Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0016720 | OGI:12024450 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:21259778-21262198 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgcgctccatttgttcgtgtttgccgccatcatctgccctctagcggtgctctacatgtttgggctgatcatcaccactgccatatccgtgtgccgtctgatacagcatgactacgggggtgaggtcaacaatggcggcgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctcccagggtgtgctcttctgttaccggttcacattgtgctatgagcagaaaaggctggtggatttggtggttaacaaatatcgctttgttgctagtttgagcgagtcagtgatggcgtacatgcgagagacgatgatcgggtgtgagaaggacccgtcattcgtcaaaggaaggaacctggtcacctatgctgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgcccatgtacaagtacaatttctttctcgaggttgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtacgagggcagacaacgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcatgctagccaagatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcgtggtacagaacagtgcgtgcttcgatggttgtgattctctggctcgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagcatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatttacacacgaatgcacgagcacacgctttctaacatcgcgacgacgagggagtatttcattgagaaattgctgctcatcttcacccaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccacgcaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtatagtctgtttgaggcaagaaaagaaacacttgctttatttttttatcagcatcatatatagggtgataattagtcttctgttggatcgttacgcttgtcatactgaagataaacataatgttgcaggtgcttgtgagaacacttcgtgtcgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggacgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacacattgaagcttatcactgagatattcatactaatcgttaggcatggaagccgctacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggatgtagtagcagcctaaagactcttggttcccttgtgaaagaagccgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagattaatgaaatcgtatataatctgtattattttaatccgtaccctcattggaagactgtgtgccggggaaatctgatagtcgatctgaaaaccgaaattaaaaattactcgtgcctgccagtaataaaatcaaagtgaaaatcggcctttaatcagctgaggccaatgcatagtattttttttcttacacttttgtacattccattttgctgctcttctcttctttttttctactctttcccaatcatgtaacaatgtaacttatcatttctatcaatgaaatggctgtaaggtagagctggctctacgttcttatgttt
More
|
||||||||||
| CDS seq | atggctgcgctccatttgttcgtgtttgccgccatcatctgccctctagcggtgctctacatgtttgggctgatcatcaccactgccatatccgtgtgccgtctgatacagcatgactacgggggtgaggtcaacaatggcggcgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctcccagggtgtgctcttctgttaccgaaaaggctggtggatttggtggttaacaaatatcgctttgttgctagtttgagcgagtcagtgatggcgtacatgcgagagacgatgatcgggtgtgagaaggacccgtcattcgtcaaaggaaggaacctggtcacctatgctgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgcccatgtacaagtacaatttctttctcgaggttgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtacgagggcagacaacgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcatgctagccaagatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcgtggtacagaacagtgcgtgcttcgatggttgtgattctctggctcgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagcatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatttacacacgaatgcacgagcacacgctttctaacatcgcgacgacgagggagtatttcattgagaaattgctgctcatcttcacccaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccacgcaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtgcttgtgagaacacttcgtgtcgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggacgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacacattgaagcttatcactgagatattcatactaatcgttaggcatggaagccgctacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggatgtagtagcagcctaaagactcttggttcccttgtgaaagaagccgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagattaatgaaatcgtatataatctgtattattttaatccgtaccctcattggaagactgtgtgccggggaaatctgatagtcgatctgaaaaccgaaattaaaaattactcgtgcctgccagtaataaaatcaaagtga
More
|
||||||||||
| Protein seq | MAALHLFVFAAIICPLAVLYMFGLIITTAISVCRLIQHDYGGEVNNGGANLKSALKFVYSIALLPGCALLLPKRLVDLVVNKYRFVASLSESVMAYMRETMIGCEKDPSFVKGRNLVTYAVGLTKSGSPDDFLSGVRILDSLLNTPMYKYNFFLEVEVEVEEQKAMVKQLLLSASYSQDGGLHTLLQSLDCTRADNAEARERAARIVAHLAGDLHLEQFPQGIHCIASLLEGPPKDYDGNIPVNYRELMLQGLSILMKLAAHEDCQRSINKTEGMLAKIMAPLRSGLLNHNDDPNSAWYRTVRASMVVILWLVDAPGQTGKELRRKISGDVEAMASMERILGCQGCGLGSFHDSSLFMQALDIYTRMHEHTLSNIATTREYFIEKLLLIFTHQVHKEANIIFGLAVVGEKLATLCSHGKANAKIILQVKDDVVGDLTKILVQDRYPKEYRISATQILEQLCVHHTDDDEYIQSLKEALKVKSPEVLVRTLRVESADRQMLAAVLSLIVTMTRNLMDAEDLPPLIDAINREANGFSILAELQSMVTKLSMKSKVTIVNRLNTLKLITEIFILIVRHGSRYTVEEAENLMKSLWKAARNMSEIEDIMVISGCSSSLKTLGSLVKEAEELLPRERASEMEVIIEHPSCVNRNQINEIVYNLYYFNPYPHWKTVCRGNLIVDLKTEIKNYSCLPVIKSK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0016720 | OsKeNa_12g0016720.01 | Chr12 | 21259778 | 21262198 | + | NAM | ||
| CDS seq | atggctgcgctccatttgttcgtgtttgccgccatcatctgccctctagcggtgctctacatgtttgggctgatcatcaccactgccatatccgtgtgccgtctgatacagcatgactacgggggtgaggtcaacaatggcggcgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctcccagggtgtgctcttctgttaccgaaaaggctggtggatttggtggttaacaaatatcgctttgttgctagtttgagcgagtcagtgatggcgtacatgcgagagacgatgatcgggtgtgagaaggacccgtcattcgtcaaaggaaggaacctggtcacctatgctgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgcccatgtacaagtacaatttctttctcgaggttgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtacgagggcagacaacgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcatgctagccaagatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcgtggtacagaacagtgcgtgcttcgatggttgtgattctctggctcgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagcatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatttacacacgaatgcacgagcacacgctttctaacatcgcgacgacgagggagtatttcattgagaaattgctgctcatcttcacccaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccacgcaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtgcttgtgagaacacttcgtgtcgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggacgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacacattgaagcttatcactgagatattcatactaatcgttaggcatggaagccgctacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggatgtagtagcagcctaaagactcttggttcccttgtgaaagaagccgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagattaatgaaatcgtatataatctgtattattttaatccgtaccctcattggaagactgtgtgccggggaaatctgatagtcgatctgaaaaccgaaattaaaaattactcgtgcctgccagtaataaaatcaaagtga
More
|
|||||||
| Protein seq | MAALHLFVFAAIICPLAVLYMFGLIITTAISVCRLIQHDYGGEVNNGGANLKSALKFVYSIALLPGCALLLPKRLVDLVVNKYRFVASLSESVMAYMRETMIGCEKDPSFVKGRNLVTYAVGLTKSGSPDDFLSGVRILDSLLNTPMYKYNFFLEVEVEVEEQKAMVKQLLLSASYSQDGGLHTLLQSLDCTRADNAEARERAARIVAHLAGDLHLEQFPQGIHCIASLLEGPPKDYDGNIPVNYRELMLQGLSILMKLAAHEDCQRSINKTEGMLAKIMAPLRSGLLNHNDDPNSAWYRTVRASMVVILWLVDAPGQTGKELRRKISGDVEAMASMERILGCQGCGLGSFHDSSLFMQALDIYTRMHEHTLSNIATTREYFIEKLLLIFTHQVHKEANIIFGLAVVGEKLATLCSHGKANAKIILQVKDDVVGDLTKILVQDRYPKEYRISATQILEQLCVHHTDDDEYIQSLKEALKVKSPEVLVRTLRVESADRQMLAAVLSLIVTMTRNLMDAEDLPPLIDAINREANGFSILAELQSMVTKLSMKSKVTIVNRLNTLKLITEIFILIVRHGSRYTVEEAENLMKSLWKAARNMSEIEDIMVISGCSSSLKTLGSLVKEAEELLPRERASEMEVIIEHPSCVNRNQINEIVYNLYYFNPYPHWKTVCRGNLIVDLKTEIKNYSCLPVIKSK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056593 | 0.000000 | 0.095107 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0548800 | SBH | 0.488204 | 0.761753 | 1.441346 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36270 | SBH | 0.321496 | 0.498914 | 0.361306 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0548800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016590 | RBH | 0.0 | 2.312010 | 0.156194 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017060 | RBH | 0.369171 | 0.000000 | 0.291674 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016390 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015920 | SBH | 2.115333 | 2.328450 | 6.751227 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0291600 | SBH | 1.9758985 | 6.5784985 | 3.04132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015910 | SBH | 0.065199 | 0.054042 | 0.172286 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0323600 | SBH | 2.601076 | 14.062813 | 6.824515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016130 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016300 | SBH | 2.380965 | 4.285388 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016290 | SBH | 0.289741 | 0.0 | 0.155232 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016540 | SBH | 0.119288 | 1.402565 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016470 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015030 | SBH | 0.439769 | 2.029420 | 1.837750 |
