Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0019850 | OGI:01021950 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:21730163-21730799 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacctacctcaaggctgtcatcaaggagacacttcggttgcatccaccaagtcctcttctcgtcccacatctcgcgatggctgactgtgatattgatggctacacagttcgctcggggacacgtgtcatcgtcaatgcatgggctattggaaggaactctgaatcttgggaagctgcagaggagtttttgcctgagaggtttgttgatggtggaagtgccgcgaacgtagacttcatagggacagacttccagttcttgccgtttggcgcaagcggcggatctgtcctggaataaactttgcttctgcgagcatggagatcatcctagcaaaccttctgtaccattttgactgggatgtttcagctgaagcagccatagataaagatggcattgatatggctgaagcgttcgggttgtcagtgcagctaaaggaaaagctactgcttgtaccggtagagtataagggtagcgtgcaggattcggctgttatattatgataggattagtttctgtcgtatttatttgggattatgtaaaatccaagttatgtataactctatttgtacgccggtctctgagtctgaggttcaatatatcgaaccatatatagttacgtggtacatttatctcgttc
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| CDS seq | atgacctacctcaaggctgtcatcaaggagacacttcggttgcatccaccaagtcctcttctcgtcccacatctcgcgatggctgactgtgatattgatggctacacagttcgctcggggacacgtgtcatcgtcaatgcatgggctattggaaggaactctgaatcttgggaagctgcagaggagtttttgcctgagaggtttgttgatggtggaagtgccgcgaacgtagacttcatagggacagacttccagttcttgccgtttggcgcaagcggcggatctgtcctggaataa |
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| Protein seq | MTYLKAVIKETLRLHPPSPLLVPHLAMADCDIDGYTVRSGTRVIVNAWAIGRNSESWEAAEEFLPERFVDGGSAANVDFIGTDFQFLPFGASGGSVLE |
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| Function | 3-hydroxyindolin-2-one monooxygenase [UniProtKB/Swiss-Prot:Q43250] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0019850 | OsLaMu_01g0019850.01 | Chr01 | 21730163 | 21730799 | + | NAM | ||
| CDS seq | atgacctacctcaaggctgtcatcaaggagacacttcggttgcatccaccaagtcctcttctcgtcccacatctcgcgatggctgactgtgatattgatggctacacagttcgctcggggacacgtgtcatcgtcaatgcatgggctattggaaggaactctgaatcttgggaagctgcagaggagtttttgcctgagaggtttgttgatggtggaagtgccgcgaacgtagacttcatagggacagacttccagttcttgccgtttggcgcaagcggcggatctgtcctggaataa
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| Protein seq | MTYLKAVIKETLRLHPPSPLLVPHLAMADCDIDGYTVRSGTRVIVNAWAIGRNSESWEAAEEFLPERFVDGGSAANVDFIGTDFQFLPFGASGGSVLE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.005831 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0227700 | SBH | 0.0 | 0.0 | 1.051792 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36294 | SBH | 0.694386 | 1.365228 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0227700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020720 | RBH | 0.138254 | 0.0 | 0.016483 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020330 | RBH | 0.179635 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009160 | RBH | 0.699528 | 0.0 | 1.015152 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019940 | RBH | 1.507343 | 0.0 | 4.955079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0342900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019840 | RBH | 0.137242 | 0.0 | 0.051004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0335300 | RBH | 0.124826 | 0 | 0.012649 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019800 | RBH | 0.233246 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023690 | SBH | 0.0 | 12.636143 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021310 | RBH | 0.249962 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021030 | RBH | 0.0 | 0.0 | 0.0 |
