Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0020130 | OGI:12065920 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:24682913-24690214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaaacacacacacacaattggattttaaacagagttgtttcataagtactataaataactgcttgttctcaattacataaagttttcataaaagttttaacagcctgatcccaagtacattacatagatgataacaatatcaaagtacacagatgacatatctcttcttttcaacacaacacattgatgatagatgtctttcagatgaagcgtgaaatgatacatacgaacagggatgggcaactcaaacaatgacagatagtcgacaagtccgggcataattattagcacacctcctgtcacaggaggctcttgatgggggcgtaatttttggacatcttttggtacgtgtacacgtactggattattattgggcatttcactctcgagaaagcacgggaaaacttcagcctctgaacagaaacttgccgaaactaaactcccttggttgatcatcaaacttagagcatgatagaaccaaccctgatgcagactgagatgttggcgatctggtcctctgaggaaccataaataaacaaggatataacctacacgatcgtaggtagttatttagctgagcatagattggacatagcattatgatcatcatcaaacaaaggcaaatgagagagagagagagatgtttttacctcaagcactaaattttgttgtgttcaaggagctagcgaactagtgtttggatcctcgttagtaatgtcgacaccaagagaagggaatgaagggatggacttgagaatcaacttcctgccactcttgcagatcggagacaatccggtaccaatgcgagggggagagaccctctttttattaggtgacacgaccttgacagaagtttgaggggatgattccccttttaggacatttgatgtaccatccccgagcatcatttctgcgtagctttcgaatggagagagtagaatgtcagacttcaggtgtccttcaagtcgagaagaatatccaccaagcttcgtcgacgatcttggcttcttggagctcaaaggtggaagagcaaccaagggtctaggaagaagattagaagaacaaaagaaaactgacattttagcattttacagaagagattgaatccacagtaacatgagtaattgtacgaggcagacctgtaatccacaactgaaggtgttgccagcacactctcagcaggagtaaggttgatactatcttgatagataacaagctgcttatcattatcagtggtttcttccttcacgcctccatccttttcttcgcatccacgcttagcttcctctatgcctaacagtgcaactccttcaatggaaaaaggtagagtaccataaaaaaccaataacttataaaccctcgcaaaactaaaaagaaaggtacctactaatgctatagtataggaattgttatgttgaacaaaatctgaaacagctatacatgatgtagacttgacctactaagatggttaccattgtctttactcacttgacagaagtttgaggggatgatttccctttcagggttctctatgtgcatcccccacaatcatttaatttccagtaaaaaaacaaatttaatttaaattattaatgatccaacctccaaatttaagtaactccatcaattcctacaatgaaatcttacctaggaagtacattttcaaacagaatagcatgcaagatattctaagattcctagtgctctcctgtatttaaatttacaagttgaaagatcaaagctgaatcctctagaaacatatgaaatactatttggaagcaaatatgaacctaaagagcacctcctctcccaactaacctttcctttgtatctgatatgtacatcacataaaataccacagatgcaactaatcttgagcaatgcatgcattttgcacatttataaaacaggatgtcaagatgaaacttaccctccctcctcccaaaagcattcttacaaccctcacatcggcaactcacagagcatccaacaccacccttcatttttttttaagaaaagtgacagtgagacaaatgccaaggggctaagaaaagaatgtcaaatcatgacctcgtgtaagagctagaacctgataacattcgcagtattttttcaaacacgatgacttcttacaattgcagcctcttttgtgacgagaagaagcaggagttttgttagagtcatcctataatatagcaaggattatatgagcagtagcacgtaacaaaggagaaaggaagtaaaacaaagagagtggctcttacagctaattcctgaccaggctcagtgcgaattactttaggagcaaatgcaagtggattacgagactcaatctgctctcgagtcgatagaactgtttccatgttgctaggcatattcagacagccttgacacgaacaaggttctgaacaaaagacaccagcatgaaaacactcacagtacctgcataagaattagccaacaatgacattatattagagatgatgcttgacagaacacatcccaacaagaagacagaacttctccagaaatatcttgtaaataacaaatgaaactcttcaaaggagcaatatggagattcagaaacatctaaaatggtttcttattttctaatgctaacttaataaaattgctagacggctagagaaccaagagaaacctgaacatgcagcaagtgcatgccctgcaggtccatgtcaacagtatagcagtctgtaattttgttcataagaaatggctatccagaagatcaaatttcatgtatcaatatcaggcctattgtactagtaatatcagcagaatggtccactgcaaactcaagtattgtgctttttagtatttaaccatgtctaggaaaacaagcaaaatgacatgttccacaggcataacatcagctttctgttttaggattgctcatgttgaattgtcctcatcatcatcaaatttgttgcacacatgtgaacgacagaaagacaatggtggggctcaacaacattaagaagaaaactgacaagcctagagagttatcactttccttttgcaacaatgctacagtagtgactgtgggtggtcccatttcccaactgcatgagtccaaaccagccacagggcattaaattatttttattggtttttcacttctgactatccattctcccatgcttaccagccatatcggtctattttagtttacaaatgatacccaactggaaatttgacagcttgtgcattgtgacaaaaaacttttctaaccatgtttctgaaacaaagattgtagtgccgtttcagaagctcctaaatttttcaattttttaatacaaagctacttgcaaaagcttcttttttggaggcaggacagaagaagttttaaaattaacatagctaactagattccatggagcagtacacagtcccaaaaactagcccagggcaatatgttgacatctacaagctcaggaatgtgtgacagttgaagaaatgatactgtagatatgactggaaaaggaagcctgaacactgtgcatcaacttgtcataaatcatatatgatcaaagcaattattttctattatgcactccacccaaaacttggagtgcctgatacaccatatatgtttatctcaccgccactacttcataaacaggaaaaaaacatggacgtgttcatcctaaacctcaagcactaataaacaattgatacctcagaccaaccaatatcttgacatgttttcactctgaattaacctggttggcttgttgcatattatgagaaacaattgagaaaagaaggtgtagaacaacttacagcttcaagcattttgacttcttacagctacaacgcttgcacgacgtgccatcaccattgtcgaacttgtgtctgcatagcattattgtgtttcatgatttgcccagcgaaatggttctcatgacctataataatgggcatagaaacaaagtaccttttcttcttgggactaccctgactcgattcaccaacatatgcaaccacggctgtctgggaggagtcatcatttatagtatgtggatcatctgttggtggagaagaaccaacagcagacggaacattgctggcttgattcaaagaggattgaatgtcattatggggaaccattttatcctttggcactgtggcaagggcattcaaatgcaagccaataccaggcaatgcacatggaggggtcctcagagtctttaagttgttatcactggaactaatcttgcgtctgggtgtggttgaatttgtagaatgacgagctgaggagttctttgccccttcattagcagctccactcttttcattgaaaaggcaacgtctacgcatgccacgtaaattctgtgatgacacctaccgaaacaagaaaacagattgtttgcttagtttattaccacgacccacaagaataaacattgatacttcaattcagattagcaatatataaacattgaaacttaggttatcaaattgagcgtgtcacaaagaaaaaaatgcatgaagagaagacctttgtttgccaaattgctggttaatttaattttcaagctcttaatatattgtttataaatgcactgctgcatttagttagacaaagaatttgctatgatttatcagcaaaaccaacaagtgaatatctccaattgggtagtagcaagaagaatacatacattgtggtccattggcatgtaatcactgggctcgttgagcttgttattgatttgatcatttggcaccaactggctttgacaagcaccagggagcatttggggggtataatctgttgcacacccttcaactgccccagcccagtaaagatgaggatcaggtgcagaattttgtgtgtaagagccacttggcccatcggtcaacaaggtttcacagtagacattatctgtttgtaatgtctcattcactaactgtgtttctgactcaaatggtggagctaatctcagcatatcactatgtggttgatgtgcaaacatgtaacccccatcaaatgacccaagttcatccttgtgttgttcagacagttggttttcacaagcattattacctgactgtgatgaatccattttttctggtccacactgatcaagtaggacgaattctatgtctgtacggtcttgctctgtagtgggatcctttttaccatcagtattttgattcgtatcactttctgcactgccgccacaaagctggatgggttgagatgctttacttgaagttgaatcatttaggtaacaagttatactgcaattttctgaaacaatgtttttgcatctgatcattctaataatagagcttgtggcccctgttcgagttctgacactgttcggagagtgcgattctcgagaaagttgaacagaatcttccctggttaatatggagatacatgtagatatagtaagctaaagcctaaaaggatgaaattacattcaactagaaaatagcataaatttacctgattggaagtttagattcctttgcaggattgacatgtggtgaggcaaagattgaggaaacaggagccaagtctgatgacttgaatagttgaacattatgtgctgagtctgaaggcttaggtggtggtataggagataggctgttgatgaaattgaagacaggagagtcctgcaggcacaaaaaacgaattagagagtagattgcaaggtttttcatttgacaacaattaaaatggaaggtcttcatttcataatagcttcacgcgtataaaagttagcttaaagtaataaggcattctgtgaaatactaatccaaacgtaatgcgcggttttcgattagttatggatagcccaaagcaatcaaagcctcctgcttccgcaagcaaatacatgatttcccatatcttcttgtagttaaagtcatccccagatagtcatcagaaacagtttactgttggttgttaaggccctctttgtttaggcttaggcttattggcttatatgatttataagccggtggataatgtcctaagtttagtggtggtgtcatacatctagctcacataagccaaaaaaatgtttctccaacctagcttttggcttaacagttagtgccttatggcttcaaaaaagccaaacgaaaaggctgcttgtttgtttaggctgactttttgacttataagttggcttataagcctaaacaaaagggcctaagtactttgaacagcttagatcaaatagttgttagatcaaatagttgttcagtctagccaggtcaaagttcagaagcgttccagaaaaaacaggaagtgcaagacacgacaaaaaaaaaaccagatcctaactagcacaaggattcttccatgatcaagtagaatgcccaatggagctcctcagctgaaccagaatcgatcaaatcagcgagcattgcattaagccacagatctaagcaatggttccctaaacacaaatcatccattttctcgacatttgacatggacaactgaaccaaatcgaaccacactgctgtgagccacggatctattgcacttagttcccccaactaaaacagcccatctctcttaccagagcgctctgataggaaacggaatggatattcagacaagcaaacctgaatcgagacttctagcacgattaggccccaatccggagcggcgaatggccgcaacatctagggagatcatgttgattagacacggaatcaaaccccacaacatctcctcctacaaaacccccttccatccctcaaatccagcaccgcgttaagctcaacaatggatgagcaaaaacccctaatccccccacccaacacacccgcttaatccccccaccaatgaactggacgagcgaatccaaccccccaaaaaaaacaaaaatcagaagtaaaaataaataaataaaaaacaaataaaccgaagccccaaatcggctccccccgcagccgccgccgccgccccctaacccgaaacccctcctaaaatcgacccccaaaaaaaaaagtccactcgacgagcgagccccagcatcccggacctcgacggccgcggtggcggcggcgcgggggggcctatccggcgtgtccatctccggcggcggcggcggcggccacgcgggggatctcccgcatccgcctccgcctcctcctcggctgcggctgctggcgagtgaggagtaggaggaggaggagtgcgctgctgctgctgatgctgatgctgctccactagtggttttactgggcctttgccctgacacgaggcgaggaggctgctcttccggtttcttctcttcttctctcttgttat
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| CDS seq | atggacacgccggataggcccccccgcgccgccgccaccgcggccgtcgaggactctcctgtcttcaatttcatcaacagcctatctcctataccaccacctaagccttcagactcagcacataatgttcaactattcaagtcatcagacttggctcctgtttcctcaatctttgcctcaccacatgtcaatcctgcaaaggaatctaaacttccaatcagggaagattctgttcaactttctcgagaatcgcactctccgaacagtgtcagaactcgaacaggggccacaagctctattattagaatgatcagatgcaaaaacattgtttcagaaaattgcagtataacttgttacctaaatgattcaacttcaagtaaagcatctcaacccatccagctttgtggcggcagtgcagaaagtgatacgaatcaaaatactgatggtaaaaaggatcccactacagagcaagaccgtacagacatagaattcgtcctacttgatcagtgtggaccagaaaaaatggattcatcacagtcaggtaataatgcttgtgaaaaccaactgtctgaacaacacaaggatgaacttgggtcatttgatgggggttacatgtttgcacatcaaccacatagtgatatgctgagattagctccaccatttgagtcagaaacacagttagtgaatgagacattacaaacagataatgtctactgtgaaaccttgttgaccgatgggccaagtggctcttacacacaaaattctgcacctgatcctcatctttactgggctggggcagttgaagggtgtgcaacagattataccccccaaatgctccctggtgcttgtcaaagccagttggtgccaaatgatcaaatcaataacaagctcaacgagcccagtgattacatgccaatggaccacaatgtgtcatcacagaatttacgtggcatgcgtagacgttgccttttcaatgaaaagagtggagctgctaatgaaggggcaaagaactcctcagctcgtcattctacaaattcaaccacacccagacgcaagattagttccagtgataacaacttaaagactctgaggacccctccatgtgcattgcctggtattggcttgcatttgaatgcccttgccacagtgccaaaggataaaatggttccccataatgacattcaatcctctttgaatcaagccagcaatgttccgtctgctgttggttcttctccaccaacagatgatccacatactataaatgatgactcctcccagacagccgtggttgcatatgttggtgaatcgagtcagggtagtcccaagaagaaaagacacaagttcgacaatggtgatggcacgtcgtgcaagcgttgtagctgtaagaagtcaaaatgcttgaagctgtactgtgagtgttttcatgctggtgtcttttgttcagaaccttgttcgtgtcaaggctgtctgaatatgcctagcaacatggaaacagttctatcgactcgagagcagattgagtctcgtaatccacttgcatttgctcctaaagtaattcgcactgagcctggtcaggaattagctgatgactctaacaaaactcctgcttcttctcgtcacaaaagaggctgcaattgtaagaagtcatcgtgtttgaaaaaatactgcgaatgttatcagggtggtgttggatgctctgtgagttgccgatgtgagggttgtaagaatgcttttgggaggagggagggagttgcactgttaggcatagaggaagctaagcgtggatgcgaagaaaaggatggaggcgtgaaggaagaaaccactgataatgataagcagcttgttatctatcaagatagtatcaaccttactcctgctgagagtgtgctggcaacaccttcagttgtggattacagacccttggttgctcttccacctttgagctccaagaagccaagatcgtcgacgaagcttggtggatattcttctcgacttgaaggacacctgaagtctgacattctactctctccattcgaaagctacgcagaaatgatgctcggggatggtacatcaaatgtcctaaaaggggaatcatcccctcaaacttctgtcaaggtcgtgtcacctaataaaaagagggtctctccccctcgcattggtaccggattgtctccgatctgcaagagtggcaggaagttgattctcaagtccatcccttcattcccttctcttggtgtcgacattactaacgaggatccaaacactagttcgctagctccttga
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| Protein seq | MDTPDRPPRAAATAAVEDSPVFNFINSLSPIPPPKPSDSAHNVQLFKSSDLAPVSSIFASPHVNPAKESKLPIREDSVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLCGGSAESDTNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQSGNNACENQLSEQHKDELGSFDGGYMFAHQPHSDMLRLAPPFESETQLVNETLQTDNVYCETLLTDGPSGSYTQNSAPDPHLYWAGAVEGCATDYTPQMLPGACQSQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQASNVPSAVGSSPPTDDPHTINDDSSQTAVVAYVGESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATPSVVDYRPLVALPPLSSKKPRSSTKLGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICKSGRKLILKSIPSFPSLGVDITNEDPNTSSLAP |
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| Function | CRC domain-containing protein TSO1 [UniProtKB/Swiss-Prot:Q9LUI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0020130 | OsKeNa_12g0020130.04 | Chr12 | 24683376 | 24690214 | - | NAM | ||
| CDS seq | atggacacgccggataggcccccccgcgccgccgccaccgcggccgtcgaggactctcctgtcttcaatttcatcaacagcctatctcctataccaccacctaagccttcagactcagcacataatgttcaactattcaagtcatcagacttggctcctgtttcctcaatctttgcctcaccacatgtcaatcctgcaaaggaatctaaacttccaatcagggaagattctgttcaactttctcgagaatcgcactctccgaacagtgtcagaactcgaacaggggccacaagctctattattagaatgatcagatgcaaaaacattgtttcagaaaattgcagtataacttgttacctaaatgattcaacttcaagtaaagcatctcaacccatccagctttgtggcggcagtgcagaaagtgatacgaatcaaaatactgatggtaaaaaggatcccactacagagcaagaccgtacagacatagaattcgtcctacttgatcagtgtggaccagaaaaaatggattcatcacagtcaggtaataatgcttgtgaaaaccaactgtctgaacaacacaaggatgaacttgggtcatttgatgggggttacatgtttgcacatcaaccacatagtgatatgctgagattagctccaccatttgagtcagaaacacagttagtgaatgagacattacaaacagataatgtctactgtgaaaccttgttgaccgatgggccaagtggctcttacacacaaaattctgcacctgatcctcatctttactgggctggggcagttgaagggtgtgcaacagattataccccccaaatgctccctggtgcttgtcaaagccagttggtgccaaatgatcaaatcaataacaagctcaacgagcccagtgattacatgccaatggaccacaatgtgtcatcacagaatttacgtggcatgcgtagacgttgccttttcaatgaaaagagtggagctgctaatgaaggggcaaagaactcctcagctcgtcattctacaaattcaaccacacccagacgcaagattagttccagtgataacaacttaaagactctgaggacccctccatgtgcattgcctggtattggcttgcatttgaatgcccttgccacagtgccaaaggataaaatggttccccataatgacattcaatcctctttgaatcaagccagcaatgttccgtctgctgttggttcttctccaccaacagatgatccacatactataaatgatgactcctcccagacagccgtggttgcatatgttggtgaatcgagtcagggtagtcccaagaagaaaagacacaagttcgacaatggtgatggcacgtcgtgcaagcgttgtagctgtaagaagtcaaaatgcttgaagctgtactgtgagtgttttcatgctggtgtcttttgttcagaaccttgttcgtgtcaaggctgtctgaatatgcctagcaacatggaaacagttctatcgactcgagagcagattgagtctcgtaatccacttgcatttgctcctaaagtaattcgcactgagcctggtcaggaattagctggtggtgttggatgctctgtgagttgccgatgtgagggttgtaagaatgcttttgggaggagggagggagttgcactgttaggcatagaggaagctaagcgtggatgcgaagaaaaggatggaggcgtgaaggaagaaaccactgataatgataagcagcttgttatctatcaagatagtatcaaccttactcctgctgagagtgtgctggcaacaccttcagttgtggattacagacccttggttgctcttccacctttgagctccaagaagccaagatcgtcgacgaagcttggtggatattcttctcgacttgaaggacacctgaagtctgacattctactctctccattcgaaagctacgcagaaatgatgctcggggatggtacatcaaatgtcctaaaaggggaatcatcccctcaaacttctgtcaaggtcgtgtcacctaataaaaagagggtctctccccctcgcattggtaccggattgtctccgatctgcaagagtggcaggaagttgattctcaagtccatcccttcattcccttctcttggtgtcgacattactaacgaggatccaaacactaaggaccagatcgccaacatctcagtctgcatcagggttggttctatcatgctctaa
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| Protein seq | MDTPDRPPRAAATAAVEDSPVFNFINSLSPIPPPKPSDSAHNVQLFKSSDLAPVSSIFASPHVNPAKESKLPIREDSVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLCGGSAESDTNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQSGNNACENQLSEQHKDELGSFDGGYMFAHQPHSDMLRLAPPFESETQLVNETLQTDNVYCETLLTDGPSGSYTQNSAPDPHLYWAGAVEGCATDYTPQMLPGACQSQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQASNVPSAVGSSPPTDDPHTINDDSSQTAVVAYVGESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELAGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATPSVVDYRPLVALPPLSSKKPRSSTKLGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICKSGRKLILKSIPSFPSLGVDITNEDPNTKDQIANISVCIRVGSIML
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0020130 | OsKeNa_12g0020130.01 | Chr12 | 24682913 | 24690214 | - | NAM | ||
| CDS seq | atggacacgccggataggcccccccgcgccgccgccaccgcggccgtcgaggactctcctgtcttcaatttcatcaacagcctatctcctataccaccacctaagccttcagactcagcacataatgttcaactattcaagtcatcagacttggctcctgtttcctcaatctttgcctcaccacatgtcaatcctgcaaaggaatctaaacttccaatcagggaagattctgttcaactttctcgagaatcgcactctccgaacagtgtcagaactcgaacaggggccacaagctctattattagaatgatcagatgcaaaaacattgtttcagaaaattgcagtataacttgttacctaaatgattcaacttcaagtaaagcatctcaacccatccagctttgtggcggcagtgcagaaagtgatacgaatcaaaatactgatggtaaaaaggatcccactacagagcaagaccgtacagacatagaattcgtcctacttgatcagtgtggaccagaaaaaatggattcatcacagtcaggtaataatgcttgtgaaaaccaactgtctgaacaacacaaggatgaacttgggtcatttgatgggggttacatgtttgcacatcaaccacatagtgatatgctgagattagctccaccatttgagtcagaaacacagttagtgaatgagacattacaaacagataatgtctactgtgaaaccttgttgaccgatgggccaagtggctcttacacacaaaattctgcacctgatcctcatctttactgggctggggcagttgaagggtgtgcaacagattataccccccaaatgctccctggtgcttgtcaaagccagttggtgccaaatgatcaaatcaataacaagctcaacgagcccagtgattacatgccaatggaccacaatgtgtcatcacagaatttacgtggcatgcgtagacgttgccttttcaatgaaaagagtggagctgctaatgaaggggcaaagaactcctcagctcgtcattctacaaattcaaccacacccagacgcaagattagttccagtgataacaacttaaagactctgaggacccctccatgtgcattgcctggtattggcttgcatttgaatgcccttgccacagtgccaaaggataaaatggttccccataatgacattcaatcctctttgaatcaagccagcaatgttccgtctgctgttggttcttctccaccaacagatgatccacatactataaatgatgactcctcccagacagccgtggttgcatatgttggtgaatcgagtcagggtagtcccaagaagaaaagacacaagttcgacaatggtgatggcacgtcgtgcaagcgttgtagctgtaagaagtcaaaatgcttgaagctgtactgtgagtgttttcatgctggtgtcttttgttcagaaccttgttcgtgtcaaggctgtctgaatatgcctagcaacatggaaacagttctatcgactcgagagcagattgagtctcgtaatccacttgcatttgctcctaaagtaattcgcactgagcctggtcaggaattagctgatgactctaacaaaactcctgcttcttctcgtcacaaaagaggctgcaattgtaagaagtcatcgtgtttgaaaaaatactgcgaatgttatcagggtggtgttggatgctctgtgagttgccgatgtgagggttgtaagaatgcttttgggaggagggagggagttgcactgttaggcatagaggaagctaagcgtggatgcgaagaaaaggatggaggcgtgaaggaagaaaccactgataatgataagcagcttgttatctatcaagatagtatcaaccttactcctgctgagagtgtgctggcaacaccttcagttgtggattacagacccttggttgctcttccacctttgagctccaagaagccaagatcgtcgacgaagcttggtggatattcttctcgacttgaaggacacctgaagtctgacattctactctctccattcgaaagctacgcagaaatgatgctcggggatggtacatcaaatgtcctaaaaggggaatcatcccctcaaacttctgtcaaggtcgtgtcacctaataaaaagagggtctctccccctcgcattggtaccggattgtctccgatctgcaagagtggcaggaagttgattctcaagtccatcccttcattcccttctcttggtgtcgacattactaacgaggatccaaacactagttcgctagctccttga
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| Protein seq | MDTPDRPPRAAATAAVEDSPVFNFINSLSPIPPPKPSDSAHNVQLFKSSDLAPVSSIFASPHVNPAKESKLPIREDSVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLCGGSAESDTNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQSGNNACENQLSEQHKDELGSFDGGYMFAHQPHSDMLRLAPPFESETQLVNETLQTDNVYCETLLTDGPSGSYTQNSAPDPHLYWAGAVEGCATDYTPQMLPGACQSQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQASNVPSAVGSSPPTDDPHTINDDSSQTAVVAYVGESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATPSVVDYRPLVALPPLSSKKPRSSTKLGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICKSGRKLILKSIPSFPSLGVDITNEDPNTSSLAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0020130 | OsKeNa_12g0020130.02 | Chr12 | 24682913 | 24690214 | - | NAM | ||
| CDS seq | atggacacgccggataggcccccccgcgccgccgccaccgcggccgtcgaggactctcctgtcttcaatttcatcaacagcctatctcctataccaccacctaagccttcagactcagcacataatgttcaactattcaagtcatcagacttggctcctgtttcctcaatctttgcctcaccacatgtcaatcctgcaaaggaatctaaacttccaatcagggaagattctgttcaactttctcgagaatcgcactctccgaacagtgtcagaactcgaacaggggccacaagctctattattagaatgatcagatgcaaaaacattgtttcagaaaattgcagtataacttgttacctaaatgattcaacttcaagtaaagcatctcaacccatccagctttgtggcggcagtgcagaaagtgatacgaatcaaaatactgatggtaaaaaggatcccactacagagcaagaccgtacagacatagaattcgtcctacttgatcagtgtggaccagaaaaaatggattcatcacagtcaggtaataatgcttgtgaaaaccaactgtctgaacaacacaaggatgaacttgggtcatttgatgggggttacatgtttgcacatcaaccacatagtgatatgctgagattagctccaccatttgagtcagaaacacagttagtgaatgagacattacaaacagataatgtctactgtgaaaccttgttgaccgatgggccaagtggctcttacacacaaaattctgcacctgatcctcatctttactgggctggggcagttgaagggtgtgcaacagattataccccccaaatgctccctggtgcttgtcaaagccagttggtgccaaatgatcaaatcaataacaagctcaacgagcccagtgattacatgccaatggaccacaatgtgtcatcacagaatttacgtggcatgcgtagacgttgccttttcaatgaaaagagtggagctgctaatgaaggggcaaagaactcctcagctcgtcattctacaaattcaaccacacccagacgcaagattagttccagtgataacaacttaaagactctgaggacccctccatgtgcattgcctggtattggcttgcatttgaatgcccttgccacagtgccaaaggataaaatggttccccataatgacattcaatcctctttgaatcaagccagcaatgttccgtctgctgttggttcttctccaccaacagatgatccacatactataaatgatgactcctcccagacagccgtggttgcatatgttggtgaatcgagtcagggtagtcccaagaagaaaagacacaagttcgacaatggtgatggcacgtcgtgcaagcgttgtagctgtaagaagtcaaaatgcttgaagctgtactgtgagtgttttcatgctggtgtcttttgttcagaaccttgttcgtgtcaaggctgtctgaatatgcctagcaacatggaaacagttctatcgactcgagagcagattgagtctcgtaatccacttgcatttgctcctaaagtaattcgcactgagcctggtcaggaattagctgatgactctaacaaaactcctgcttcttctcgtcacaaaagaggctgcaattgtaagaagtcatcgtgtttgaaaaaatactgcgaatgttatcagggtggtgttggatgctctgtgagttgccgatgtgagggttgtaagaatgcttttgggaggagggagggagttgcactgttaggcatagaggaagctaagcgtggatgcgaagaaaaggatggaggcgtgaaggaagaaaccactgataatgataagcagcttgttatctatcaagatagtatcaaccttactcctgctgagagtgtgctggcaacaccttcagttgtggattacagacccttggttgctcttccacctttgagctccaagaagccaagatcgtcgacgaagcttggtggatattcttctcgacttgaaggacacctgaagtctgacattctactctctccattcgaaagctacgcagaaatgatgctcggggatggtacatcaaatgtcctaaaaggggaatcatcccctcaaacttctgtcaaggtcgtgtcacctaataaaaagagggtctctccccctcgcattggtaccggattgtctccgatctgcaagagtggcaggaagttgattctcaagtccatcccttcattcccttctcttggtgtcgacattactaacgaggatccaaacactagttcgctagctccttga
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| Protein seq | MDTPDRPPRAAATAAVEDSPVFNFINSLSPIPPPKPSDSAHNVQLFKSSDLAPVSSIFASPHVNPAKESKLPIREDSVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLCGGSAESDTNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQSGNNACENQLSEQHKDELGSFDGGYMFAHQPHSDMLRLAPPFESETQLVNETLQTDNVYCETLLTDGPSGSYTQNSAPDPHLYWAGAVEGCATDYTPQMLPGACQSQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQASNVPSAVGSSPPTDDPHTINDDSSQTAVVAYVGESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATPSVVDYRPLVALPPLSSKKPRSSTKLGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICKSGRKLILKSIPSFPSLGVDITNEDPNTSSLAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0020130 | OsKeNa_12g0020130.03 | Chr12 | 24682913 | 24690214 | - | NAM | ||
| CDS seq | atggacacgccggataggcccccccgcgccgccgccaccgcggccgtcgaggactctcctgtcttcaatttcatcaacagcctatctcctataccaccacctaagccttcagactcagcacataatgttcaactattcaagtcatcagacttggctcctgtttcctcaatctttgcctcaccacatgtcaatcctgcaaaggaatctaaacttccaatcagggaagattctgttcaactttctcgagaatcgcactctccgaacagtgtcagaactcgaacaggggccacaagctctattattagaatgatcagatgcaaaaacattgtttcagaaaattgcagtataacttgttacctaaatgattcaacttcaagtaaagcatctcaacccatccagctttgtggcggcagtgcagaaagtgatacgaatcaaaatactgatggtaaaaaggatcccactacagagcaagaccgtacagacatagaattcgtcctacttgatcagtgtggaccagaaaaaatggattcatcacagtcaggtaataatgcttgtgaaaaccaactgtctgaacaacacaaggatgaacttgggtcatttgatgggggttacatgtttgcacatcaaccacatagtgatatgctgagattagctccaccatttgagtcagaaacacagttagtgaatgagacattacaaacagataatgtctactgtgaaaccttgttgaccgatgggccaagtggctcttacacacaaaattctgcacctgatcctcatctttactgggctggggcagttgaagggtgtgcaacagattataccccccaaatgctccctggtgcttgtcaaagccagttggtgccaaatgatcaaatcaataacaagctcaacgagcccagtgattacatgccaatggaccacaatgtgtcatcacagaatttacgtggcatgcgtagacgttgccttttcaatgaaaagagtggagctgctaatgaaggggcaaagaactcctcagctcgtcattctacaaattcaaccacacccagacgcaagattagttccagtgataacaacttaaagactctgaggacccctccatgtgcattgcctggtattggcttgcatttgaatgcccttgccacagtgccaaaggataaaatggttccccataatgacattcaatcctctttgaatcaagccagcaatgttccgtctgctgttggttcttctccaccaacagatgatccacatactataaatgatgactcctcccagacagccgtggttgcatatgttggtgaatcgagtcagggtagtcccaagaagaaaagacacaagttcgacaatggtgatggcacgtcgtgcaagcgttgtagctgtaagaagtcaaaatgcttgaagctgtactgtgagtgttttcatgctggtgtcttttgttcagaaccttgttcgtgtcaaggctgtctgaatatgcctagcaacatggaaacagttctatcgactcgagagcagattgagtctcgtaatccacttgcatttgctcctaaagtaattcgcactgagcctggtcaggaattagctgatgactctaacaaaactcctgcttcttctcgtcacaaaagaggctgcaattgtaagaagtcatcgtgtttgaaaaaatactgcgaatgttatcagggtggtgttggatgctctgtgagttgccgatgtgagggttgtaagaatgcttttgggaggagggagggagttgcactgttaggcatagaggaagctaagcgtggatgcgaagaaaaggatggaggcgtgaaggaagaaaccactgataatgataagcagcttgttatctatcaagatagtatcaaccttactcctgctgagagtgtgctggcaacaccttcagttgtggattacagacccttggttgctcttccacctttgagctccaagaagccaagatcgtcgacgaagcttggtggatattcttctcgacttgaaggacacctgaagtctgacattctactctctccattcgaaagctacgcagaaatgatgctcggggatggtacatcaaatgtcctaaaaggggaatcatcccctcaaacttctgtcaaggtcgtgtcacctaataaaaagagggtctctccccctcgcattggtaccggattgtctccgatctgcaagagtggcaggaagttgattctcaagtccatcccttcattcccttctcttggtgtcgacattactaacgaggatccaaacactagttcgctagctccttga
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| Protein seq | MDTPDRPPRAAATAAVEDSPVFNFINSLSPIPPPKPSDSAHNVQLFKSSDLAPVSSIFASPHVNPAKESKLPIREDSVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLCGGSAESDTNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQSGNNACENQLSEQHKDELGSFDGGYMFAHQPHSDMLRLAPPFESETQLVNETLQTDNVYCETLLTDGPSGSYTQNSAPDPHLYWAGAVEGCATDYTPQMLPGACQSQLVPNDQINNKLNEPSDYMPMDHNVSSQNLRGMRRRCLFNEKSGAANEGAKNSSARHSTNSTTPRRKISSSDNNLKTLRTPPCALPGIGLHLNALATVPKDKMVPHNDIQSSLNQASNVPSAVGSSPPTDDPHTINDDSSQTAVVAYVGESSQGSPKKKRHKFDNGDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPSNMETVLSTREQIESRNPLAFAPKVIRTEPGQELADDSNKTPASSRHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNAFGRREGVALLGIEEAKRGCEEKDGGVKEETTDNDKQLVIYQDSINLTPAESVLATPSVVDYRPLVALPPLSSKKPRSSTKLGGYSSRLEGHLKSDILLSPFESYAEMMLGDGTSNVLKGESSPQTSVKVVSPNKKRVSPPRIGTGLSPICKSGRKLILKSIPSFPSLGVDITNEDPNTSSLAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 24683462 | 24683565 | - | OsKeNa_12g0020130.01 | OsKeNa_12g0020130.01,OsKeNa_12g0020130.02 | All |
| RI | Chr12 | 24682913 | 24683955 | - | OsKeNa_12g0020130.03 | OsKeNa_12g0020130.03,OsKeNa_12g0020130.01 | All |
| RI | Chr12 | 24682913 | 24683955 | - | OsKeNa_12g0020130.03 | OsKeNa_12g0020130.03,OsKeNa_12g0020130.02 | All |
| SE | Chr12 | 24684911 | 24685179 | - | OsKeNa_12g0020130.01,OsKeNa_12g0020130.02,OsKeNa_12g0020130.03 | OsKeNa_12g0020130.04,OsKeNa_12g0020130.03,OsKeNa_12g0020130.01,OsKeNa_12g0020130.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.505918 | 2.753450 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0605500 | RBH | 0.160619 | 0.158709 | 2.746260 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41230 | RBH | 0.103764 | 0.105357 | 0.685695 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0605500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020030 | RBH | 0.0 | 19.984631 | 3.255469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020450 | RBH | 5.062156 | 94.553566 | 37.724693 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019770 | RBH | 0.067341 | 1.045965 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019350 | RBH | 0.329504 | 38.627224 | 11.545323 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0341600 | SBH | 4.787423 | 13.0458575 | 13.58215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019230 | RBH | 0.000000 | 1.235325 | 0.611812 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0372300 | SBH | 1.9602825 | 2.0553815 | 5.849438 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019480 | RBH | 0.0 | 0.645803 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019700 | RBH | 0.284255 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019620 | RBH | 0.0 | 40.189411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019680 | RBH | 0.151432 | 0.0 | 0.957262 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019840 | RBH | 0.0 | 16.440197 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019490 | RBH | 0.0 | 7.525427 | 1.097969 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019180 | RBH | 4.201724 | 63.112083 | 21.555706 |
