Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_11g0001500 OGI:11003640 | 14/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr11:984305-988561
Gene Symbol -
DNA seq

ataaacaaaatgagatttttttttgagtgaagaatataggtatacgataatatataatacattccacaacagaaaatgaatcacacgatctgccgcatgcggctcgcatgcttaacaaactgtggtcgtcatcgtaagctcaccacatgtggctcgcatgcttaactaacggcataattaaatcacttgatgatgacgcatatcggtgttcactatatatactatctactggtaagtatatctttaatatacagtttatcttttattttcaccaatttcaagatgatagggtaaacaacattgaaaaaatcttgtccgcaatagcatagctctatttcgcccttgcattggggtactgctcttctagatggtggtggcgaattcacgcccacaaccagagaattggtgagtgacgcaagagaaaagccacttatacaccagtcgacgacagcggcgcataatgcctcctcccggaatcttaatccaacaccaatgtcgattgcggcggctataattaactttgatatgttatcagccgctataaggccctacagcggctgatagcatatcgaagttaattaaagtcgccgcaatcggcattggtgttggattaagattccgagaggaggcattatgcgccgctatcgtcgactggtgtataagtggcttttctcttgcgtcactcaccaattctctggttgtgggcgtgaattcgccaccaccatctagaagagcagtaccccaatgcaagggcgaaatagagctatgctattgcggacaagatttttttcaatgttgtttaccctatcatcttgaaattggtgaaaataaaagataaactgtatattaaagatatacttaccagtagatagtatatatagcgaacaccgatatacgtcgtcatcaagtgatctaattatgccgttagttatttaagcatgcgagccacatgtggtgggcttatgatggcaaccatagtgaatattgaacaagttggcaactcacgagccatcctctgtgtccttgatgtccatctttgttgagcaccttgactgcaacaggtagtgacttcagaccaaccctgacattctcatctatgtagcccttgtaaacagtcacaaaccctccttcaccaagaaggtagtcagcacggaagcTttttgtgatggtctcaagttcaaacaataagtcaatcacatcgttgtatatggagatgttcttggcatcttcaacttcaattttcctaggtgttgaaggatcactcatatctgatgagatgcgggtgtgcttcctctctgcaacagcattcttgacaggatgttgtagcaagtggagctgctgaactgagaagatggcatttcaacaacaaaaaagAaaaaaatagtcaaggtaaaaacgaattaaggttaccataaattcttatacataagataaaaagcatgttttttttttcttcatattgaattttcagcattcacggagatggttggatgaaagagagctaatcatgttgaaatacgtttaggaaagctataatcacaaactaacaagagaactattggaaacgagcgttggcgattcctagcaattataaaatggtattctacctaaaaatactgtaaaaaagtacatacatgggcaagttgattaggtcatgcacaatgtagaaataaggagggtcttaagccccttgagaagcatttatacattgtggaggtgatccttctaggaggcttttggatgagccgtccttatggctaaggaccggccacaaggattaaaaaaaattagttctctctccggttctgttgattgccgccatggaaacgaaacaaagaggaagaaggcccggggaggggaagtattgagcagtcgagcagctgtgtggagttgtgctgcaagccctaccgccgccggatttcgcccgcaggccccaccgccacaaccggagatctgtcgccgaagccaaccgcgagcgccacagacgccgtccgagagggccgctgcggatccgcgagcgcgagctccaccggcgccgtacacgagcgcctccttggatccgctcccgtgaatgccgccgccgccgccgccgccaccatcgcggatccgctcgtgacttgccaccttcgtcgtccgcgagcgctgcgccgacgcatcctcctccgatgagcgcctccacggctgttggatccgcgggccaccagccgcgagcaccaccgccatcacggatccacgagcgtgagctgccggcggcgtcgtcatcggtggccggtgggtgaggagaagccgaaaggatggggaaattttgggtggctgccggctagagagagaatagggtggttgggatggtaaggtactttattaaaatgtggggcccaccttagagcatcctcatcatttcatctaaatttgaacctccatattcctatttatatttagatggtcatctaaaaatattcctcctccatatatttacctactccaacaaatcatccatatcacattattctatattttactaatatttttaacaacccagtacccatatatttctatcaatcttttttaagagctatatatttcaatttaactgtatagttaccactttgagaatacagttttaatcctctgtttagaaacacacgagagacgagacaccgccagggaacagaccttatcctctgctaggaaaaaaaagaatgaaaaacaaaactgctagatatgcatcgctcctcgttgattccaaccgagaggcgaaaggcagacggtgcgagcggagcgggtgatgcggcgggacgacagggcagggcggcgcgagtagagtcacgatggagcagcgatacagcttggctggcccgacggcgaagcgatacgcgggtggcggcgtagcgcaggtcgcggtcggcgcggacggcggggcactgtgagcggcggcgcagcgcgggtcgcagtctgcgaggatggcggggcctccactccggcgatcttcaccgcccgatccggtatgcacatcctctctctctctcttccctgttgcccacgagtccggatggtggcgcgagtcgtggaaactgggcagttgagggatggagtgagcagagagaaataccaaatttggctggacaggactcggtttaaaggatatccaaaaggagcatgatttttcacttccatacactaaacaaaggatgggtggccgaggccggatagaagatctgctgggcatactcttaataccccttcctctcatatactccaacttgcaatatgctcagtgggacccacctcgtgcccaccataatgcctactccctcgttccaaaaagacaaaagacgtatctactgtttaaccgtccattttatataaaatataagtccgttttatataaaatatttttatgattagtatttttattattgttatatgataaaacatgaataatattttatgtctgacttatttttaaatttttttcatatttttttaaataaaacagacggacaaactttttttttttagagaaagttattttttacccggcctctatatccaaccggatatatactgccattgaaatagggaatttagccccgcaaacaacccaatctgaaattcgctccataggagatttgaactcaagatcttgggtactactcaggtcactataactcaggatggtcaaacgttagatacgaaaattcaggaattgagTtttttttttttttttaccgagggagtgctggttgtgatcacagttgcatgcaataaaaaagggctctaaatttgcttaaacaatgcagcaaaccgcaagaagtgattatgtttttccaacttgcaggatcataactctattttctgttaaactgaaagtcgacagtgcctcagtggagcaaagagcacagaaattgcagcactattgagggaagtgcctgtaaattgtcccgatgaacacgatgaagcagaaatccccaatgaacccaccaaccaagagatcaggggaacccagaaataaccaccaagatcaatttttttttgatgaaattcagatcatccaacccgagatcccatcccaacaaccagcatcccaaaaaaaaacaatcaccaccccgaatcgggaaatccccaaaaatcaatccaataaaaaggaggaagtgtagaataccttgggcgtgcgccgcgacgacggcattctcctctcgcgtcccgcagttgcccatctatctcctcctcctcctggtgtttttttatggtggtggt

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CDS seq

atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagttgaagatgccaagaacatctccatatacaacgatgtgattgacttattgtttgaacttgagaccatcacaaaaAgcttccgtgctgactaccttcttggtgaaggagggtttgtgactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagaggatggctcgtgagttgccaacttgttcaatattcactatggttgccatcataa

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Protein seq

MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS

Function Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_11g0001500 OsKeNa_11g0001500.01 Chr11 984305 988553 - NAM
CDS seq

atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagttgaagatgccaagaacatctccatatacaacgatgtgattgacttattgtttgaacttgagaccatcacaaaaAgcttccgtgctgactaccttcttggtgaaggagggtttgtgactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagaggatggctcgtgagttgccaacttgttcaatattcactatggttgccatcataa

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Protein seq

MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS

Gene Transcript Chromosome Start End Strand Source
OsKeNa_11g0001500 OsKeNa_11g0001500.02 Chr11 984305 988561 - IsoSeq
CDS seq

caccaccataaaaaaacaccaggaggaggaggagatagatgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcag

Protein seq

HHHKKTPGGGGDRWATAGRERRMPSSRRTPKFSSSTCYNILSRMLLQRGSTPASHQ

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.126868 3.424642 2.961402

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0121500 RBH 0.350846 0.396164 5.841673
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g02840 RBH 0.235768 0.264777 1.280283
Nipponbare | IRGSP 1.0 | RAP-db Os11g0121500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0001460 RBH 0.0 4.031069 14.004709
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0001550 SBH 0.281947 4.379057 2.572294
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0001480 RBH 0.000000 0.000000 17.420183
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0001470 RBH 0.0 0.446840 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0001450 SBH 3.108166 23.404846 21.478722
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0018600 SBH 15.4389695 10.3462175 37.951424
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0001450 RBH 0.836219 1.214485 4.512013
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0020200 SBH 7.8413375 1.8862965 33.15073
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0001330 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0001460 SBH 0.187752 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0001450 SBH 0.000000 45.781345 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0001440 RBH 0.000000 0.0 2.603194
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0001500 RBH 0.0 5.978560 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G001440 SBH 0.0 7.446180 5.139292
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0001430 SBH 0.0 22.798973 8.694711
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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