Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0256900 | OGI:12023000 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:8823315-8825166 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGTAAAGAAATCGAGCTCCTGTTCAAATAGAATTCAAACTATTACATGGATCATGAGAAGAAAATAAAATGGTGCCAAACATAAATAAAAACAACCGTAGCAAATGGAATACAAATACTGTGTCCAGAGAATAGAAGATCTACACACTTGCGTCCAAGTATAAATTTACATCTTGCAGGACTTGGCCCTCACTCGATTTACAAGAGGAAATAATGTCTTTGAAAAATGCACTGCCTTCTGAAGCATCAACATTAGGTGCCTAAGACCGAGGGAAAATCCAAAAGAAGCTTGCATTGAGTGGTTGCCATGGTCAGCAATCTGAGTTGATTTCTTTTGCTGGCAAGTTATCTTCAGGACTTGCATGCATCACAGCACCCCAATCAATTTGCATAATCCAACATGAGTGTAGTTCAAGCCTTAAGATAGTTTAAACTCCAGAGTAGGCCCCAGCCGTGCTCCATCGTCACCAAAGTTCAACTTTCAAGAATTGCTCTCTCACTGTAGAACATCTTCTTTAGCAGAAGAATCCAGAATATGGTTGTGGCAAACATGAACTTTGGAGCATTATAGCCTGGAAAGCTGGACCTCTCTTTCACCACTGCAATTGTGATGTCAGTTTGTCACCCTGTTGATGCTGAAGTCAATTCAAAGCATGGAACAACCCAAAACTGTGGAGTAGAAGTACTGCCTTCTTTTTTTTTTGAAACAGGACACAGCCATACAGATAAAAGTAAAATAAAATATAGAATAGAACAAATATAGATTCCACGAAAGAATGTACAGATCCATATCGTAGTTATAATACTTTTGCCAAATTTGTCAATTTGTAACTTATCATATAGATACTATCCAGATACAGATTAACATGATAACATCTCGGCACACTAGATAAATATTGGAAGTTATAGTTTTCACTTTTTGGTCATCCTAACTGCAAATTTGAAGAGCTAGCATAAGGTAAACTTTACCCGTACATAAATATGATGGCCCTGTATGGTCGAGAAGGTTGAGTATGGATTTCAGAAGTCAGAACTACTCCAATCTATCTCTGTAGAAAGACAAGTTATCAAGAAGTGATGTCTTAGTAGAATGAAAACATTGCTCTGCAAAATATGTCGATACAAAAACAGAGGCTCACCATTTCATCCATTTCCGGGACAGAGTCTATGACCAAATATACCTAATTGACAGACATAATAGACTGATATATACTCATCTTAATGCTGATTGCTGTCAGGTCAAGCCGCAAAATTTCTAATATGCAGCTGATGATTACTGAACTAGTTATGCCTGCATGCCACTGTAATCCTTATTTACAGTAGTGCGAGATTTTGTTAATACGGTGACAGTGTGACACCTATCAGTATGGGACCATTTGCCATACTCTGTTGCTTTATCGAATTTGTTACAGGTGAAAAGTTTTGTACCACCACAGAGGTGCACCATCTGTTACCCATCCCCCACAAGAAAAGCTTGCAACTTGTTGCCATCCTGATCCTGTACCCAGCTATAGGCTGGATTTTTCTGTACTTTCCTCGATTTCATTAATTTCCTGATCTTGTTTGCTTCATTCCATCTCCCAGTCTCAGCATACATGTTTATCATAAGAGTATAGTAGCCTGAATGCTCTGGCTTCAATTCAAACAAATGCTCTGCTGCCCATTGTGCTAATTCGATATTTCCATGTATACGGCAAGCCCCAAGCAATGCTCCCCAAACATCGGAATTTGCAGGAAAAGGCATGTCTCTGATAATTTCAGCACATTTAGACAGTTGTCCAGCACGCCCAAGAAGATCAACCATGCAAGCATAGTGCATTTGCTGTGGCTCAATATTTTGAGCAACCATCTG
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| CDS seq | ATGGTTGCTCAAAATATTGAGCCACAGCAAATGCACTATGCTTGCATGGTTGATCTTCTTGGGCGTGCTGGACAACTGTCTAAATGTGCTGAAATTATCAGAGACATGCCTTTTCCTGCAAATTCCGATGTTTGGGGAGCATTGCTTGGGGCTTGCCGTATACATGGAAATATCGAATTAGCACAATGGGCAGCAGAGCATTTGTTTGAATTGAAGCCAGAGCATTCAGGCTACTATACTCTTATGATAAACATGTATGCTGAGACTGGGAGATGGAATGAAGCAAACAAGATCAGGAAATTAATGAAATCGAGGAAAGTACAGAAAAATCCAGCCTATAGCTGGGTACAGGATCAGGATGGCAACAAGTTGCAAGCTTTTCTTGTGGGGGATGGGTAA |
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| Protein seq | MVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGDG |
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| Function | Pentatricopeptide repeat-containing protein At4g21300 [UniProtKB/Swiss-Prot:Q9STE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0256900 | Os12t0256900-01 | Chr12 | 8823315 | 8825166 | - | irgsp1_rep | ||
| CDS seq | ATGGTTGCTCAAAATATTGAGCCACAGCAAATGCACTATGCTTGCATGGTTGATCTTCTTGGGCGTGCTGGACAACTGTCTAAATGTGCTGAAATTATCAGAGACATGCCTTTTCCTGCAAATTCCGATGTTTGGGGAGCATTGCTTGGGGCTTGCCGTATACATGGAAATATCGAATTAGCACAATGGGCAGCAGAGCATTTGTTTGAATTGAAGCCAGAGCATTCAGGCTACTATACTCTTATGATAAACATGTATGCTGAGACTGGGAGATGGAATGAAGCAAACAAGATCAGGAAATTAATGAAATCGAGGAAAGTACAGAAAAATCCAGCCTATAGCTGGGTACAGGATCAGGATGGCAACAAGTTGCAAGCTTTTCTTGTGGGGGATGGGTAA
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| Protein seq | MVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGDG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0256900 | RBH | 0.763621 | 0.540320 | 0.161100 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g15460 | RBH | 0.350555 | 0.626938 | 0.091596 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016800 | SBH | 0.109056 | 0.0 | 0.546103 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016930 | SBH | 0.030158 | 0.513378 | 0.419964 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007660 | SBH | 0.634256 | 0.0 | 0.457845 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016610 | SBH | 0.0 | 0.016931 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016120 | SBH | 0.687577 | 2.268044 | 0.371349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0123300 | RBH | 0.4974575 | 1.6135635 | 0.5363685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016070 | SBH | 0.096414 | 0.0 | 0.082328 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0130300 | RBH | 0.5398135 | 1.4548295 | 1.472842 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016300 | SBH | 0.053336 | 0.063565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016520 | SBH | 0.124130 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007400 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016490 | SBH | 0.125648 | 0.0 | 0.156925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016710 | SBH | 0.000000 | 0.976375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007350 | SBH | 0.102423 | 0.452412 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016150 | SBH | 0.792615 | 3.756668 | 0.520853 |
