Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_01g0004940 OGI:01013640 | 15/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr01:3663380-3668992
Gene Symbol OsSERL5, OsBAK1-4, SERK1
DNA seq

gacaggcaaaactaatcatgttatgcatgaaaaatggagcagagactctccaatagaaaacttcttttttttttctatatttgctcatcaatctcatctctctttgccacctatagatgtgcaacaaggatgggctcacctcacataatgcttactgtatgtacaaatgaataccacctcggctatagacaacaatatggctctactcaatttggaaaattctcatcccccttagttgggcggttcaagagctctaatcaaatcaaacacatttgtcgcaaagaacgaatatcgacaccgatcacctcggtccagagagctccatggcttccaagccaagggaggattcgtctgcggcgaaatccatgaattttgggggtagaagctctgacgaaacggatttcggtgtgtcgacgttctgtgatgcctcccatttctccgcgagaccatccccttccagcattctgatcacctccgacattctgggacgatgagatgggtagtattgtgtgcacagcaaggccacctgaaccatttcctcgagctcgaccctgtcatagttgctacccaggtctttatccaccatcatgctcagctgcttttcctgatgaagcttctttacctggaacaaaaactcaagttatcagaaatgctgctcatgataaccgcctttaagaacaaattataccctttatcagtccttttagatctcaactgatttgaaaagaatatgctaaattatggtggatgtccacactagataaatagagatagatatgcatctagtttctcaagaacattttttcagcttatctgttctgctagggaaaagaagctccactatcttgcacatcaaatcttatcaatgcatgtactcaacAaaaaaaaggcaaaaaagatcctgagaatgacatacagacttgtcaaaaaaaagctctatgacggacgaaacaaaaggacatatcacaacaaactgagtggacatataaagcatatttatggtccttgggaggcattgaaggagagatgtatctggtactgttaataatgagatattacgaggaacaaggtatttggtgtaccagaaatcaacattagaagatatttgtctttcaatacctccaaggatggggaaaaaattcaaaagtaatttaaggaaaaaatttctctgtttccaaagaaaaagtgagtaagcatatagagaacacaaaaaacatacccaatcaagcactcctcccttctgattcgctagccttccaaagtccaatgccttctgaccagtgatcaactcaaccaacaaaactccaaacccaaaaacatccgtcttctccgatgactgcccagttgacaaatactctggagctatgtgccctactgtcccacgtactgcagtggtaacatgagactccctatgatccaaaagtttcgccaatccgaaatctcccacaattgcttcgaagtattcatcaagaagcacattggaggcttttacatcacggtgaattatttttggatcacactgttcatgcaaataaagcaaccctcgtgctgtgcctagtgctatcctctttctccttgaccaatctagagctggcttgccatttacaagttctgaaaaagatagataatgtttagatgccatgtagcataaaacagagaaggttaatttacttgcaagctactcagataatgttccattacatccgcttttattgaatagtagtatagcaataaaatcagtagaactagacatgccaattggatgggctcaggatcagttcacattccatatatggtaccagtgcaatgtattggatgaacatataaacacctaaatcaatcagaggagcagggatagggttttaagttaattaacaaaacgaactaataccagcgtaagtagcatacttagtggcaaatttgctcgacagttatgacagatgcgcacgagaattttacatctaaaaaattatggttgaagttcataatcatgtttctcccttgtgataaactcgtctatctttttcttcaactttttttttaaggatttgagacttaggacaagttagcgccacaaatacatatatgtatacacataagatttacaagcatggacttaccccgcaactgagaagcgacacttccatttggcatataaggataaacaagtaatctttcgttctctgtggtgcagaatccaatgagtctaaggagattccgatgaacagccaagcttatgacttcaacttcagtttggaactgaacctccccaccaacagcattatagtccttcaatcttttgacagcaacaattgcaccatcacgtagaaaacctttgtatactattccatacccgccttcacctaaaatattctttgagttgaaattattggtagctgctcgaagctccttaaaggcataacgctttagatgacccaaacatacttctgggtcatattgatctgcagataaggtatcaagtattactgtactggaaaccgaaacaacaaaatatgtaatctggaagagcatgcgtagaaacatagaacatgttaaaagatcagattaagcccataggtgcaaaagaagacatgtcatgctctatccatggcaaatcagcataccgaaggtaacggggacatcatggttctgaactgcaccaaaggttttcctaaaagtacaaacacgcctaatataggggaataaagctatctctctttacagttgggcccaagagtaaatttaatacttgtccactaaaacagcttggccatttatttgtgtatgatgttaaagtaaaaaagaggacaagcacccatgcattaacgtgtaaaatcccagaggcaactccactaggaatctttcagctagtaaattcaagacatatggcgtctttgtacagaagagaataatcaaggttcccttcatgactaagtaagaaactgaacatattagggcatggcccaggtcaaggactcatttaagtcatgtacttcataatcatctagtaatgttgtcttgggcagcttgcatgatgttagggacactagtgtgcagctttatgaaacgagctgttcatacaaattcagttctgttgggagcatggaatcttgtcagcaaaaacccatatgatcacaggtgcctctttgttatggtccactaatcaacagaatttaaaacttgctacagatatcacataatacatcacggaagattaatgcaatgctcaaattttgcagcagaaagggtccttccttttttagaatattatacagtttcagtagaggtaatcattcagcttgtgcaaagatcaataataggttattgaaccactaacatttctacaacatgttcaaccacatggatgtcccatgtaaatttgctatcaaattgaacgctgtgaaaaatacgcctcaaaactcaagtaatgcagaacattcagccactgttgtagtgaagacatcaattactatcgaaatctagatagagttactacgggaacaaaagcgtgcagaaatgaaaagaacattaccatttacatcaaaaaagatctgctgattgcgcctatgccgccaccaaagaagcatactgactatgatagttgcaaatgctaccgaaccaacagtgactccacagataatagctatacggtggcttcttgcgatgccttgttgtggctgagctgaggaagaggaaacaaatatgagttgcacaaatagataaaacaatacaaaagagctcaatgatgaacaaaatctcactcttaagatcatctggagggtatgaaagtggatccatcgatacagaagagcaattatctccagacttgacaccacagatcattggatttcccacaatgctgtcaaataagtataataccaaaaatgcaaggataagacagtagcctacagcatgcaaatagagcattaagtgagaattcaaatgttcaaagggataggggataagatgaatttactgacttgaaagttcttgaagaaatctttggcaatggaccgctcaaattattgaatgaaagatctctgcaacacaagaccaattcaaggtaactattaagcataccaacgaatgataaagacaagaataacaaaatgatcaattgatttttttttaaaaaaaaggattaagagacatacactagagcaaggccattgatggcggctaatgaatcaggtagaactccagataagctgttgttgttcaacttcctgtagcaacaagaggaacggaaaatgactcaaaatatattgcagcaggcagtgagtgaggactcaagaaccaaagaaagaaatcgtacagatagttgaggttcttgagatcgccaattgaactcgggatactcccagtaatctgattgtctgacatgtcaagcgtctgcagcatccccaacctgcctatgctggcaggaatagtgccagatattgcattgttctgtaatagcctgtagaacaaggaggttgaaacacttgtaatacttcttgaaatgccataggcagcacaaacaaggccggatcagtcatcagtgacagcttacacagattgcagcctggtgaggttcccaattccgggggataatttgcctgacaagctttggctgggcagacctctgcaagcaaagatgatacaacaagattagcagccatggctggtgctcgccgaaggcggctgcggaggaatgaacaaatgggcggctgaacggacagcgcggagacgtagccgtcggcggagcaggtgaccatcctccagctgcagggatcgacggagttgatgtcccagttgtcgagcacgttgtaggggtcttgcagctccgtcttgatggccatcagcgccaccactgcgaagcaaacaaagctcagctctccaccaaatcttagcaacaaacagctcaagcttggtagccacagaaacagcatttgcgctttgttcaaagccaggaggattgtcgctttgcatgagagagtcgcttgctttgtgaatcgacattgccccccaaaaagaaccaaatctttattatcaaaatttcactggatcctctttaatccaaaaagaaaagacttcttctttttgaaataaaggcaacaaacagattgaacagacattataaaatgagagcagcggcagcatcgaaaagcgttggatttttcttgggattcttagatagagaaggcaagaagcgttaccttcgtagttgatgccggcgggagagagcgtggcggtggacgacggcagcaggatcacggcgagcacggcggcgagcggcgccgcccaccaccgcatcctcatcccacagattcgccctcctctctcctcaaccaaagaaacccaacacaattccacccccacaccagcagagcagctgcagcaacacacaactcctcaccaaaccatctccccacctcaccaacccaacccaacccaatccaagaacacaaacgacgacgagatgacgaagcgagatggtcacagatacagagcagagcaagcagaggcagagagaagtagagagagagagagagggaaagggaaagaaacggcagggagcaccggcctgggcagccgctccgacccctatcaatcgatcctcccctccgcaac

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CDS seq

atgaggatgcggtggtgggcggcgccgctcgccgccgtgctcgccgtgatcctgctgccgtcgtccaccgccacgctctctcccgccggcatcaactacgaagtggtggcgctgatggccatcaagacggagctgcaagacccctacaacgtgctcgacaactgggacatcaactccgtcgatccctgcagctggaggatggtcacctgctccgccgacggctacgtctccgcgctaggtctgcccagccaaagcttgtcaggcaaattatcccccggaattgggaacctcaccaggctgcaatctgtgctattacagaacaatgcaatatctggcactattcctgccagcataggcaggttggggatgctgcagacgcttgacatgtcagacaatcagattactgggagtatcccgagttcaattggcgatctcaagaacctcaactatctgaagttgaacaacaacagcttatctggagttctacctgattcattagccgccatcaatggccttgctctagtagatctttcattcaataatttgagcggtccattgccaaagatttcttcaagaactttcaacattgtgggaaatccaatgatctgtggtgtcaagtctggagataattgctcttctgtatcgatggatccactttcataccctccagatgatcttaagactcagccacaacaaggcatcgcaagaagccaccgtatagctattatctgtggagtcactgttggttcggtagcatttgcaactatcatagtcagtatgcttctttggtggcggcataggcgcaatcagcagatcttttttgatgtaaatgatcaatatgacccagaagtatgtttgggtcatctaaagcgttatgcctttaaggagcttcgagcagctaccaataatttcaactcaaagaatattttaggtgaaggcgggtatggaatagtatacaaaggttttctacgtgatggtgcaattgttgctgtcaaaagattgaaggactataatgctgttggtggggaggttcagttccaaactgaagttgaagtcataagcttggctgttcatcggaatctccttagactcattggattctgcaccacagagaacgaaagattacttgtttatccttatatgccaaatggaagtgtcgcttctcagttgcgggaacttgtaaatggcaagccagctctagattggtcaaggagaaagaggatagcactaggcacagcacgagggttgctttatttgcatgaacagtgtgatccaaaaataattcaccgtgatgtaaaagcctccaatgtgcttcttgatgaatacttcgaagcaattgtgggagatttcggattggcgaaacttttggatcatagggagtctcatgttaccactgcagtacgtgggacagtagggcacatagctccagagtatttgtcaactgggcagtcatcggagaagacggatgtttttgggtttggagttttgttggttgagttgatcactggtcagaaggcattggactttggaaggctagcgaatcagaagggaggagtgcttgattgggtaaagaagcttcatcaggaaaagcagctgagcatgatggtggataaagacctgggtagcaactatgacagggtcgagctcgaggaaatggttcaggtggccttgctgtgcacacaatactacccatctcatcgtcccagaatgtcggaggtgatcagaatgctggaaggggatggtctcgcggagaaatgggaggcatcacagaacgtcgacacaccgaaatccgtttcgtcagagcttctacccccaaaattcatggatttcgccgcagacgaatcctcccttggcttggaagccatggagctctctggaccgaggtga

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Protein seq

MRMRWWAAPLAAVLAVILLPSSTATLSPAGINYEVVALMAIKTELQDPYNVLDNWDINSVDPCSWRMVTCSADGYVSALGLPSQSLSGKLSPGIGNLTRLQSVLLQNNAISGTIPASIGRLGMLQTLDMSDNQITGSIPSSIGDLKNLNYLKLNNNSLSGVLPDSLAAINGLALVDLSFNNLSGPLPKISSRTFNIVGNPMICGVKSGDNCSSVSMDPLSYPPDDLKTQPQQGIARSHRIAIICGVTVGSVAFATIIVSMLLWWRHRRNQQIFFDVNDQYDPEVCLGHLKRYAFKELRAATNNFNSKNILGEGGYGIVYKGFLRDGAIVAVKRLKDYNAVGGEVQFQTEVEVISLAVHRNLLRLIGFCTTENERLLVYPYMPNGSVASQLRELVNGKPALDWSRRKRIALGTARGLLYLHEQCDPKIIHRDVKASNVLLDEYFEAIVGDFGLAKLLDHRESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGVLLVELITGQKALDFGRLANQKGGVLDWVKKLHQEKQLSMMVDKDLGSNYDRVELEEMVQVALLCTQYYPSHRPRMSEVIRMLEGDGLAEKWEASQNVDTPKSVSSELLPPKFMDFAADESSLGLEAMELSGPR

Function Protein NSP-INTERACTING KINASE 3 [UniProtKB/Swiss-Prot:Q93ZS4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0004940 OsLaMu_01g0004940.01 Chr01 3663380 3668992 - NAM
CDS seq

atgaggatgcggtggtgggcggcgccgctcgccgccgtgctcgccgtgatcctgctgccgtcgtccaccgccacgctctctcccgccggcatcaactacgaagtggtggcgctgatggccatcaagacggagctgcaagacccctacaacgtgctcgacaactgggacatcaactccgtcgatccctgcagctggaggatggtcacctgctccgccgacggctacgtctccgcgctaggtctgcccagccaaagcttgtcaggcaaattatcccccggaattgggaacctcaccaggctgcaatctgtgctattacagaacaatgcaatatctggcactattcctgccagcataggcaggttggggatgctgcagacgcttgacatgtcagacaatcagattactgggagtatcccgagttcaattggcgatctcaagaacctcaactatctgaagttgaacaacaacagcttatctggagttctacctgattcattagccgccatcaatggccttgctctagtagatctttcattcaataatttgagcggtccattgccaaagatttcttcaagaactttcaacattgtgggaaatccaatgatctgtggtgtcaagtctggagataattgctcttctgtatcgatggatccactttcataccctccagatgatcttaagactcagccacaacaaggcatcgcaagaagccaccgtatagctattatctgtggagtcactgttggttcggtagcatttgcaactatcatagtcagtatgcttctttggtggcggcataggcgcaatcagcagatcttttttgatgtaaatgatcaatatgacccagaagtatgtttgggtcatctaaagcgttatgcctttaaggagcttcgagcagctaccaataatttcaactcaaagaatattttaggtgaaggcgggtatggaatagtatacaaaggttttctacgtgatggtgcaattgttgctgtcaaaagattgaaggactataatgctgttggtggggaggttcagttccaaactgaagttgaagtcataagcttggctgttcatcggaatctccttagactcattggattctgcaccacagagaacgaaagattacttgtttatccttatatgccaaatggaagtgtcgcttctcagttgcgggaacttgtaaatggcaagccagctctagattggtcaaggagaaagaggatagcactaggcacagcacgagggttgctttatttgcatgaacagtgtgatccaaaaataattcaccgtgatgtaaaagcctccaatgtgcttcttgatgaatacttcgaagcaattgtgggagatttcggattggcgaaacttttggatcatagggagtctcatgttaccactgcagtacgtgggacagtagggcacatagctccagagtatttgtcaactgggcagtcatcggagaagacggatgtttttgggtttggagttttgttggttgagttgatcactggtcagaaggcattggactttggaaggctagcgaatcagaagggaggagtgcttgattgggtaaagaagcttcatcaggaaaagcagctgagcatgatggtggataaagacctgggtagcaactatgacagggtcgagctcgaggaaatggttcaggtggccttgctgtgcacacaatactacccatctcatcgtcccagaatgtcggaggtgatcagaatgctggaaggggatggtctcgcggagaaatgggaggcatcacagaacgtcgacacaccgaaatccgtttcgtcagagcttctacccccaaaattcatggatttcgccgcagacgaatcctcccttggcttggaagccatggagctctctggaccgaggtga

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Protein seq

MRMRWWAAPLAAVLAVILLPSSTATLSPAGINYEVVALMAIKTELQDPYNVLDNWDINSVDPCSWRMVTCSADGYVSALGLPSQSLSGKLSPGIGNLTRLQSVLLQNNAISGTIPASIGRLGMLQTLDMSDNQITGSIPSSIGDLKNLNYLKLNNNSLSGVLPDSLAAINGLALVDLSFNNLSGPLPKISSRTFNIVGNPMICGVKSGDNCSSVSMDPLSYPPDDLKTQPQQGIARSHRIAIICGVTVGSVAFATIIVSMLLWWRHRRNQQIFFDVNDQYDPEVCLGHLKRYAFKELRAATNNFNSKNILGEGGYGIVYKGFLRDGAIVAVKRLKDYNAVGGEVQFQTEVEVISLAVHRNLLRLIGFCTTENERLLVYPYMPNGSVASQLRELVNGKPALDWSRRKRIALGTARGLLYLHEQCDPKIIHRDVKASNVLLDEYFEAIVGDFGLAKLLDHRESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGVLLVELITGQKALDFGRLANQKGGVLDWVKKLHQEKQLSMMVDKDLGSNYDRVELEEMVQVALLCTQYYPSHRPRMSEVIRMLEGDGLAEKWEASQNVDTPKSVSSELLPPKFMDFAADESSLGLEAMELSGPR

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0004940 OsLaMu_01g0004940.02 Chr01 3663404 3668935 - NAM
CDS seq

atgaggatgcggtggtgggcggcgccgctcgccgccgtgctcgccgtgatcctgctgccgtcgtccaccgccacgctctctcccgccggcatcaactacgaagtggtggcgctgatggccatcaagacggagctgcaagacccctacaacgtgctcgacaactgggacatcaactccgtcgatccctgcagctggaggatggtcacctgctccgccgacggctacgtctccgcgctaggtctgcccagccaaagcttgtcaggcaaattatcccccggaattgggaacctcaccaggctgcaatctgtgctattacagaacaatgcaatatctggcactattcctgccagcataggcaggttggggatgctgcagacgcttgacatgtcagacaatcagattactgggagtatcccgagttcaattggcgatctcaagaacctcaactatctgaagttgaacaacaacagcttatctggagttctacctgattcattagccgccatcaatggccttgctctagtagatctttcattcaataatttgagcggtccattgccaaagatttcttcaagaactttcaacattgtgggaaatccaatgatctgtggtgtcaagtctggagataattgctcttctgtatcgatggatccactttcataccctccagatgatcttaagactcagccacaacaaggcatcgcaagaagccaccgtatagctattatctgtggagtcactgttggttcggtagcatttgcaactatcatagtcagtatgcttctttggtggcggcataggcgcaatcagcagatcttttttgatgtaaatgatcaatatgacccagaagtatgtttgggtcatctaaagcgttatgcctttaaggagcttcgagcagctaccaataatttcaactcaaagaatattttaggtgaaggcgggtatggaatagtatacaaaggttttctacgtgatggtgcaattgttgctgtcaaaagattgaaggactataatgctgttggtggggaggttcagttccaaactgaagttgaagtcataagcttggctgttcatcggaatctccttagactcattggattctgcaccacagagaacgaaagattacttgtttatccttatatgccaaatggaagtgtcgcttctcagttgcgggttttgttggttgagttgatcactggtcagaaggcattggactttggaaggctagcgaatcagaagggaggagtgcttgattgggtaaagaagcttcatcaggaaaagcagctgagcatgatggtggataaagacctgggtagcaactatgacagggtcgagctcgaggaaatggttcaggtggccttgctgtgcacacaatactacccatctcatcgtcccagaatgtcggaggtgatcagaatgctggaaggggatggtctcgcggagaaatgggaggcatcacagaacgtcgacacaccgaaatccgtttcgtcagagcttctacccccaaaattcatggatttcgccgcagacgaatcctcccttggcttggaagccatggagctctctggaccgaggtga

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Protein seq

MRMRWWAAPLAAVLAVILLPSSTATLSPAGINYEVVALMAIKTELQDPYNVLDNWDINSVDPCSWRMVTCSADGYVSALGLPSQSLSGKLSPGIGNLTRLQSVLLQNNAISGTIPASIGRLGMLQTLDMSDNQITGSIPSSIGDLKNLNYLKLNNNSLSGVLPDSLAAINGLALVDLSFNNLSGPLPKISSRTFNIVGNPMICGVKSGDNCSSVSMDPLSYPPDDLKTQPQQGIARSHRIAIICGVTVGSVAFATIIVSMLLWWRHRRNQQIFFDVNDQYDPEVCLGHLKRYAFKELRAATNNFNSKNILGEGGYGIVYKGFLRDGAIVAVKRLKDYNAVGGEVQFQTEVEVISLAVHRNLLRLIGFCTTENERLLVYPYMPNGSVASQLRVLLVELITGQKALDFGRLANQKGGVLDWVKKLHQEKQLSMMVDKDLGSNYDRVELEEMVQVALLCTQYYPSHRPRMSEVIRMLEGDGLAEKWEASQNVDTPKSVSSELLPPKFMDFAADESSLGLEAMELSGPR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr01 3664681 3665500 - OsLaMu_01g0004940.01 OsLaMu_01g0004940.02,OsLaMu_01g0004940.01 All

Expression

Leaf Root Panicle
FPKM 0.223466 8.565285 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0171000 RBH 1.029543 0.750263 5.844368
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g07630 RBH 0.670198 0.485747 1.448202
Nipponbare | IRGSP 1.0 | RAP-db Os01g0171000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0005180 RBH 0.198709 22.471918 13.860655
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0004880 RBH 0.292064 16.526175 4.680020
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0005140 RBH 0.259160 10.244317 14.904477
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0004780 RBH 0.092812 0.537383 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0005000 RBH 1.802634 31.688904 19.091120
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0065100 SBH 0.1107725 0.186216 0.3339905
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0004950 RBH 0.090218 1.026027 1.698518
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0065600 RBH 7.3264795 1.345549 41.529524
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0004760 RBH 0.120920 0.263994 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0004950 RBH 0.225211 9.656888 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0005000 RBH 0.000000 14.542777 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0004950 RBH 0.331919 0.904323 1.754206
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0005010 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G004990 RBH 0.000000 5.184141 6.102294
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0004880 RBH 0.185572 6.174233 6.629394
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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