Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKeNa_11g0001500 | OGI:11003640 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:984305-988561 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ataaacaaaatgagatttttttttgagtgaagaatataggtatacgataatatataatacattccacaacagaaaatgaatcacacgatctgccgcatgcggctcgcatgcttaacaaactgtggtcgtcatcgtaagctcaccacatgtggctcgcatgcttaactaacggcataattaaatcacttgatgatgacgcatatcggtgttcactatatatactatctactggtaagtatatctttaatatacagtttatcttttattttcaccaatttcaagatgatagggtaaacaacattgaaaaaatcttgtccgcaatagcatagctctatttcgcccttgcattggggtactgctcttctagatggtggtggcgaattcacgcccacaaccagagaattggtgagtgacgcaagagaaaagccacttatacaccagtcgacgacagcggcgcataatgcctcctcccggaatcttaatccaacaccaatgtcgattgcggcggctataattaactttgatatgttatcagccgctataaggccctacagcggctgatagcatatcgaagttaattaaagtcgccgcaatcggcattggtgttggattaagattccgagaggaggcattatgcgccgctatcgtcgactggtgtataagtggcttttctcttgcgtcactcaccaattctctggttgtgggcgtgaattcgccaccaccatctagaagagcagtaccccaatgcaagggcgaaatagagctatgctattgcggacaagatttttttcaatgttgtttaccctatcatcttgaaattggtgaaaataaaagataaactgtatattaaagatatacttaccagtagatagtatatatagcgaacaccgatatacgtcgtcatcaagtgatctaattatgccgttagttatttaagcatgcgagccacatgtggtgggcttatgatggcaaccatagtgaatattgaacaagttggcaactcacgagccatcctctgtgtccttgatgtccatctttgttgagcaccttgactgcaacaggtagtgacttcagaccaaccctgacattctcatctatgtagcccttgtaaacagtcacaaaccctccttcaccaagaaggtagtcagcacggaagcTttttgtgatggtctcaagttcaaacaataagtcaatcacatcgttgtatatggagatgttcttggcatcttcaacttcaattttcctaggtgttgaaggatcactcatatctgatgagatgcgggtgtgcttcctctctgcaacagcattcttgacaggatgttgtagcaagtggagctgctgaactgagaagatggcatttcaacaacaaaaaagAaaaaaatagtcaaggtaaaaacgaattaaggttaccataaattcttatacataagataaaaagcatgttttttttttcttcatattgaattttcagcattcacggagatggttggatgaaagagagctaatcatgttgaaatacgtttaggaaagctataatcacaaactaacaagagaactattggaaacgagcgttggcgattcctagcaattataaaatggtattctacctaaaaatactgtaaaaaagtacatacatgggcaagttgattaggtcatgcacaatgtagaaataaggagggtcttaagccccttgagaagcatttatacattgtggaggtgatccttctaggaggcttttggatgagccgtccttatggctaaggaccggccacaaggattaaaaaaaattagttctctctccggttctgttgattgccgccatggaaacgaaacaaagaggaagaaggcccggggaggggaagtattgagcagtcgagcagctgtgtggagttgtgctgcaagccctaccgccgccggatttcgcccgcaggccccaccgccacaaccggagatctgtcgccgaagccaaccgcgagcgccacagacgccgtccgagagggccgctgcggatccgcgagcgcgagctccaccggcgccgtacacgagcgcctccttggatccgctcccgtgaatgccgccgccgccgccgccgccaccatcgcggatccgctcgtgacttgccaccttcgtcgtccgcgagcgctgcgccgacgcatcctcctccgatgagcgcctccacggctgttggatccgcgggccaccagccgcgagcaccaccgccatcacggatccacgagcgtgagctgccggcggcgtcgtcatcggtggccggtgggtgaggagaagccgaaaggatggggaaattttgggtggctgccggctagagagagaatagggtggttgggatggtaaggtactttattaaaatgtggggcccaccttagagcatcctcatcatttcatctaaatttgaacctccatattcctatttatatttagatggtcatctaaaaatattcctcctccatatatttacctactccaacaaatcatccatatcacattattctatattttactaatatttttaacaacccagtacccatatatttctatcaatcttttttaagagctatatatttcaatttaactgtatagttaccactttgagaatacagttttaatcctctgtttagaaacacacgagagacgagacaccgccagggaacagaccttatcctctgctaggaaaaaaaagaatgaaaaacaaaactgctagatatgcatcgctcctcgttgattccaaccgagaggcgaaaggcagacggtgcgagcggagcgggtgatgcggcgggacgacagggcagggcggcgcgagtagagtcacgatggagcagcgatacagcttggctggcccgacggcgaagcgatacgcgggtggcggcgtagcgcaggtcgcggtcggcgcggacggcggggcactgtgagcggcggcgcagcgcgggtcgcagtctgcgaggatggcggggcctccactccggcgatcttcaccgcccgatccggtatgcacatcctctctctctctcttccctgttgcccacgagtccggatggtggcgcgagtcgtggaaactgggcagttgagggatggagtgagcagagagaaataccaaatttggctggacaggactcggtttaaaggatatccaaaaggagcatgatttttcacttccatacactaaacaaaggatgggtggccgaggccggatagaagatctgctgggcatactcttaataccccttcctctcatatactccaacttgcaatatgctcagtgggacccacctcgtgcccaccataatgcctactccctcgttccaaaaagacaaaagacgtatctactgtttaaccgtccattttatataaaatataagtccgttttatataaaatatttttatgattagtatttttattattgttatatgataaaacatgaataatattttatgtctgacttatttttaaatttttttcatatttttttaaataaaacagacggacaaactttttttttttagagaaagttattttttacccggcctctatatccaaccggatatatactgccattgaaatagggaatttagccccgcaaacaacccaatctgaaattcgctccataggagatttgaactcaagatcttgggtactactcaggtcactataactcaggatggtcaaacgttagatacgaaaattcaggaattgagTtttttttttttttttaccgagggagtgctggttgtgatcacagttgcatgcaataaaaaagggctctaaatttgcttaaacaatgcagcaaaccgcaagaagtgattatgtttttccaacttgcaggatcataactctattttctgttaaactgaaagtcgacagtgcctcagtggagcaaagagcacagaaattgcagcactattgagggaagtgcctgtaaattgtcccgatgaacacgatgaagcagaaatccccaatgaacccaccaaccaagagatcaggggaacccagaaataaccaccaagatcaatttttttttgatgaaattcagatcatccaacccgagatcccatcccaacaaccagcatcccaaaaaaaaacaatcaccaccccgaatcgggaaatccccaaaaatcaatccaataaaaaggaggaagtgtagaataccttgggcgtgcgccgcgacgacggcattctcctctcgcgtcccgcagttgcccatctatctcctcctcctcctggtgtttttttatggtggtggt
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CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagttgaagatgccaagaacatctccatatacaacgatgtgattgacttattgtttgaacttgagaccatcacaaaaAgcttccgtgctgactaccttcttggtgaaggagggtttgtgactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagaggatggctcgtgagttgccaacttgttcaatattcactatggttgccatcataa
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Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS |
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Function | Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_11g0001500 | OsKeNa_11g0001500.01 | Chr11 | 984305 | 988553 | - | NAM | ||
CDS seq | atgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcagatatgagtgatccttcaacacctaggaaaattgaagttgaagatgccaagaacatctccatatacaacgatgtgattgacttattgtttgaacttgagaccatcacaaaaAgcttccgtgctgactaccttcttggtgaaggagggtttgtgactgtttacaagggctacatagatgagaatgtcagggttggtctgaagtcactacctgttgcagtcaaggtgctcaacaaagatggacatcaaggacacagaggatggctcgtgagttgccaacttgttcaatattcactatggttgccatcataa
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Protein seq | MGNCGTREENAVVAAHAQVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_11g0001500 | OsKeNa_11g0001500.02 | Chr11 | 984305 | 988561 | - | IsoSeq | ||
CDS seq | caccaccataaaaaaacaccaggaggaggaggagatagatgggcaactgcgggacgcgagaggagaatgccgtcgtcgcggcgcacgcccaagttcagcagctccacttgctacaacatcctgtcaagaatgctgttgcagagaggaagcacacccgcatctcatcag |
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Protein seq | HHHKKTPGGGGDRWATAGRERRMPSSRRTPKFSSSTCYNILSRMLLQRGSTPASHQ |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.126868 | 3.424642 | 2.961402 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0121500 | RBH | 0.350846 | 0.396164 | 5.841673 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02840 | RBH | 0.235768 | 0.264777 | 1.280283 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0121500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001460 | RBH | 0.0 | 4.031069 | 14.004709 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001550 | SBH | 0.281947 | 4.379057 | 2.572294 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001480 | RBH | 0.000000 | 0.000000 | 17.420183 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001470 | RBH | 0.0 | 0.446840 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001450 | SBH | 3.108166 | 23.404846 | 21.478722 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0018600 | SBH | 15.4389695 | 10.3462175 | 37.951424 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001450 | RBH | 0.836219 | 1.214485 | 4.512013 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0020200 | SBH | 7.8413375 | 1.8862965 | 33.15073 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001330 | RBH | 0.000000 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001460 | SBH | 0.187752 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001450 | SBH | 0.000000 | 45.781345 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001440 | RBH | 0.000000 | 0.0 | 2.603194 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001500 | RBH | 0.0 | 5.978560 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001440 | SBH | 0.0 | 7.446180 | 5.139292 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001430 | SBH | 0.0 | 22.798973 | 8.694711 |