Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0015100 | OGI:12052770 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:19425128-19428865 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taatatcaaatctttgatagggcgcacagcatgcatcaaaagttctgaaattcgagaacgccctcattcgtggattgttttcctcttcatggctaggatttttccctaaccccagcctgccaaataaggccactagagttaggaaccatcttctcttctaggggtgagatggaatattctcttgcctatcaaaacaaggagagaaaaaaaaggttattattgtaatggaaacctaactagaaatgagcaaggagaccggacatatcagggaagataactgttgaaacggaaatattcatacctaataacatgttagtttatatcaactttatggattggcaaaatcttctcccattcagaaccattggttttacaccccacctttaaacgagtgcaacaaccacttatttgaagagcccacagattggggggcatagcaggaagtgtctcgaggaggggagcattacacagaaccagactcctcagggagtgcaaagtgtccatagttgaaggcagtgatctgagcagatttgcattgtttatttctatatgctccaactgagaactattctgcaataaccattcctgaggcaactcaagcatttcagatccattagatacaagtcttctagtgaggcagaagtttctaaatggattctgaagaagcaaaagatggtcatcaatttcaagggtgtcaagcacaagagaagaccgcatagctggtgctaccggaatccctgaagatgtagcagttagatgagtgcactgctgtattttcagtattttcaaggaagcaagtgctcctaggccacccaaggtcgacaaactctgacattgaagaatttcaatactctccattgtggatattcttctaaaatgttcttcacttgggagcttctcgagcatgctgcagccgatgactttcaagctagtaagagctttgtagtgttgctcttctacaatacatgatccgaaggacaacaaattaggacaagaatctacatggagactgcacagctgtggatccactgtagacacgttttgtaatgccatctgactactggttggcagacaagatattccaactttatttatccccagatgctttagactataaggtagatgaggtaaattcaacagttctaggcattcttttacaactaaggtaaccaagaaaggaggcaatccatcaccatcaggtcccccaatgcatttcagatttggtaggtcctccagtaagacatgcttcagactagatagactcgcgaaggaagggagatcatcccatttaggacatccaacaatcttcaagcgtaccaatttggtaaggactttccttcgaatccacagtggaggcaaaacacccttataaccagaaattcttaaatgcctaatacgtttgtaaggaacaactgtatcaagaattcgctcattaatcctattatgttgatttgaccactccaaagataacagttccatatcattcttattgctcaattcagccaaggaagcttcactacagttgcttacattctcaacatcaaacacaaagactttccggaggttctttaagtccttcagctcagatattttgtgtccttcttctttcttcacgctcaacccattcaactcacgaagattagttagtcttccaatatgagggactctggataatgcaggttttggaagatacagtttctgcaagttagctagattgcataaatcactgacgctcgcctgttcttctccttctatcttcagtagcttaaggacctccaggtggaagagtttaaacaatttattcagattgcttttgttagtagcagacatacagatgtaccttaagtgctttagttccgcaatagcatcatttatgtcaaaccatccatgtccatcaaactttaagagccgcaagcttgttatgcccttcattgctttcttaagattatcagccagtcctgccttaagtggccattcctcattcgctataataagagtacggaggtacttggacttggatataacattgatagcttcagaatttatcccttcaatgtataggtgacgtactctttcagatacatcagcagtattgcatttggtgactttaaatgttgagaattcctcgctagaaacaaggcatgacaattcataaatcaaatcatgcatgacatagtaatctgtagaaggatcgggatgtaattctctgggtatcagtgaaaagaatgattttttcaacagaatattgaagtgttcccgagcaattttctcctggccactgttcccctttgtgctttgcagtatcaatcctgaactcacccacatctcggtaagctcttccatcctgaatttgtaatgggatggaaatatgctgcagtactgaaagcaaagctgcacctctgaggttagatcttcatagctcaacctgagcatctccataaccctaggtgcaatatcgtctaaatgacatacttttttatttaagaagtcattccaattgctatgatcagtgttgtctctgaggtactgaccaatcacttttgctacaaaaggacatccttcgaggttgtgtacaatccattcagctacacttcgaagttccaaatcttcattaggaggcacatgatggttcaagatctgcataatatctctgtgatctaaaccccccagtacaacacatttatattcatttgatggcatttggcgtttaacagcatcagccactgaccccattcgggtcgtgagcaagattctacctcccattggtgcaataatgttcctcaggggagataaaaattgcccccatagctcattttccccatcctcccatgcatcatccagaaccagtaaaaatctcttagtaaccaactctttagtgagatctaattgcagtatgtccaaagaagatgcagtaactctgttcctgttaatggattccaacattcttgccaccaacactacaggttcaaagcgcttgggaacatgcacccagataatcatgtcgccgaaatgatcctgaaccttcttatcttgacagacaagctgagcaagagatgttttccccataccacccccacccactattgcacacactgagagtttgctatctctccctggagcctcaacacccagccattcaattatctcatctttttccttctgccttccaaatacaggtgttgctaacactctcgttgtctcatttcggttggtcgtatcttgtatgcgcccttcattacgttgaggggaagtgtgaagtccatgcccagttaccactcggaaatttgcagcatcatcaaagacagattctaacctcatcagagcattcttgagattctttctactgctgttggagttattagaacttacagacagctgcaatctcatgaatttagggaccaaggatgatgaagattctgccttccgattgcacaccttctccaagtcaaagaagtcaagctcatcaagtgcatcctcggcctcctgtatggcatcgcggaactgccaaagccattcaaccaacccttggttgtcctggatctcctgcagagtaatgccatataacattgcttgagttttggagagcttactcttcaacttagtcttcaaatcctcattctccagcggaaggcgatcaagggctttgttcacaacataactgatcactgtctctgcaactttcttcccaacaaaaatggctgagctcttggcaaaagcaatagcagcagcttccaccat
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| CDS seq | atggtggaagctgctgctattgcttttgccaagagctcagccatttttgttgggaagaaagttgcagagacagtgatcagttatgttgtgaacaaagcccttgatcgccttccgctggagaatgaggatttgaagactaagttgaagagtaagctctccaaaactcaagcaatgttatatggcattactctgcaggagatccaggacaaccaagggttggttgaatggctttggcagttccgcgatgccatacaggaggccgaggatgcacttgatgagcttgacttctttgacttggagaaggtgtgcaatcggaaggcagaatcttcatcatccttggtccctaaattcatgagattgcagctgtctgtaagttctaataactccaacagcagtagaaagaatctcaagaatgctctgatgaggttagaatctgtctttgatgatgctgcaaatttccgagtggtaactgggcatggacttcacacttcccctcaacgtaatgaagggcgcatacaagatacgaccaaccgaaatgagacaacgagagtgttagcaacacctgtatttggaaggcagaaggaaaaagatgagataattgaatggctgggtgttgaggctccagggagagatagcaaactctcagtgtgtgcaatagtgggtgggggtggtatggggaaaacatctcttgctcagcttgtctgtcaagataagaaggttcaggatcatttcggcgacatgattatctgggtgcatgttcccaagcgctttgaacctgtagtgttggtggcaagaatgttggaatccattaacaggaacagagttactgcatcttctttggacatactgcaattagatctcactaaagagttggttactaagagatttttactggttctggatgatgcatgggaggatggggaaaatgagctatgggggcaatttttatctcccctgaggaacattattgcaccaatgggaggtagaatcttgctcacgacccgaatggggtcagtggctgatgctgttaaacgccaaatgccatcaaatgaatataaatgtgttgtactggggggtttagatcacagagatattatgcagatcttgaaccatcatgtgcctcctaatgaagatttggaacttcgaagtgtagctgaatggattgtacacaacctcgaaggatgtccttttgtagcaaaagtgattggtcagtacctcagagacaacactgatcatagcaattggaatgacttcttaaataaaaaagtatgtcatttagacgatattgcacctagggttatggagatgctcaggttgagctatgaagatctaacctcagaggtgcagctttgctttcagtactgcagcatatttccatcccattacaaattcaggatggaagagcttaccgagatgtgggtgagttcaggattgatactgcaaagcacaaaggggaacagtggccaggagaaaattgctcgggaacacttcaatattctgttgaaaaaatcattcttttcactgatacccagagaattacatcccgatccttctacagattactatgtcatgcatgatttgatttatgaattgtcatgccttgtttctagcgaggaattctcaacatttaaagtcaccaaatgcaatactgctgatgtatctgaaagagtacgtcacctatacattgaagggataaattctgaagctatcaatgttatatccaagtccaagtacctccgtactcttattatagcgaatgaggaatggccacttaaggcaggactggctgataatcttaagaaagcaatgaagggcataacaagcttgcggctcttaaagtttgatggacatggatggtttgacataaatgatgctattgcggaactaaagcacttaaggtacatctgtatgtctgctactaacaaaagcaatctgaataaattgtttaaactcttccacctggaggtccttaagctactgaagatagaaggagaagaacaggcgagcgtcagtgatttatgcaatctagctaacttgcagaaactgtatcttccaaaacctgcattatccagagtccctcatattggaagactaactaatcttcgtgagttgaatgggttgagcattgttggatgtcctaaatgggatgatctcccttccttcgcgagtctatctagtctgaagcatgtcttactggaggacctaccaaatctgaaatgcattgggggacctgatggtgatggattgcctcctttcttggttaccttagttgtaaaagaatgcctagaactgttgaatttacctcatctaccttatagtctaaagcatctggggataaataaagttggaatatcttgtctgccaaccagtagtcagatggcattacaaaacgtgtctacagtggatccacagctgtgcagtctccatgtagattcttgtcctaatttgttgtccttcggatcatgtattgtagaagagcaacactacaaagctcttactagcttgaaagtcatcggctgcagcatgctcgagaagctcccaagtgaagaacattttagaagaatatccacaatggagagtattgaaattcttcaatgtcagagtttgtcgaccttgggtggcctaggagcacttgcttccttgaaaatactgaaaatacagcagtgcactcatctaactgctacatcttcagggattccggtagcaccagctatgcggtcttctcttgtgcttgacacccttgaaattgatgaccatcttttgcttcttcagaatccatttagaaacttctgcctcactagaagacttgtatctaatggatctgaaatgcttgagttgcctcaggaatggttattgcagaatagttctcagttggagcatatagaaataaacaatgcaaatctgctcagatcactgccttcaactatggacactttgcactccctgaggagtctggttctgtgtaatgctcccctcctcgagacacttcctgctatgccccccaatctgtgggctcttcaaataagtggttgttgcactcgtttaaaggtggggtgtaaaaccaatggttctgaatgggagaagattttgccaatccataaagttgatataaactaa
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| Protein seq | MVEAAAIAFAKSSAIFVGKKVAETVISYVVNKALDRLPLENEDLKTKLKSKLSKTQAMLYGITLQEIQDNQGLVEWLWQFRDAIQEAEDALDELDFFDLEKVCNRKAESSSSLVPKFMRLQLSVSSNNSNSSRKNLKNALMRLESVFDDAANFRVVTGHGLHTSPQRNEGRIQDTTNRNETTRVLATPVFGRQKEKDEIIEWLGVEAPGRDSKLSVCAIVGGGGMGKTSLAQLVCQDKKVQDHFGDMIIWVHVPKRFEPVVLVARMLESINRNRVTASSLDILQLDLTKELVTKRFLLVLDDAWEDGENELWGQFLSPLRNIIAPMGGRILLTTRMGSVADAVKRQMPSNEYKCVVLGGLDHRDIMQILNHHVPPNEDLELRSVAEWIVHNLEGCPFVAKVIGQYLRDNTDHSNWNDFLNKKVCHLDDIAPRVMEMLRLSYEDLTSEVQLCFQYCSIFPSHYKFRMEELTEMWVSSGLILQSTKGNSGQEKIAREHFNILLKKSFFSLIPRELHPDPSTDYYVMHDLIYELSCLVSSEEFSTFKVTKCNTADVSERVRHLYIEGINSEAINVISKSKYLRTLIIANEEWPLKAGLADNLKKAMKGITSLRLLKFDGHGWFDINDAIAELKHLRYICMSATNKSNLNKLFKLFHLEVLKLLKIEGEEQASVSDLCNLANLQKLYLPKPALSRVPHIGRLTNLRELNGLSIVGCPKWDDLPSFASLSSLKHVLLEDLPNLKCIGGPDGDGLPPFLVTLVVKECLELLNLPHLPYSLKHLGINKVGISCLPTSSQMALQNVSTVDPQLCSLHVDSCPNLLSFGSCIVEEQHYKALTSLKVIGCSMLEKLPSEEHFRRISTMESIEILQCQSLSTLGGLGALASLKILKIQQCTHLTATSSGIPVAPAMRSSLVLDTLEIDDHLLLLQNPFRNFCLTRRLVSNGSEMLELPQEWLLQNSSQLEHIEINNANLLRSLPSTMDTLHSLRSLVLCNAPLLETLPAMPPNLWALQISGCCTRLKVGCKTNGSEWEKILPIHKVDIN |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0015100 | OsKeNa_12g0015100.01 | Chr12 | 19425128 | 19428865 | - | NAM | ||
| CDS seq | atggtggaagctgctgctattgcttttgccaagagctcagccatttttgttgggaagaaagttgcagagacagtgatcagttatgttgtgaacaaagcccttgatcgccttccgctggagaatgaggatttgaagactaagttgaagagtaagctctccaaaactcaagcaatgttatatggcattactctgcaggagatccaggacaaccaagggttggttgaatggctttggcagttccgcgatgccatacaggaggccgaggatgcacttgatgagcttgacttctttgacttggagaaggtgtgcaatcggaaggcagaatcttcatcatccttggtccctaaattcatgagattgcagctgtctgtaagttctaataactccaacagcagtagaaagaatctcaagaatgctctgatgaggttagaatctgtctttgatgatgctgcaaatttccgagtggtaactgggcatggacttcacacttcccctcaacgtaatgaagggcgcatacaagatacgaccaaccgaaatgagacaacgagagtgttagcaacacctgtatttggaaggcagaaggaaaaagatgagataattgaatggctgggtgttgaggctccagggagagatagcaaactctcagtgtgtgcaatagtgggtgggggtggtatggggaaaacatctcttgctcagcttgtctgtcaagataagaaggttcaggatcatttcggcgacatgattatctgggtgcatgttcccaagcgctttgaacctgtagtgttggtggcaagaatgttggaatccattaacaggaacagagttactgcatcttctttggacatactgcaattagatctcactaaagagttggttactaagagatttttactggttctggatgatgcatgggaggatggggaaaatgagctatgggggcaatttttatctcccctgaggaacattattgcaccaatgggaggtagaatcttgctcacgacccgaatggggtcagtggctgatgctgttaaacgccaaatgccatcaaatgaatataaatgtgttgtactggggggtttagatcacagagatattatgcagatcttgaaccatcatgtgcctcctaatgaagatttggaacttcgaagtgtagctgaatggattgtacacaacctcgaaggatgtccttttgtagcaaaagtgattggtcagtacctcagagacaacactgatcatagcaattggaatgacttcttaaataaaaaagtatgtcatttagacgatattgcacctagggttatggagatgctcaggttgagctatgaagatctaacctcagaggtgcagctttgctttcagtactgcagcatatttccatcccattacaaattcaggatggaagagcttaccgagatgtgggtgagttcaggattgatactgcaaagcacaaaggggaacagtggccaggagaaaattgctcgggaacacttcaatattctgttgaaaaaatcattcttttcactgatacccagagaattacatcccgatccttctacagattactatgtcatgcatgatttgatttatgaattgtcatgccttgtttctagcgaggaattctcaacatttaaagtcaccaaatgcaatactgctgatgtatctgaaagagtacgtcacctatacattgaagggataaattctgaagctatcaatgttatatccaagtccaagtacctccgtactcttattatagcgaatgaggaatggccacttaaggcaggactggctgataatcttaagaaagcaatgaagggcataacaagcttgcggctcttaaagtttgatggacatggatggtttgacataaatgatgctattgcggaactaaagcacttaaggtacatctgtatgtctgctactaacaaaagcaatctgaataaattgtttaaactcttccacctggaggtccttaagctactgaagatagaaggagaagaacaggcgagcgtcagtgatttatgcaatctagctaacttgcagaaactgtatcttccaaaacctgcattatccagagtccctcatattggaagactaactaatcttcgtgagttgaatgggttgagcattgttggatgtcctaaatgggatgatctcccttccttcgcgagtctatctagtctgaagcatgtcttactggaggacctaccaaatctgaaatgcattgggggacctgatggtgatggattgcctcctttcttggttaccttagttgtaaaagaatgcctagaactgttgaatttacctcatctaccttatagtctaaagcatctggggataaataaagttggaatatcttgtctgccaaccagtagtcagatggcattacaaaacgtgtctacagtggatccacagctgtgcagtctccatgtagattcttgtcctaatttgttgtccttcggatcatgtattgtagaagagcaacactacaaagctcttactagcttgaaagtcatcggctgcagcatgctcgagaagctcccaagtgaagaacattttagaagaatatccacaatggagagtattgaaattcttcaatgtcagagtttgtcgaccttgggtggcctaggagcacttgcttccttgaaaatactgaaaatacagcagtgcactcatctaactgctacatcttcagggattccggtagcaccagctatgcggtcttctcttgtgcttgacacccttgaaattgatgaccatcttttgcttcttcagaatccatttagaaacttctgcctcactagaagacttgtatctaatggatctgaaatgcttgagttgcctcaggaatggttattgcagaatagttctcagttggagcatatagaaataaacaatgcaaatctgctcagatcactgccttcaactatggacactttgcactccctgaggagtctggttctgtgtaatgctcccctcctcgagacacttcctgctatgccccccaatctgtgggctcttcaaataagtggttgttgcactcgtttaaaggtggggtgtaaaaccaatggttctgaatgggagaagattttgccaatccataaagttgatataaactaa
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| Protein seq | MVEAAAIAFAKSSAIFVGKKVAETVISYVVNKALDRLPLENEDLKTKLKSKLSKTQAMLYGITLQEIQDNQGLVEWLWQFRDAIQEAEDALDELDFFDLEKVCNRKAESSSSLVPKFMRLQLSVSSNNSNSSRKNLKNALMRLESVFDDAANFRVVTGHGLHTSPQRNEGRIQDTTNRNETTRVLATPVFGRQKEKDEIIEWLGVEAPGRDSKLSVCAIVGGGGMGKTSLAQLVCQDKKVQDHFGDMIIWVHVPKRFEPVVLVARMLESINRNRVTASSLDILQLDLTKELVTKRFLLVLDDAWEDGENELWGQFLSPLRNIIAPMGGRILLTTRMGSVADAVKRQMPSNEYKCVVLGGLDHRDIMQILNHHVPPNEDLELRSVAEWIVHNLEGCPFVAKVIGQYLRDNTDHSNWNDFLNKKVCHLDDIAPRVMEMLRLSYEDLTSEVQLCFQYCSIFPSHYKFRMEELTEMWVSSGLILQSTKGNSGQEKIAREHFNILLKKSFFSLIPRELHPDPSTDYYVMHDLIYELSCLVSSEEFSTFKVTKCNTADVSERVRHLYIEGINSEAINVISKSKYLRTLIIANEEWPLKAGLADNLKKAMKGITSLRLLKFDGHGWFDINDAIAELKHLRYICMSATNKSNLNKLFKLFHLEVLKLLKIEGEEQASVSDLCNLANLQKLYLPKPALSRVPHIGRLTNLRELNGLSIVGCPKWDDLPSFASLSSLKHVLLEDLPNLKCIGGPDGDGLPPFLVTLVVKECLELLNLPHLPYSLKHLGINKVGISCLPTSSQMALQNVSTVDPQLCSLHVDSCPNLLSFGSCIVEEQHYKALTSLKVIGCSMLEKLPSEEHFRRISTMESIEILQCQSLSTLGGLGALASLKILKIQQCTHLTATSSGIPVAPAMRSSLVLDTLEIDDHLLLLQNPFRNFCLTRRLVSNGSEMLELPQEWLLQNSSQLEHIEINNANLLRSLPSTMDTLHSLRSLVLCNAPLLETLPAMPPNLWALQISGCCTRLKVGCKTNGSEWEKILPIHKVDIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.119010 | 0.133415 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0512400 | SBH | 0.000000 | 0.000000 | 0.165617 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32790 | RBH | 0.000000 | 0.000000 | 0.042610 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0512400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014990 | SBH | 0.0 | 8.213895 | 0.534377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015130 | RBH | 0.071465 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015030 | SBH | 0.0 | 6.478322 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014810 | RBH | 0.0 | 0.113872 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014330 | SBH | 1.816516 | 3.163459 | 3.415550 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0265000 | SBH | 0.7852 | 15.0217285 | 0.987307 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014540 | SBH | 0.075205 | 0.238336 | 0.238006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294700 | SBH | 0.738621 | 13.4305935 | 3.6193225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014710 | SBH | 0.0 | 0.133747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014900 | SBH | 0.150412 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014860 | SBH | 0.648247 | 5.926068 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014750 | RBH | 0.111274 | 0.0 | 0.175978 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014920 | SBH | 0.000000 | 3.252288 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014820 | SBH | 0.0 | 0.000000 | 0.439404 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014600 | SBH | 0.000000 | 1.087796 | 0.067310 |
