Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023460 | OGI:11077650 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:28336876-28338491 | ||||||||
| Gene Symbol | YR2, YR6, YR9, YR10, YR21, YR23, Osh359-2 | ||||||||||
| DNA seq | atgcccaactgggaggagtggtcctttgttGAAgaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcAaaagggggaggaagccccgtcttcaaggtcgtcatggctgctgccttgtttgacgaggttgcaacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggggctccttataagagaagcagaatgcttgaagacggtggaagacctcccgttcctctctggtggccttgcagttgaaggactggagagggtctccaaccttccccaagtgagagagctgtttgtaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctggatgaaggtatgcaggagatctcttcactatgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctgagacccaattaatttagatggtgcaaggtatgtacactaattgcttgggatttttcactggaataaactaatcattgggttgtacattcatgctgctcctctgctcttcacttgtatatatgcagctattttagcatttgatagtctccttagttgttcatgttgtgtgcattgactgattgtttaatgatttatatgatttagttttattttcatttgtcctacatgtaaccatttcactgtggtcaagattttcataaaatggtggatatccatcgaaggacttgaggtagttaggaagaatcattttttcacttttggtacacaaactgcataagtaaaggagacatatgggccaagaaataaatatcatttagttcagatgcagaacagtttacttgcatttagccctcaatgacccaagtgtgttttgtatcgagattatgcatgtacataggagacattgaagggagcacatattatcttgtaaaaacaagtagagacgtcaatttttcatgaaatatttcaactgtgcaatatattaggcctatacaacggtcattttagacttgcaagcgatacaacgcccaattctacagattttcggcctgcagcctgttggcagcaggacattgaacacaaaaggggcagcgcccaacatctgctcctaggccactaaggtttgtttggaaaataaaagccgcctaattgcctttgtatttgttccaattgattaatgttttagttatatccctaaccaataaaataagcagggtacattgccctgcctacatgcttatgtgtagttcatatgtggctttttcttagactaTtttttttcttgatgtctggtaggtttaactccagaaaacatgattgttgcaaaaactgatcacacttgtattttattttccttaactaagttattgaagtaccaaactgcttatatatagccatgcttaatttgtgtgtgcttgtttattttgtaggttgctaatctcgaagatttgggcagtgcaggcactttcttatttatttgttatctttacctagttaccgatctatggaagatttaagaaatcc
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| CDS seq | atgcccaactgggaggagtggtcctttgttGAAgaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcAaaagggggaggaagccccgtcttcaaggtcgtcatggctgctgccttgtttgacgaggttgcaacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggggctccttataagagaagcagaatgcttgaagacggtggaagacctcccgttcctctctggtggccttgcagttgaaggactggagagggtctccaaccttccccaagtgagagagctgtttgtaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctggatgaaggtatgcaggagatctcttcactatgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctga
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| Protein seq | MPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGTAASKQKGEEAPSSRSSWLLPCLTRLQLVGCPKLRALPPQLGQQATNLKGLLIREAECLKTVEDLPFLSGGLAVEGLERVSNLPQVRELFVNECPNLRHVEELGGLEQLWLDEGMQEISSLWVPRLQEQHRQLHGDEHELEVTEWL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023460 | OsKeNa_11g0023460.01 | Chr11 | 28336876 | 28338491 | + | NAM | ||
| CDS seq | atgcccaactgggaggagtggtcctttgttGAAgaagaagaagtgcaggaggaggaagcagctgcagcagccaaggaagggggagaggatggaactgctgcttcgaagcAaaagggggaggaagccccgtcttcaaggtcgtcatggctgctgccttgtttgacgaggttgcaacttgtgggctgccccaagctgagggctctcccaccacagcttggacagcaggccaccaacttgaaggggctccttataagagaagcagaatgcttgaagacggtggaagacctcccgttcctctctggtggccttgcagttgaaggactggagagggtctccaaccttccccaagtgagagagctgtttgtaaatgaatgcccgaatttgaggcatgtcgaggagttgggtggtttggagcagctatggctggatgaaggtatgcaggagatctcttcactatgggtcccaaggcttcaggagcaacaccgccagctccatggagatgagcatgagctggaggtcaccgagtggctctga
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| Protein seq | MPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGTAASKQKGEEAPSSRSSWLLPCLTRLQLVGCPKLRALPPQLGQQATNLKGLLIREAECLKTVEDLPFLSGGLAVEGLERVSNLPQVRELFVNECPNLRHVEELGGLEQLWLDEGMQEISSLWVPRLQEQHRQLHGDEHELEVTEWL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0674400 | SBH | 3.157148 | 3.913529 | 6.933932 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44960 | SBH | 0.100980 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0673600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023530 | SBH | 0.000000 | 2.995102 | 0.126475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023120 | RBH | 0.160988 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022990 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023190 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0410200 | SBH | 0.016715 | 0.3187185 | 0.003874 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023970 | SBH | 0.036124 | 0.004755 | 0.026227 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0429700 | SBH | 0.012926 | 1.070222 | 0.2560875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | SBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022900 | SBH | 0.169465 | 0.0 | 0.076431 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023130 | SBH | 0.000000 | 0.687507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023300 | SBH | 0.434635 | 0.913598 | 2.277780 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023730 | SBH | 1.486182 | 20.188963 | 5.723283 |
