Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023970 | OGI:11080910 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:29270244-29271515 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgcttgacggaactgttgaagaaaattgaaaagctaattgatgatgtagagaagactgttgggttggctaacctgccaagaattgaggtaacaggccaacatgatgctcgtaatcgaggcctttccgatgagccaactatggaagatctgttgtggagctaccaccatcttgatgagccgttgaaccgatgcttgtcttactgcagtattttccccaaaaggcatcggctgcaacgtgacgaaataattaacatgtgggtggcagaagggttcatagaagtatccgatgcaggtgaggacatggaagaaggttgtgcgagatactttgacgaattagtggatgcctcttttctgcaaccaactgagaaaatgagaggaatgctttatgatgttagttacttcacaatgcatgatctggctcatgatttagcagaaaaggtcgccggaagtgatattttgagaattgaggatgatggatggtcaggagaagcccctgaagatgttcgccgtgtttttgttcagacttcctttggagacccaataattgagaagattggcaaactggaaaatctacgcaccctcatcgtttatactgatacaggggacaagctaactgaggacagagtctttgaaaccttgatgaagctaaggaaacttcgggtactgagagtacatagtgaaagtttcaatgtattctcagtcccatcatctatttgtcagctaaagcacctgcgctatatagcttttcggttccgtaagcttgctttacctagcacatttagcaagctttatcatatgcaggttctagattttggtccttgcggaaatttagcattttcatctgttgaagatatggccaacctcatcaacttgcgtcagatcatcatagagtatcctgcagacataaactttccaaagattggcaggatgacattactgaaaatgttaccactctacactgtaaggaaggaagaagggtatgggatacaggagttggagcacttagacaagctctctggtaggatgcagatccacggccttcaaaatgtccaaagcaaagatgaagcagccaaagcaatgctagctaataaggaagagctcacagacctgacactgcattggaatgatgatagctgcaatccagatatacaggcagatgttcttgaaggtctttgccctccgatgtgccttccaaagctgagaatcgacgagctatcacggcatgaagtacccaacatggatggtggacgcgcagaatggtccaaatga
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| CDS seq | atgcgcttgacggaactgttgaagaaaattgaaaagctaattgatgatgtagagaagactgttgggttggctaacctgccaagaattgaggtaacaggccaacatgatgctcgtaatcgaggcctttccgatgagccaactatggaagatctgttgtggagctaccaccatcttgatgagccgttgaaccgatgcttgtcttactgcagtattttccccaaaaggcatcggctgcaacgtgacgaaataattaacatgtgggtggcagaagggttcatagaagtatccgatgcaggtgaggacatggaagaaggttgtgcgagatactttgacgaattagtggatgcctcttttctgcaaccaactgagaaaatgagaggaatgctttatgatgttagttacttcacaatgcatgatctggctcatgatttagcagaaaaggtcgccggaagtgatattttgagaattgaggatgatggatggtcaggagaagcccctgaagatgttcgccgtgtttttgttcagacttcctttggagacccaataattgagaagattggcaaactggaaaatctacgcaccctcatcgtttatactgatacaggggacaagctaactgaggacagagtctttgaaaccttgatgaagctaaggaaacttcgggtactgagagtacatagtgaaagtttcaatgtattctcagtcccatcatctatttgtcagctaaagcacctgcgctatatagcttttcggttccgtaagcttgctttacctagcacatttagcaagctttatcatatgcaggttctagattttggtccttgcggaaatttagcattttcatctgttgaagatatggccaacctcatcaacttgcgtcagatcatcatagagtatcctgcagacataaactttccaaagattggcaggatgacattactgaaaatgttaccactctacactgtaaggaaggaagaagggtatgggatacaggagttggagcacttagacaagctctctggtaggatgcagatccacggccttcaaaatgtccaaagcaaagatgaagcagccaaagcaatgctagctaataaggaagagctcacagacctgacactgcattggaatgatgatagctgcaatccagatatacaggcagatgttcttgaaggtctttgccctccgatgtgccttccaaagctgagaatcgacgagctatcacggcatgaagtacccaacatggatggtggacgcgcagaatggtccaaatga
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| Protein seq | MRLTELLKKIEKLIDDVEKTVGLANLPRIEVTGQHDARNRGLSDEPTMEDLLWSYHHLDEPLNRCLSYCSIFPKRHRLQRDEIINMWVAEGFIEVSDAGEDMEEGCARYFDELVDASFLQPTEKMRGMLYDVSYFTMHDLAHDLAEKVAGSDILRIEDDGWSGEAPEDVRRVFVQTSFGDPIIEKIGKLENLRTLIVYTDTGDKLTEDRVFETLMKLRKLRVLRVHSESFNVFSVPSSICQLKHLRYIAFRFRKLALPSTFSKLYHMQVLDFGPCGNLAFSSVEDMANLINLRQIIIEYPADINFPKIGRMTLLKMLPLYTVRKEEGYGIQELEHLDKLSGRMQIHGLQNVQSKDEAAKAMLANKEELTDLTLHWNDDSCNPDIQADVLEGLCPPMCLPKLRIDELSRHEVPNMDGGRAEWSK |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023970 | OsKeNa_11g0023970.01 | Chr11 | 29270244 | 29271515 | + | NAM | ||
| CDS seq | atgcgcttgacggaactgttgaagaaaattgaaaagctaattgatgatgtagagaagactgttgggttggctaacctgccaagaattgaggtaacaggccaacatgatgctcgtaatcgaggcctttccgatgagccaactatggaagatctgttgtggagctaccaccatcttgatgagccgttgaaccgatgcttgtcttactgcagtattttccccaaaaggcatcggctgcaacgtgacgaaataattaacatgtgggtggcagaagggttcatagaagtatccgatgcaggtgaggacatggaagaaggttgtgcgagatactttgacgaattagtggatgcctcttttctgcaaccaactgagaaaatgagaggaatgctttatgatgttagttacttcacaatgcatgatctggctcatgatttagcagaaaaggtcgccggaagtgatattttgagaattgaggatgatggatggtcaggagaagcccctgaagatgttcgccgtgtttttgttcagacttcctttggagacccaataattgagaagattggcaaactggaaaatctacgcaccctcatcgtttatactgatacaggggacaagctaactgaggacagagtctttgaaaccttgatgaagctaaggaaacttcgggtactgagagtacatagtgaaagtttcaatgtattctcagtcccatcatctatttgtcagctaaagcacctgcgctatatagcttttcggttccgtaagcttgctttacctagcacatttagcaagctttatcatatgcaggttctagattttggtccttgcggaaatttagcattttcatctgttgaagatatggccaacctcatcaacttgcgtcagatcatcatagagtatcctgcagacataaactttccaaagattggcaggatgacattactgaaaatgttaccactctacactgtaaggaaggaagaagggtatgggatacaggagttggagcacttagacaagctctctggtaggatgcagatccacggccttcaaaatgtccaaagcaaagatgaagcagccaaagcaatgctagctaataaggaagagctcacagacctgacactgcattggaatgatgatagctgcaatccagatatacaggcagatgttcttgaaggtctttgccctccgatgtgccttccaaagctgagaatcgacgagctatcacggcatgaagtacccaacatggatggtggacgcgcagaatggtccaaatga
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| Protein seq | MRLTELLKKIEKLIDDVEKTVGLANLPRIEVTGQHDARNRGLSDEPTMEDLLWSYHHLDEPLNRCLSYCSIFPKRHRLQRDEIINMWVAEGFIEVSDAGEDMEEGCARYFDELVDASFLQPTEKMRGMLYDVSYFTMHDLAHDLAEKVAGSDILRIEDDGWSGEAPEDVRRVFVQTSFGDPIIEKIGKLENLRTLIVYTDTGDKLTEDRVFETLMKLRKLRVLRVHSESFNVFSVPSSICQLKHLRYIAFRFRKLALPSTFSKLYHMQVLDFGPCGNLAFSSVEDMANLINLRQIIIEYPADINFPKIGRMTLLKMLPLYTVRKEEGYGIQELEHLDKLSGRMQIHGLQNVQSKDEAAKAMLANKEELTDLTLHWNDDSCNPDIQADVLEGLCPPMCLPKLRIDELSRHEVPNMDGGRAEWSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023970 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023520 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0433700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024240 | SBH | 0.109192 | 0.181694 | 0.367249 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024030 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023540 | SBH | 3.967604 | 3.975069 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023290 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023730 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024110 | SBH | 0.0 | 0.0 | 0.0 |
