Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_12g0008500 OGI:12023000 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr12:8162468-8168461
Gene Symbol -
DNA seq

tcagaggtctgttgcctcgtcgaggatgcagcaagcgacgacagcaacaaagccattggacctgcagcttcagttactcggaagtcaatacccaaagacgtcatggtgatcagtgatgatgaattcgatgaagaactctcaagcaaggacgatgagatgaatactatttatctgagttcagacccaatggaaacaacaaaatgtaccttgcaaaaattggatgtgaaaagggaggtggttatcacaggaaatggtgagcagggtagtccactattgaaggaagtaagggttcatagcaaatgttatgacatcatagagatcaatgatgatgagtctattgaagttacaagaaaggaagatgaggcgatcgcaatgcatgtgaattcagacccaatggaaacaacaaaatgtaccttgcaagaattggatgcgaaaagggaggtggttatcacaggaaatagtgagcagggtagtccagtattgaaggaagtaagggttcatagcaaatgttatgacatcatagatatcaatgatgatgagtctattgaagttacaagaaaggaagatgaggcgatcgcaatgcatgtgaattcagacccaatggaaacaacaaaatgtaccttgcaagaattggatgtgaaaagggaggtggttatcacaggagatggtgagcagggtagtcctctattgaaggaagttagggtgcaaagcaaatgttatgacatcatagagattgatgatgagtctggtgaagttacaagcaagggagaggaggcgatcacaatgcatttgaattcacccatgttggacaaaatagcatccacattgagagaggcaaatgaggaaagcaagccaggcaacacaagtgataagcgggaaaactcagtgttgaaggacatgccgcgaaacaattgcgattccgaggacgctaccgttctaaacgatatcaccctcagaaaagaactggctgaagtaactcatgtctctagtgctcaaattaatattgatacctcagaagcatccactaaagaaatgagggcatgcattacttcaggggaggcagataagagaggcaagctcaacaagaaaaggctagctgctttggaaggtgatgaaaaagaaaatgaagatatgtcagtatcaaaccaagaaataggatctcacatggattgccaagaagtcaataagaaaggtatggtaactgatgaactgacattatatcctacacatcagtctagcagaagcaaatgaaataccgctaaatttgttgctaatgcattccttttatcctttttcttttgtaggaaacaatgaaagttcttctagcattctggtggatggaaatgctgatcatgtcaagaaaacagtttctactaagacgccctgcaaaaatgcagatcaagaaggtttccaccaaagcagcgaagtcggaatggaagaaatggttagaggggcatctgaagctcaacaagcacaaaaggctcaactggaagcagcaatcgatggtctcaaggaagagattgcaatgctagagaggcaggtcagggatactaaccctaggaaagcttgatgtttaacttcagaatatgtaataggttcttgggagtttagatggcatctcctgatgttggtgaatctctttagtattaagcagatgttctgtgtttggtcagtaacttggataaaccctattgtctaatgtctatgcattagaagatctacttagtgacacattactgatatgttctcaattttgctcttgctggctcctctttggactaatggttgaatggaagtaactttgtcaaaaatgatgcacatatcgacagttttttttttatttcttttagttctaactgacatccaagctgggtatcctattttacatgaccgattgggtattgcaatagagtgaatgcacataatcactaagataaaaacaaaatctaagttggaattcgtgcttacaattgtgcttcgctagccttttctttaagaacatgatcaggatgacatagctaaaatcaagacataaaggtttgataggaacaccatagaaagttggaaacggagactgcaacttccaggtgattcttgtcataagtggtttgaactttcaacaggaatttgtagtttttgtactgtcttcaaatttaacatcaaaggatattgtgtaaagaaatcgagctcctgttcaaatagaattcaaactattacatggatcatgagaagaaaataaaatggtgccaaacataaataaaaacaaccgtagcaaatggaatacaaatactgtgtccagagaatagaagatctacacacttgcgtccaagtataaatttacatcttgcaggacttggccctcactcgatttacaagaggaaataatgtctttgaaaaatgcactgccttctgaagcatcaacattaggtgcctaagaccgagggaaaatccaaaagaagcttgcattgagtggttgccatggtcagcaatctgagttgatttcttttgctggcaagttatcttcaggacttgcatgcatcacagcaccccaatcaatttgcataatccaacatgagtgtagttcaagccttaagatagtttaaactccagagtaggccccagccgtgctccatcgtcaccaaagttcaactttcaagaattgctctctcactgtagaacatcttctttagcagaagaatccagaatatggttgtggcaaacatgaactttggagcattatagcctggaaagctggacctctctttcaccactgcaattgtgatgtcagtttgtcaccctgttgatgctgaagtcaattcaaagcatggaacaacccaaaactgtggagtagaagtactgccttcTtttttttttgaaacaggacacagccatacagataaaagtaaaataaaatatagaatagaacaaatatagattccacgaaagaatgtacagatccatatcgtagttataatacttttgccaaatttgtcaatttgtaacttatcatatagatactatccagatacagattaacatgataacatctcggcacactagataaatattggaagttatagttttcactttttggtcatcctaactgcaaatttgaagagctagcataaggtaaactttacccgtacataaatatgatggccctgtatggtcgagaaggttgagtatggatttcagaagtcagaactactccaatctatctctgtagaaagacaagttatcaagaagtgatgtcttagtagaatgaaaacattgctctgcaaaatatgtcgatacaaaaacagaggctcaccatttcatccatttccgggacagagtctatgaccaaatatacctaattgacagacataatagactgatatatactcatcttaatgctgattgctgtcaggtcaagccgcaaaatttctaatatgcagctgatgattactgaactagttatgcctgcatgccactgtaatccttatttacagtagtgcgagattttgttaatacggtgacagtgtgacacctatcagtatgggaccatttgccatactctgttgctttatcgaatttgttacaggtgaaaagttttgtaccaccacagaggtgcaccatctgttacccatCccccacaagaaaagcttgcaacttgttgccatcctgatcctgtacccagctataggctggatttttctgtactttcctcgatttcattaatttcctgatcttgtttgcttcattccatctcccagtctcagcatacatgtttatcataagagtatagtagcctgaatgctctggcttcaattcaaacaaatgctctgctgcccattgtgctaattcgatatttccatgtatacggcaagccccaagcaatgctccccaaacatcggaatttgcaggaaaaggcatgtctctgataatttcagcacatttagacagttgtccagcacgcccaagaagatcaaccatgcaagcatagtgcatttgctgtggctcaatattttgagcaaccatctgactgaagtatttCttccctttgtctacaagcccaccatggctacatgctgcaagcactgcaatgtaggatacatgatcatagtccagaccatcacctttcatcagttcaaacaattcaaatgcaatatcaatttgaccatgcatcccatatcccaatatcatagtattccatgaagcaacatccttctttgtaatcttattaaaaatctttgatgcagtgacaagcattccacctttagtgtacaagtccagcaaggaattagaaagaaagggatggccacttaacaatctcctaaccaaaacacaatgaatttctttgccatgcttaaatacagataagttggtacatgctgatagagctcccatgaaggaaacagcatcataatcaattccaacagacctcatctgcttaaaaagaagaagagattcaaaacaccatggactctgtgaatatcccaaaatcaaagtattgtacgatacatcgtccttctctgacctttcaaaaatattccgtgccaagctcagctgtccgcatttggaatacatatcaatcagggcatttgatatgaacaaatcgaacattaagcctctacggatcgaccatgcatggatctgcttacccatctttagagaggccatcctcgcacaagctggaagcacattcactagtgtgatagaatttgggcattccccacttttttgcatatctgtgacaagcctgaacgcctcagtctcagctccattttgcacaagatttgcgatcattgcattccatgacacaacattgcggtccttcatttgttcaaagatggtagatgctttctccaaagaaccaaatttggcatacatatcaacaagtgagttggcaacaaaaatatccaagtccattgctctctttatgctatacccatgcacctcccttcccaaatcaaaacttccaagctcaaccaatgcaggaagcaaactagacaatgtgatagaacctggcatgacattatgctctgacattttcctaaacattctcagcacatcaccataaaaccctgcattaagaaagcatcctattgcagaattccaagaaacctcattttgttccagcattccatcaaacacctgcatcgatgcctcaacatccccaaacttaccatacatatcaaccaacgcattcgcgagattcaccatggtgttcaagccaactttcactgccaacgcatggatgctcaacccaaacttctcctcttgctctgtgccgcaggcaggcacaactgacactaagcttgccacgttcaaaggaaacccactcctcatcatgctcaccagcgcccgtctcgcgtcatgaaacataccgttcaccaagaacgctgacacaagcgagttccacgagacgacgtcccgctcaggcatttcgtcgaacaccctgcgcgcgtcgcaggcctttccacaggccgcgtagaacgcgacgagggtgttgcccgtgaagacgtcagccaggtgcccccgcctgagagccgaggcgtgcagctcgaggcccttatcctcggcggaagcgacagccgcggcggcggcgtggagggcgaagggaaaggtgcggtcatccgggcgcacggcggagcggagcatgaggttgtacacccgcagggcctcggaggggagggacgcggaggagagcgcgcgggagagggagttccagaggaatgcggagcggagacggagcgggtggtggcggaggacgaggcgcgcggaggcgaggtcggagagcgcggcgtacgagaggagcagcgcgcccgcgagcggcagggacgtggcgagcgcgccggagacgagggacgccgcgtgggcgcggcggagcgcgaggcctccgccgccgccgccgcatccgtggagctcgaggacatgcgcgtggaggcgcgccgccgacgcggcgggagcgcgcggcggcatgagaagcagaggaagtggactggagcaggg

More
CDS seq

atgccgccgcgcgctcccgccgcgtcggcggcgcgcctccacgcgcatgtcctcgagctccacggatgcggcggcggcggcggaggcctcgcgctccgccgcgcccacgcggcgtccctcgtctccggcgcgctcgccacgtccctgccgctcgcgggcgcgctgctcctctcgtacgccgcgctctccgacctcgcctccgcgcgcctcgtcctccgccaccacccgctccgtctccgctccgcattcctctggaactccctctcccgcgcgctctcctccgcgtccctcccctccgaggccctgcgggtgtacaacctcatgctccgctccgccgtgcgcccggatgaccgcacctttcccttcgccctccacgccgccgccgcggctgtcgcttccgccgaggataagggcctcgagctgcacgcctcggctctcaggcgggggcacctggctgacgtcttcacgggcaacaccctcgtcgcgttctacgcggcctgtggaaaggcctgcgacgcgcgcagggtgttcgacgaaatgcctgagcgggacgtcgtctcgtggaactcgcttgtgtcagcgttcttggtgaacggtatgtttcatgacgcgagacgggcgctggtgagcatgatgaggagtgggtttcctttgaacgtggcaagcttagtgtcagttgtgcctgcctgcggcacagagcaagaggagaagtttgggttgagcatccatgcgttggcagtgaaagttggcttgaacaccatggtgaatctcgcgaatgcgttggttgatatgtatggtaagtttggggatgttgaggcatcgatgcaggtgtttgatggaatgctggaacaaaatgaggtttcttggaattctgcaataggatgctttcttaatgcagggttttatggtgatgtgctgagaatgtttaggaaaatgtcagagcataatgtcatgccaggttctatcacattgtctagtttgcttcctgcattggttgagcttggaagttttgatttgggaagggaggtgcatgggtatagcataaagagagcaatggacttggatatttttgttgccaactcacttgttgatatgtatgccaaatttggttctttggagaaagcatctaccatctttgaacaaatgaaggaccgcaatgttgtgtcatggaatgcaatgatcgcaaatcttgtgcaaaatggagctgagactgaggcgttcaggcttgtcacagatatgcaaaaaagtggggaatgcccaaattctatcacactagtgaatgtgcttccagcttgtgcgaggatggcctctctaaagatgggtaagcagatccatgcatggtcgatccgtagaggcttaatgttcgatttgttcatatcaaatgccctgattgatatgtattccaaatgcggacagctgagcttggcacggaatatttttgaaaggtcagagaaggacgatgtatcgtacaatactttgattttgggatattcacagagtccatggtgttttgaatctcttcttctttttaagcagatgaggtctgttggaattgattatgatgctgtttccttcatgggagctctatcagcatgtaccaacttatctgtatttaagcatggcaaagaaattcattgtgttttggttaggagattgttaagtggccatccctttctttctaattccttgctggacttgtacactaaaggtggaatgcttgtcactgcatcaaagatttttaataagattacaaagaaggatgttgcttcatggaatactatgatattgggatatgggatgcatggtcaaattgatattgcatttgaattgtttgaactgatgaaaggtgatggtctggactatgatcatgtatcctacattgcagtgcttgcagcatgtagccatggtgggcttgtagacaaagggaaGaaatacttcagtcagatggttgctcaaaatattgagccacagcaaatgcactatgcttgcatggttgatcttcttgggcgtgctggacaactgtccaatggctttgttgctgtcgtcgcttgctgcatcctcgacgaggcaacagacctctga

More
Protein seq

MPPRAPAASAARLHAHVLELHGCGGGGGGLALRRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSNGFVAVVACCILDEATDL

Function Pentatricopeptide repeat-containing protein At1g18485 [UniProtKB/Swiss-Prot:Q0WN60]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_12g0008500 OsKeNa_12g0008500.01 Chr12 8162468 8168431 - NAM
CDS seq

atgccgccgcgcgctcccgccgcgtcggcggcgcgcctccacgcgcatgtcctcgagctccacggatgcggcggcggcggcggaggcctcgcgctccgccgcgcccacgcggcgtccctcgtctccggcgcgctcgccacgtccctgccgctcgcgggcgcgctgctcctctcgtacgccgcgctctccgacctcgcctccgcgcgcctcgtcctccgccaccacccgctccgtctccgctccgcattcctctggaactccctctcccgcgcgctctcctccgcgtccctcccctccgaggccctgcgggtgtacaacctcatgctccgctccgccgtgcgcccggatgaccgcacctttcccttcgccctccacgccgccgccgcggctgtcgcttccgccgaggataagggcctcgagctgcacgcctcggctctcaggcgggggcacctggctgacgtcttcacgggcaacaccctcgtcgcgttctacgcggcctgtggaaaggcctgcgacgcgcgcagggtgttcgacgaaatgcctgagcgggacgtcgtctcgtggaactcgcttgtgtcagcgttcttggtgaacggtatgtttcatgacgcgagacgggcgctggtgagcatgatgaggagtgggtttcctttgaacgtggcaagcttagtgtcagttgtgcctgcctgcggcacagagcaagaggagaagtttgggttgagcatccatgcgttggcagtgaaagttggcttgaacaccatggtgaatctcgcgaatgcgttggttgatatgtatggtaagtttggggatgttgaggcatcgatgcaggtgtttgatggaatgctggaacaaaatgaggtttcttggaattctgcaataggatgctttcttaatgcagggttttatggtgatgtgctgagaatgtttaggaaaatgtcagagcataatgtcatgccaggttctatcacattgtctagtttgcttcctgcattggttgagcttggaagttttgatttgggaagggaggtgcatgggtatagcataaagagagcaatggacttggatatttttgttgccaactcacttgttgatatgtatgccaaatttggttctttggagaaagcatctaccatctttgaacaaatgaaggaccgcaatgttgtgtcatggaatgcaatgatcgcaaatcttgtgcaaaatggagctgagactgaggcgttcaggcttgtcacagatatgcaaaaaagtggggaatgcccaaattctatcacactagtgaatgtgcttccagcttgtgcgaggatggcctctctaaagatgggtaagcagatccatgcatggtcgatccgtagaggcttaatgttcgatttgttcatatcaaatgccctgattgatatgtattccaaatgcggacagctgagcttggcacggaatatttttgaaaggtcagagaaggacgatgtatcgtacaatactttgattttgggatattcacagagtccatggtgttttgaatctcttcttctttttaagcagatgaggtctgttggaattgattatgatgctgtttccttcatgggagctctatcagcatgtaccaacttatctgtatttaagcatggcaaagaaattcattgtgttttggttaggagattgttaagtggccatccctttctttctaattccttgctggacttgtacactaaaggtggaatgcttgtcactgcatcaaagatttttaataagattacaaagaaggatgttgcttcatggaatactatgatattgggatatgggatgcatggtcaaattgatattgcatttgaattgtttgaactgatgaaaggtgatggtctggactatgatcatgtatcctacattgcagtgcttgcagcatgtagccatggtgggcttgtagacaaagggaaGaaatacttcagtcagatggttgctcaaaatattgagccacagcaaatgcactatgcttgcatggttgatcttcttgggcgtgctggacaactgtccaatggctttgttgctgtcgtcgcttgctgcatcctcgacgaggcaacagacctctga

More
Protein seq

MPPRAPAASAARLHAHVLELHGCGGGGGGLALRRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSNGFVAVVACCILDEATDL

More
Gene Transcript Chromosome Start End Strand Source
OsKeNa_12g0008500 OsKeNa_12g0008500.02 Chr12 8164606 8168461 - IsoSeq
CDS seq

cctgctccagtccacttcctctgcttctcatgccgccgcgcgctcccgccgcgtcggcggcgcgcctccacgcgcatgtcctcgagctccacggatgcggcggcggcggcggaggcctcgcgctccgccgcgcccacgcggcgtccctcgtctccggcgcgctcgccacgtccctgccgctcgcgggcgcgctgctcctctcgtacgccgcgctctccgacctcgcctccgcgcgcctcgtcctccgccaccacccgctccgtctccgctccgcattcctctggaactccctctcccgcgcgctctcctccgcgtccctcccctccgaggccctgcgggtgtacaacctcatgctccgctccgccgtgcgcccggatgaccgcacctttcccttcgccctccacgccgccgccgcggctgtcgcttccgccgaggataagggcctcgagctgcacgcctcggctctcaggcgggggcacctggctgacgtcttcacgggcaacaccctcgtcgcgttctacgcggcctgtggaaaggcctgcgacgcgcgcagggtgttcgacgaaatgcctgagcgggacgtcgtctcgtggaactcgcttgtgtcagcgttct

More
Protein seq

PAPVHFLCFSCRRALPPRRRRASTRMSSSSTDAAAAAEASRSAAPTRRPSSPARSPRPCRSRARCSSRTPRSPTSPPRASSSATTRSVSAPHSSGTPSPARSPPRPSPPRPCGCTTSCSAPPCARMTAPFPSPSTPPPRLSLPPRIRASSCTPRLSGGGTWLTSSRATPSSRSTRPVERPATRAGCSTKCLSGTSSRGTRLCQRS

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.622101 0.294018

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0256900 SBH 0.763621 0.540320 0.161100
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g15460 RBH 0.350555 0.626938 0.091596
Nipponbare | IRGSP 1.0 | RAP-db Os12g0256900 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0008370 RBH 0.273740 0.0 0.735647
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0008530 RBH 0.800410 2.976177 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0008350 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0008180 RBH 0.773716 0.000000 0.835742
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0123300 RBH 0.4974575 1.6135635 0.5363685
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0008150 RBH 0.000000 0.048273 0.075796
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0130300 RBH 0.5398135 1.4548295 1.472842
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0008080 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0008390 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0008250 RBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0008240 RBH 0.000000 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0008370 RBH 0.056708 1.329847 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G008240 RBH 0.000000 0.000000 0.518754
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0008110 RBH 0.000000 1.564269 1.157692
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.