Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0006800 | OGI:10037060 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:5554273-5557954 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattttatagtgaaacaagttgggaagaagttgttaataagagattgcccagggaaataggtaaaagaaatttccatccaagatttaataactgatccattctcatcctgggtaaagtccatcttattgtgatagaaatgaagagaaataaataatctttagttaatgtaataaagatactcattgtcatttctaaaattccaaccattttattcatttggaaaaatccaaaaaaggatatatagggaatagacaaattccacccgcctaagtagagaactgttacaaataaagaggaaactaataaatttaggtaagaaacaagataaaataaaccatatttgataccagaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagaaaacctataggctgacgccaaagattccatccAaaaaaaaccatattttgactgtgcttcaactatatcaactatacttgaattgttggataatcatagtcgacgataacatcacagttcccaccgctattccaaaaccgtacatgaaaccttagtttcatacggctcctctatgatcagaaaaaaggaaagtactgtttcatttcgttattatcttcttgggcgtagttagaattatctaagataaaatcgatttcaatgtcctaaattagaccaaaggaattatgtctgctagaataataaaaaacgcttcggaattcatctcatcctttataatataatggtactttttctttgttcagcaataacttaatcttggaataaaacactcgttataacaattaataaacgaaaagagttgggtattagttcatgaagaattctgtatgaatatggataaacgacggaaagaataaataaagatcttttttttgtattgcattccatatcttttgtcctattcttctttccccgaggggtatttaaaaagaaaaaaggaataaagggttaattcgttcttgatagccatttccttaacaagtgaatgggaacatactctggatcagaatccgaagaaagtactacttgctcatttccactaatttcaagtccttattatgattccttttatgaggaaaaatatctaatgctttagattccctcattactaatcctttgtgtactttagtgtttctaatccctcactaacttttgatggattcctttatgattacaactttctgtatcaggaatcccttattattgcccgcttcaagatatgatgactaatcaaaaaatctcaaccttggggtaaagaatttacaccgcttatgtttacttccattttttcttgtacataggaaatgagaTttttttTCTTTTTACTACAAATTAATAAGCAGTTTTGTTTCTCTCATATAGCTATCTAGTTTAACTTACTAACCTGAATATAGAATAAGAAAAGGAGGATAAATATTCAATGAATTTCAGAGGAAAAAGATCCTATTTTAACGAATCGCACGTAGAGATATTGCTAGTACACAAAAAGTTAATGGGATTTCATAACTAATAGATTGAGCGGCAGCTCGTAGACCACCTGAAAAAGAATATTTATTATTTGAGCTATATCCTGCCATAAGAAGACCAATAGGAGCAATACTTGAAATGGCAATCCATAAAAAAACACCAATACTAAGATCCGCTAAAACAAAGCGATATCCCAAAGGAATAACTAAAAAACTTAATAAAATTGATATGACTGCTATAGACGGTCCAATGCTAAATAAGGGAATATCCCCTCGGGATGGCAAGATATCCTCTTTAAAAAGTAGCTTAGTTCCATCTGCTATAGCTTGAAGCAGTCCCAGGGGGCTAGCATATTCAGGACCAATACGTTGTTGTATCGATGCGGATATTTCTCTTTCTAACCACACAATTACGAGTACTTCTATTGTGATTCCCAGTAAGAGGGTCAAAATGGGTAGAATCCATATCAGTCCATAGACTTCTTTTAATAATTCCAAGTTCGAAAAAGAATTGATAGCTTCTACCTGTACCCTGTCTATTATCATTTCAACGATCAACTTCTCCCATAATGATATCTATACTACCTAATATCGTCATGATATCAGCCAATTTCATTtttttttactagctgaggaagaatttgcaaattaataaaaccgggtggacgaattttccatctccaggggaaaagactatcatctcctaccagataaattcctatttcaccttttggggcttccactcttgcataaagctcttgttttgacaattcaaaattgggtgaaggttttttaccaagaaattgatattcaaaatcattccattcggaattctttgctttcttaaagtgtcggacttctaaattctcataagggcccccaggaattttttctacagcctgttgaataattttgattgattccctcatttcaccgattcgtactaaatagcgtgctaatgaatccccttctttttgccattggactttccaatcgaattgattgtaagactcgtaaagatcaactttacgaagatcccattgtattccagaagctcgtaacatggggcccgataagccccaatttacagcttcttctccgctaataaaaccaactccctcaactcgttccaaaaaaatgggattctgtgtaataagttgttgatattcaataactcctcgtaaaaaataatcacagaaatctaaacatttatcgatccatccataaggcagatcggcagcaactcctccgatgcgaaagtaattatgcatcattcgcatacctgtagcagcttcaaatagatcatatattaattctctctctctaaaaatataaaaaaaggagtctgcgcaccgagatctgccataaaagatccaagccataacaagtaagaagctatacagctcaattctaacataattaccctaatatagctggctctttggggtatttgaatattctccaagaattctggtgcatttaccgttattgcttctgtaaacatagtagctaaataatcccaacgtgttacataaggtaagtattgtataatagtttggttttccgcgattttttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattattccatgaaaatagattattccatgaattcctcaaaatgaggctcatcaaaatgcaaaatctaagactactataagactactaataaaataagaaaaaaaattcgaacgatgaaattaccgctccctaatatccaactgactgattaatttcttataacgtactctatttttctttgccaaataagccagcaaacgttgacgttttcccaaaagtcttcggagacctctttccgatgaaaaatcttgtgtaattccaaatgtgaagcaagtctccgtatcttattagtgaaactgaatacttgaaattcaacagaaccccagttttcttctttttcttctttaaccataaatccaaaaatttttctacctcctttctttttcgtgtattttt
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| CDS seq | atgagtctaccgcttacaagaaaagatctcatgatagtcaatatgggccctcagcacccatcaatgcatggtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacaaaggaatggaaaaaatcgcggaaaaccaaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattcttggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagctgtatagcttcttacttgttatggcttggatcttttatggcagatctcggtatgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatttctgtgattattttttacgaggagttattgaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagaagctgtaaattggggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcgtaaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggggattcattagcacgctatttagtacgaatcggtgaaatgagggaatcaatcaaaattattcaacaggctgtagaaaaaattcctgggggcccttatgagaatttagaagtccgacactttaagaaagcaaagaattccgaatggaatgattttgaatatcaatttcttggtaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaaggtgaaataggaatttatctgATATCATTATGGGAGAAGTTGATCGTTGAAATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTAGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGATATAGCTCAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAatggactttacccaggatgagaatggatcagttattaaatcttggatggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactataaaataa
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHKGMEKIAENQTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSCIASYLLWLGSFMADLGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRHFKKAKNSEWNDFEYQFLGKKPSPNFELSKQELYARVEAPKGEIGIYLISLWEKLIVEMIIDRVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYASPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIADIAQIINILFQVVYELPLNLLMDFTQDENGSVIKSWMEISFTYFPGQSLINNFFPTCFTIK |
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| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0006800 | OsKeNa_12g0006800.01 | Chr12 | 5554273 | 5557954 | - | NAM | ||
| CDS seq | atgagtctaccgcttacaagaaaagatctcatgatagtcaatatgggccctcagcacccatcaatgcatggtgttcttcgactgatcgttactctcgatggtgaagatgttattgattgtgaacccatattaggctatttacacaaaggaatggaaaaaatcgcggaaaaccaaactattatacaatacttaccttatgtaacacgttgggattatttagctactatgtttacagaagcaataacggtaaatgcaccagaattcttggagaatattcaaataccccaaagagccagctatattagggtaattatgttagaattgagctgtatagcttcttacttgttatggcttggatcttttatggcagatctcggtatgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatttctgtgattattttttacgaggagttattgaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagaagctgtaaattggggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcgtaaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggggattcattagcacgctatttagtacgaatcggtgaaatgagggaatcaatcaaaattattcaacaggctgtagaaaaaattcctgggggcccttatgagaatttagaagtccgacactttaagaaagcaaagaattccgaatggaatgattttgaatatcaatttcttggtaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaaggtgaaataggaatttatctgATATCATTATGGGAGAAGTTGATCGTTGAAATGATAATAGACAGGGTACAGGTAGAAGCTATCAATTCTTTTTCGAACTTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGGGAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTATTGGTCCTGAATATGCTAGCCCCCTGGGACTGCTTCAAGCTATAGCAGATGGAACTAAGCTACTTTTTAAAGAGGATATCTTGCCATCCCGAGGGGATATTCCCTTATTTAGCATTGGACCGTCTATAGCAGATATAGCTCAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAatggactttacccaggatgagaatggatcagttattaaatcttggatggaaatttcttttacctatttccctgggcaatctcttattaacaacttcttcccaacttgtttcactataaaataa
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| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHKGMEKIAENQTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSCIASYLLWLGSFMADLGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRHFKKAKNSEWNDFEYQFLGKKPSPNFELSKQELYARVEAPKGEIGIYLISLWEKLIVEMIIDRVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYASPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIADIAQIINILFQVVYELPLNLLMDFTQDENGSVIKSWMEISFTYFPGQSLINNFFPTCFTIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.291412 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21394 | RBH | 37.535622 | 35.148968 | 5.206158 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006720 | RBH | 40.240730 | 18.384823 | 68.010399 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006500 | RBH | 18.710281 | 9.579867 | 42.685699 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006790 | RBH | 6.022785 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006690 | RBH | 28.128456 | 0.325253 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003590 | SBH | 482.400391 | 37.112015 | 395.126709 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006460 | SBH | 30.809896 | 2.530843 | 8.177909 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0079300 | SBH | 567.848663 | 25.152075 | 53.617737 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009630 | SBH | 1245.698364 | 89.713905 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021400 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006560 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004700 | SBH | 199.033234 | 82.940857 | 178.329147 |
