Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0011990 | OGI:11038580 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:13653742-13658670 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catagatccagccattccagcggcagcctctcctccgggctgcacgcgaggaggccgcaccagccactccggtagcctgcccagccaccaggcgcgcagcgcaccgccgcctcctccttcgtcccaccccctccgtcgatgcgcggccgggactcgggagccctgccgggagccgccgggaggtgtcgtcacgcggccgggagtcgggagcgccgcctgtagccattctcgcgccgccgggaggtgtcgtcgcgcggctgtgggagtctgcagccgtcgccgcgccgccgcctagtcctagctctctctccctagctcctccctccacattcccccgccgccaccaccccctctccctctctcaaatctgacgcgcgccaccacatgcttggccaccttgcctacaccaggggagaggcggcgctggcaaggctgaaggcgtacgagggcgtgccgccgccgtacgacaggaccaagcgcatggtcatccccgacgcgctcaagtacttcggatttgcttgtttttttttggatcttttttgtgattattgtaattgtgcgcgggtgattggtctaatggtgtttgtttggtgccgtactgtagggttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggttggctggaactactatggcactaaacatgcttaaaacatacagcggatctggatattaggagtatctgttggaatttggaagtctacacactatgccggttcaggctagctgtgacgggcctaaaccgtcacctctgacggattcagcccctcgtcagagattaatggtcagtgatgactctcctcacctttgacgggtgaaggcccgtcagtggtgaccagcccctgtgacgggcaacgtatagaacccgtcacaggtaactattatctcaaacggcccatttgtttttgagccgtcagtgatgtttagattacaacccgtcacaggtgtgaaaaccctagcaagaaaattagcgcaagctgccatggtggtgctcgctgtcaccgctgctttgctcatcacatgcgcattcatcaccatcacaaaaacttcaaactgatatatcacacatagcaatcattcacaaaaggggatgccaaagaatttatcaatcatcatacaacaatatcatatcattcatagaaggggcacactggctgacacctagagtttatcatcgtcctcatccatgacgaactcctgggcgaggtcgggtagggacgccgaggtccgcgtcgcggtggcctggttgagcagaagctcggatgctgcagacgcaggcggaagcgccacgctcgcggccgctggggaggcggtggaggacctcgaagaggcactcctctgctgctccaccaccaaacagaaatcaagaatcaagaaaccaccattagagcaaaccaaacacctcaaatcaacaacaacaacaagaagaagaagatttaagtaaaaaaaaaaacaaggagaagaaacctcaccgaggtggccggtgggtggggatgtaggaggcggtacctggcggttagatctgtgcgtccccggcttcgtggaggccggatccgatgtctagcagctgagggacgacggtcggtggcggaggtgagggaggcgtcggtggtgttggtaactgggaggcgggggcaggcgtcggcagccggatccggcttcctggcggacagatctggcagccggcagtcaggtggctgcggtgtcgtggacgtggatccggcgccagctgatccggtggcagaggagaaggctgtcggcggtgggggagaggccgggggtcggggaaaggccttgtggctggatccgcgtcccgtacgccagatccggtagtcggtggtcggcagtcgggaggcggaggttgccgcggacaccgtcgggaggcggaggaggtggccgcggacgccggctgttaaggatgaaggcggcgacgggtggtggggtggaggcggcaaccgggaactaggggaggaggcggctggtgagggagatgagaggaggaagatgagagggaagaagatgagtggtgctggggtggtgggtacggggatggggggattttgaagctttttttaagtcatctatgacgggtgcaaggtgataactcgttgagctatctcatctttgacgggttgcagacttaacacccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacacctctgacgggttccattctcgatccgtcacaggtgactagatgcctgtgacggcccgcaaccggatggctcactgatgacggtatcccgtaggacccatgaaaggtgaccctcatcactgaccaacacttatgcccgtcacagatatgccgtcaaaggtgtgaggatctggcgtagtgacaagaagaagaaattcgcattgacagagcaaagcattccaagaacgataataagaatgaatccttctaaggtacaagtatatcgatcttagttgtagtttagctgtacttagctagctgcctagctgtagttcagtctgccgttctgataggtagctaattgccggattatggagtatgacatgcttatttaggtaaacatattgtggtatgatatggagaattatgctgcttttgctctgctgattagtgattagtgccaagttttagctgtcgaacttgtataatttcgaaacccctttgctctgtagctcttaaatctttgcatttcaaaccaactgaagcttgtagtcttagcaatctactgatgtctattttacagatctaagtattttaatataagtatgaatgagtctaaaactatgatgtgctatgtaatattgcagaactcttgagctagaacttattattacctattcatataactaatttatttatttatttaaaatagacaaatcaaagatattactggataataggttccttggtaagtagtgattcccttgatagatctaggtacatatacatactacaacaagattacaattatgtcagtgtgtagactaaatcccaaaaagacgcttctatttaccttaatcctgttttagaaagaagttatgatgttcatgtaaagtcgaaatttgattgcagagtaatatatcttagatacaaaatcttagctttgttctaaataatttgttggaagttacagcggcaaggcataataccaaaatctgtcagcttgacataagattttgtgtactactgtaatatgcatgtatggagtccaggagttgtccaattttatatgtataaacattatgctataaatgatgtgctaatatgccttgattttgcataacctcccagtttctatctttgtttctatgaatatttactatgtaaaaatggtaggtgtcttaactatgtgagctcttgctttcaatgctttacaattaacacataatgttcatttaaatgtttgtatatcaataacctttatttaacttccagctcttattattgcagcaaaatgatgaagaaaacactgaacattttttgttcaagcaaagggtataacagctccattaatgtgcatggagaaaagcaacagttcacttcatatatctgttcaagagtacttctttcggtgtatatataaaatagttccattatatgtgtatggacaaaaaaacactggtccagtaactagatccataagtatgtctgtgtcattcagatggagctctatcaaaagctctgaaggtatgaactactgtcctatttccaaatatgagcagcaatattcgttaaattgataaattttcactttaacatttctatttgtcaattggtccataccatcatggagcaccatggtttcaagatactgacaagttgaaatagggttgtctcgaccaaaatctgaatattcataaattgacaattccaagttcagtgaagttctctgattcttcacttatgtgtgaacaacagattagtagtatttttcctgagacatttgggtagattagtagtattattcctaagacatttgggtagattagtagtattattattcctgggacatatttgggtatacgacatatttcaatttataagtgctgaatgtgatagttgatctaatgcacttgcatttattccgatctcgatcaatatgcaaaattgcaaatcacatcagctcgatactcaataggtccaaatggcagtaccgttccgtgcggcaaagccacgggtacttgctagttatgtattaaaatgagtcctctcgtaatttacttttcagattttacctcagcttcatggttatgctgatggtttttttttgatcgacatgtcatatttatttactttaatttaatcatgtgccctactgcattcagctagctaatacataggagtatattgatggactactctttggaatcttggagacaatataaggtagctctacctatgatccttcagttttgatcctgttttgtgtgtccttttggatttgcagagcaccccatctgctcaaatcatcttacactaaattttgttgtctcacagatgcctaggaggactacattgaggttgttgcagagtatggttggctgagttggacattgaTttttttttttttgctgagttatttgtgggtggacctagtgtggacttagtgaatctagtttgctcttgtggctgcatttgttaagttaacctaggaggctaggaccttattttgatatctaggatctggtggaattgaacctagtttgcaattgtagctggatttattttgctatggtatgtactgatgtgaggatacatgtgaatgggctttgattgtatgtgattgggctttacctgtatgtgtttgggatgataaatggacttgtgctatattgaatgataattgggcctttatgtat
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| CDS seq | atgcttggccaccttgcctacaccaggggagaggcggcgctggcaaggctgaaggcgtacgagggcgtgccgccgccgtacgacaggaccaagcgcatggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggttggctggaactactatggcactaaacatgcttaa |
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| Protein seq | MLGHLAYTRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYGTKHA |
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| Function | 60S ribosomal protein L13a [UniProtKB/Swiss-Prot:O49885] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0011990 | OsKeNa_11g0011990.01 | Chr11 | 13654126 | 13654439 | + | NAM | ||
| CDS seq | atgcttggccaccttgcctacaccaggggagaggcggcgctggcaaggctgaaggcgtacgagggcgtgccgccgccgtacgacaggaccaagcgcatggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggttggctggaactactatggcactaaacatgcttaa
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| Protein seq | MLGHLAYTRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYGTKHA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0011990 | OsKeNa_11g0011990.02 | Chr11 | 13653742 | 13658670 | + | IsoSeq | ||
| CDS seq | atgatgaagaaaacactgaacattttttgttcaagcaaagggtataacagctccattaatgtgcatggagaaaagcaacagttcacttcatatatctgttcaagagtacttctttcggtgtat |
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| Protein seq | MMKKTLNIFCSSKGYNSSINVHGEKQQFTSYICSRVLLSVY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.610367 | 1.215341 | 4.672618 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0425800 | RBH | 3.813341 | 3.627056 | 2.076877 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54890 | SBH | 10.840238 | 11.525134 | 12.415773 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0425800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011970 | RBH | 2.585505 | 3.285172 | 12.124997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034960 | SBH | 0.426596 | 48.806316 | 17.503435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035050 | SBH | 12.409028 | 151.115402 | 48.108536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011660 | RBH | 0.824820 | 0.429153 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034870 | SBH | 46.211365 | 360.600372 | 83.709511 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0203400 | RBH | 0.277998 | 0.7429165 | 0.9132565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011880 | RBH | 1.198803 | 0.000000 | 0.622500 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0213500 | RBH | 9.8520925 | 18.58082 | 26.5184185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012030 | RBH | 0.194470 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012140 | RBH | 0.332107 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011800 | RBH | 4.966465 | 38.969566 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011650 | RBH | 0.834442 | 0.0 | 0.287510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011930 | RBH | 0.321632 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011820 | RBH | 0.264480 | 0.0 | 2.807235 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011810 | RBH | 6.915268 | 10.078356 | 0.000000 |
