Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0175500 | OGI:01014310 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:3875771-3877745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGCCGAAAACTGATCGGGTGGTGCGGCCTCTCTCGCCTTTGATTTACCCTTTCGCGCACCAAACACCAAACCCTCGCCGCCGCCGGCGCCGCCATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGTAATAATTTCATGTCTAGTTTGCCAAATGCATGCCATACTGTTCTTTTGGTTGCATGTTGTACAGAATTTTCCTAGTTTGAAGTGAATTGTTCTGCCCATTTATGTTTAGACAGCATTGACGTTGTGGTAGCTTGATCAGTCAAGAGCATGATTTTAGATGAATATAATTGTGGCTAGGATTTAGCTATTTAGCAGCACCAACGTTTCTTGCTCCCTTTAATTACTTGGTCCTGAATCCCTCTATAACTCATCCTATAGTTTATACAAAATCGATGTTTGTTTGCATGTTTTTATTTCGTCTTCTCGACACTTTTTCTAAAAATATCACTGAACCATTTCTGAATCTTAATTTCAAGCAGGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGAGCAAGTTCCC
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| CDS seq | ATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGAAGTTGATAAACTAG
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| Protein seq | MRIPTETETETGTGARIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSLDGAGDSNPTWVILNRVGARRDSFRGDRTTSVASRTSGGKEISVSFELAPPPETSLLTLDWPQGPRPSEGTTSYPYVIAAHGNVVLLEIISTAKCPRPIDIDYFVYKAKPNGEPSLTRLPVCYWKGASGRDNPRPRIMSRVAMGVLSCSKDSFVVAEMERRSYQPSAANIYMFFSGSDGWRVFRDVRIDHINGAGWWSTDAVLSYRRRYLIWVDYLRGMIVAKLAHPGGGDPQEPALWYVPLPVDPVMGNPYDSERGRGCPEASRNVCATHHGIKFVNIINQCGGSFSITLWSWCEDGTWREDATLDAAQLWDLDCENRLPNVQPEFPIVDMENPYTVCFLLNEGNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQNTTYMTARRMSERLSFISSEMPYYLSGQTMKRKLIN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0175500 | Os01t0175500-01 | Chr01 | 3875771 | 3877745 | + | irgsp1_rep | ||
| CDS seq | ATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGAAGTTGATAAACTAG
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| Protein seq | MRIPTETETETGTGARIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSLDGAGDSNPTWVILNRVGARRDSFRGDRTTSVASRTSGGKEISVSFELAPPPETSLLTLDWPQGPRPSEGTTSYPYVIAAHGNVVLLEIISTAKCPRPIDIDYFVYKAKPNGEPSLTRLPVCYWKGASGRDNPRPRIMSRVAMGVLSCSKDSFVVAEMERRSYQPSAANIYMFFSGSDGWRVFRDVRIDHINGAGWWSTDAVLSYRRRYLIWVDYLRGMIVAKLAHPGGGDPQEPALWYVPLPVDPVMGNPYDSERGRGCPEASRNVCATHHGIKFVNIINQCGGSFSITLWSWCEDGTWREDATLDAAQLWDLDCENRLPNVQPEFPIVDMENPYTVCFLLNEGNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQNTTYMTARRMSERLSFISSEMPYYLSGQTMKRKLIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0175500 | RBH | 0.605065 | 0.232691 | 1.663708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08010 | RBH | 0.421749 | 0.129670 | 0.354841 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005530 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005230 | RBH | 0.000000 | 0.0 | 0.620420 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005470 | RBH | 0.0 | 0.0 | 0.420112 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005130 | RBH | 0.0 | 0.076556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005340 | RBH | 0.327424 | 2.174490 | 1.424129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0069200 | RBH | 0.5541595 | 2.200312 | 5.333437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005290 | RBH | 0.061393 | 0.0 | 0.234603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0069600 | RBH | 0.72933 | 2.2895145 | 3.762886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005100 | RBH | 0.052566 | 0.077099 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005290 | RBH | 0.115736 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005350 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005280 | RBH | 0.0 | 1.756817 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005320 | RBH | 0.0 | 0.0 | 0.225154 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005200 | RBH | 0.0 | 0.0 | 0.996085 |
