagtgcaacgaaggctgccttatcattagaaccttcttccaggggcaatgcgaagtagatgacattgggatcttccatgtcaacaagagggaattccggtacaatctgaggaagatgttcattgctggcaagggagaaaaaaacattagcatctagagaggcatcctttatccacgaaagacgatcgctggtcaatgtccaggaggtgatagtgaaaggagtaggacagctttctaggtcgttgcctgcagaaaaccaagtgtcttcggaagccacatcaacaaacttcatgcctccattttttgtcacgcacacgcttctatacatatgcatggatcctctcatggcaagctcttggtcatacgaacctgggtaaggattcacaggcagcctgacatagcggaaatcagggattggactgaaaacatcacagagcaatatgcccctcaagtaatccacccagtacaaagaatcaccaaaaggcacgaccaagtcagtctcccaccagcacaaatcctggtcttcaccggcagcatgatggattcgcaaccaattagtgcctcagaagccaccagcatacttgcacagctcagctgccactgggcgagggatcggcggacccgagccaccataatctcctactgaagtcatccctccaaggtgagccacaacaaactctccgttgctgcggcacagtgtcccggtgttcctactcccgtcaatgttgatgacgccatggtagcaaggggggagcctcgtgagatcaaccgcgcgagcgggctggtagatgaacagctcttcacggagggagacaacgtacggcgttattgggtccctgacgttgaagatgcagctcaggaggacggagtcgccgtgggccgctatgactctgcctctggcggaggaatcgctctcgtcggagtctgagtccgacgagtccgtggtctgcctgttcttgtttggatgcaaggcgaacaagaggcgggaaatcgccgggggagccgccgcgctgaaggcaacggtgatgccgtcgccggtggaggtggttccttttgccacggtgattgctccaaggtcgtcgtccccgctcatgtcgccgacgcggcaatcgagcattacccagcccggatgggattcccggcgtattcgagctcgctttacagccaatggcatccggggctgaaatccatccagcgtggctgcttcacatgagctcat
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| CDS seq | atgagctcatgtgaagcagccacgctggatggatttcagccccggatgccattggctgtaaagcgagctcgaatacgccgggaatcccatccgggctgggtaatgctcgattgccgcgtcggcgacatgagcggggacgacgaccttggagcaatcaccgtggcaaaaggaaccacctccaccggcgacggcatcaccgttgccttcagcgcggcggctcccccggcgatttcccgcctcttgttcgccttgcatccaaacaagaacaggcagaccacggactcgtcggactcagactccgacgagagcgattcctccgccagaggcagagtcatagcggcccacggcgactccgtcctcctgagctgcatcttcaacgtcagggacccaataacgccgtacgttgtctccctccgtgaagagctgttcatctaccagcccgctcgcgcggttgatctcacgaggctccccccttgctaccatggcgtcatcaacattgacgggagtaggaacaccgggacactgtgccgcagcaacggagagtttgttgtggctcaccttggagggatgacttcagtaggagattatggtggctcgggtccgccgatccctcgcccagtggcagctgagctgtgcaagtatgctgaccaggatttgtgctggtgggagactgacttggtcgtgccttttggtgattctttgtactgggtggattacttgaggggcatattgctctgtgatgttttcagtccaatccctgatttccgctatgtcaggctgcctgtgaatccttacccaggttcgtatgaccaagagcttgccatgagaggatccatgcatatgtatagaagcgtgtgcgtgacaaaaaatggaggcatgaagtttgttgatgtggcttccgaagacacttggttttctgcaggcaacgacctagaaagctgtcctactcctttcactatcacctcctggacattgaccagcgatcgtctttcgtggataaaggatgcctctctagatgctaatgtttttttctcccttgccagcaatgaacatcttcctcagattgtaccggaattccctcttgttgacatggaagatcccaatgtcatctacttcgcattgcccctggaagaaggttctaatgataaggcagccttcgttgcacttgacatggtaaggaggactctaggcctgcgaaacacttatacattaagaagcaccttgaaacctggtgacgacaacagctcaacaacctcctgcaacctctttggcaatgagccattcctaccttttgaattctccaactacctgaatttggatgcggcttacaacagaagcaagattgttgtttggagccttggacgtggcagccgggcagggcttgatcacttaatcccaggtattccaaagggggacgatgagctcgatcgcggtgattcaaccggcagggtggcacagagttgtgatggcctatgcggtcatgcggcgcgcggtggaattgggaacaatgcgtgcagcactgaaggcgcaaagacctactacacgctgcaagacgataaggccattcatagtgcaagggtcctattttgcgggtcttag
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| Protein seq | MSSCEAATLDGFQPRMPLAVKRARIRRESHPGWVMLDCRVGDMSGDDDLGAITVAKGTTSTGDGITVAFSAAAPPAISRLLFALHPNKNRQTTDSSDSDSDESDSSARGRVIAAHGDSVLLSCIFNVRDPITPYVVSLREELFIYQPARAVDLTRLPPCYHGVINIDGSRNTGTLCRSNGEFVVAHLGGMTSVGDYGGSGPPIPRPVAAELCKYADQDLCWWETDLVVPFGDSLYWVDYLRGILLCDVFSPIPDFRYVRLPVNPYPGSYDQELAMRGSMHMYRSVCVTKNGGMKFVDVASEDTWFSAGNDLESCPTPFTITSWTLTSDRLSWIKDASLDANVFFSLASNEHLPQIVPEFPLVDMEDPNVIYFALPLEEGSNDKAAFVALDMVRRTLGLRNTYTLRSTLKPGDDNSSTTSCNLFGNEPFLPFEFSNYLNLDAAYNRSKIVVWSLGRGSRAGLDHLIPGIPKGDDELDRGDSTGRVAQSCDGLCGHAARGGIGNNACSTEGAKTYYTLQDDKAIHSARVLFCGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0023420 | OsLaMu_01g0023420.01 | Chr01 | 25061932 | 25064204 | - | NAM | ||
| CDS seq | atgagctcatgtgaagcagccacgctggatggatttcagccccggatgccattggctgtaaagcgagctcgaatacgccgggaatcccatccgggctgggtaatgctcgattgccgcgtcggcgacatgagcggggacgacgaccttggagcaatcaccgtggcaaaaggaaccacctccaccggcgacggcatcaccgttgccttcagcgcggcggctcccccggcgatttcccgcctcttgttcgccttgcatccaaacaagaacaggcagaccacggactcgtcggactcagactccgacgagagcgattcctccgccagaggcagagtcatagcggcccacggcgactccgtcctcctgagctgcatcttcaacgtcagggacccaataacgccgtacgttgtctccctccgtgaagagctgttcatctaccagcccgctcgcgcggttgatctcacgaggctccccccttgctaccatggcgtcatcaacattgacgggagtaggaacaccgggacactgtgccgcagcaacggagagtttgttgtggctcaccttggagggatgacttcagtaggagattatggtggctcgggtccgccgatccctcgcccagtggcagctgagctgtgcaagtatgctgaccaggatttgtgctggtgggagactgacttggtcgtgccttttggtgattctttgtactgggtggattacttgaggggcatattgctctgtgatgttttcagtccaatccctgatttccgctatgtcaggctgcctgtgaatccttacccaggttcgtatgaccaagagcttgccatgagaggatccatgcatatgtatagaagcgtgtgcgtgacaaaaaatggaggcatgaagtttgttgatgtggcttccgaagacacttggttttctgcaggcaacgacctagaaagctgtcctactcctttcactatcacctcctggacattgaccagcgatcgtctttcgtggataaaggatgcctctctagatgctaatgtttttttctcccttgccagcaatgaacatcttcctcagattgtaccggaattccctcttgttgacatggaagatcccaatgtcatctacttcgcattgcccctggaagaaggttctaatgataaggcagccttcgttgcacttgacatggtaaggaggactctaggcctgcgaaacacttatacattaagaagcaccttgaaacctggtgacgacaacagctcaacaacctcctgcaacctctttggcaatgagccattcctaccttttgaattctccaactacctgaatttggatgcggcttacaacagaagcaagattgttgtttggagccttggacgtggcagccgggcagggcttgatcacttaatcccaggtattccaaagggggacgatgagctcgatcgcggtgattcaaccggcagggtggcacagagttgtgatggcctatgcggtcatgcggcgcgcggtggaattgggaacaatgcgtgcagcactgaaggcgcaaagacctactacacgctgcaagacgataaggccattcatagtgcaagggtcctattttgcgggtcttag
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| Protein seq | MSSCEAATLDGFQPRMPLAVKRARIRRESHPGWVMLDCRVGDMSGDDDLGAITVAKGTTSTGDGITVAFSAAAPPAISRLLFALHPNKNRQTTDSSDSDSDESDSSARGRVIAAHGDSVLLSCIFNVRDPITPYVVSLREELFIYQPARAVDLTRLPPCYHGVINIDGSRNTGTLCRSNGEFVVAHLGGMTSVGDYGGSGPPIPRPVAAELCKYADQDLCWWETDLVVPFGDSLYWVDYLRGILLCDVFSPIPDFRYVRLPVNPYPGSYDQELAMRGSMHMYRSVCVTKNGGMKFVDVASEDTWFSAGNDLESCPTPFTITSWTLTSDRLSWIKDASLDANVFFSLASNEHLPQIVPEFPLVDMEDPNVIYFALPLEEGSNDKAAFVALDMVRRTLGLRNTYTLRSTLKPGDDNSSTTSCNLFGNEPFLPFEFSNYLNLDAAYNRSKIVVWSLGRGSRAGLDHLIPGIPKGDDELDRGDSTGRVAQSCDGLCGHAARGGIGNNACSTEGAKTYYTLQDDKAIHSARVLFCGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0175500 | SBH | 0.605065 | 0.232691 | 1.663708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0175500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024330 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023920 | RBH | 0.079011 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024220 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0395900 | RBH | 0.0608085 | 0.2404945 | 0.178562 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023270 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385200 | SBH | 0.4181225 | 0.199026 | 0.2980725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023510 | RBH | 0.072193 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023610 | RBH | 0.0 | 0.0 | 0.210714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023310 | RBH | 0.0 | 0.0 | 0.360816 |
