Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g02840 | OGI:11003640 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:959796-961058 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGATGGCAACCATAGTGAATATTGAACAAGTTGGCAACTCACGAGCCATCCTCTGTGTCCTTGATGTCCATCTTTGTTGAGCACCTTGACTGCAACAGGTAGTGACTTCAGACCAACCCTGACATTCTCATCTATGTAGCCCTTGTAAACAGTCACAAACCCTCCTTCACCAAGAAGGTAGTCAGCACGGAAGCTTTTTGTGATGGTCTCAAGTTCAAACAATAAGTCAATCACATCGTTGTATATGGAGATGTTCTTGGCATCTTCAACTTCAATTTTCCTAGGTGTTGAAGGATCACTCATATCTGATGAGATGCGGGTGTGCTTCCTCTCTGCAACAGCATTCTTGACAGGATGTTGTAGCAAGTGGAGCTGCTGAACTGAGAAGATGGCATTTCAACAACAAAAAAGAAAAAAATAGTCAAGGTAAAAACGAATTAAGGTTACCATAAATTCTTATACATAAGATAAAAAGCATGTTTTTTTTTTCTTCATATTGAATTTTCAGCATTCACGGAGATGGTTGGATGAAAGAGAGCTAATCATGTTGAAATACGTTTAGGAAAGCTATAATCACAAACTAACAAGAGAACTATTGGAAACGAGCGTTGGCGATTCCTAGCAATTATAAAATGGTATTCTACCTAAAAATACTGTAAAAAAGTACATACATGGGCAAGTTGATTAGGTCATGCACAATGTAGAAATAAGGAGGGTCTTAAGCCCCTTGAGAAGCATTTATACATTGTGGAGGTGATCCTTCTAGGAGGCTTTTGGATGAGCCGTCCTTATGGCTAAGGACCGGCCACAAGGATTAAAAAAAATTAGTTCTCTCTCCGGTTCTGTTGATTGCCGCCATGGAAACGAAACAAAGAGGAAGAAGGCCCGGGGAGGGGAAGTATTGAGCAGTCGAGCAGCTGTGTGGAGTTGTGCTGCAAGCCCTACCGCCGCCGGATTTCGCCCGCAGGCCCCACCGCCACAACCGGAGATCTGTCGCCGAAGCCAACCGCGAGCGCCACAGACGCCGTCCGAGAGGGCCGCTGCGGATCCGCGAGCGCGAGCTCCACCGGCGCCGTACACGAGCGCCTCCTTGGATCCGCTCCCGTGAATGCCGCCGCCGCCGCCGCCGCCACCATCGCGGATCCGCTCGTGACTTGCCACCTTCGTCGTCCGCGAGCGCTGCGCCGACGCATCCTCCTCCGATGAGCGCCTCCACGGCTGTTGGATCCGCGGGCCACCAGCCGCGAGCACCACCGCCAT
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| CDS seq | ATGGCGGTGGTGCTCGCGGCTGGTGGCCCGCGGATCCAACAGCCGTGGAGGCGCTCATCGGAGGAGGATGCGTCGGCGCAGCGCTCGCGGACGACGAAGGTGGCAAGTCACGAGCGGATCCGCGATGGTGGCGGCGGCGGCGGCGGCGGCATTCACGGGAGCGGATCCAAGGAGGCGCTCGTGTACGGCGCCGGTGGAGCTCGCGCTCGCGGATCCGCAGCGGCCCTCTCGGACGGCGTCTGTGGCGCTCGCGTTCAGCAGCTCCACTTGCTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAA
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| Protein seq | MAVVLAAGGPRIQQPWRRSSEEDASAQRSRTTKVASHERIRDGGGGGGGGIHGSGSKEALVYGAGGARARGSAAALSDGVCGARVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS |
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| Function | Probable serine/threonine-protein kinase PBL8 [UniProtKB/Swiss-Prot:Q8GXZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g02840 | LOC_Os11g02840.1 | Chr11 | 959796 | 961058 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGTGGTGCTCGCGGCTGGTGGCCCGCGGATCCAACAGCCGTGGAGGCGCTCATCGGAGGAGGATGCGTCGGCGCAGCGCTCGCGGACGACGAAGGTGGCAAGTCACGAGCGGATCCGCGATGGTGGCGGCGGCGGCGGCGGCGGCATTCACGGGAGCGGATCCAAGGAGGCGCTCGTGTACGGCGCCGGTGGAGCTCGCGCTCGCGGATCCGCAGCGGCCCTCTCGGACGGCGTCTGTGGCGCTCGCGTTCAGCAGCTCCACTTGCTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAA
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| Protein seq | MAVVLAAGGPRIQQPWRRSSEEDASAQRSRTTKVASHERIRDGGGGGGGGIHGSGSKEALVYGAGGARARGSAAALSDGVCGARVQQLHLLQHPVKNAVAERKHTRISSDMSDPSTPRKIEVEDAKNISIYNDVIDLLFELETITKSFRADYLLGEGGFVTVYKGYIDENVRVGLKSLPVAVKVLNKDGHQGHRGWLVSCQLVQYSLWLPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.235768 | 0.264777 | 1.280283 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0121500 | RBH | 0.350846 | 0.396164 | 5.841673 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02810 | SBH | 1.026655 | 0.959549 | 0.980003 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0121500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001460 | RBH | 0.0 | 4.031069 | 14.004709 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001500 | RBH | 0.126868 | 3.424642 | 2.961402 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001480 | RBH | 0.000000 | 0.000000 | 17.420183 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001470 | RBH | 0.0 | 0.446840 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001460 | RBH | 12.682381 | 24.412222 | 28.514517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0018600 | SBH | 15.4389695 | 10.3462175 | 37.951424 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001450 | RBH | 0.836219 | 1.214485 | 4.512013 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0020200 | SBH | 7.8413375 | 1.8862965 | 33.15073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001330 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001470 | RBH | 1.060897 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001460 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001440 | RBH | 0.000000 | 0.0 | 2.603194 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001500 | RBH | 0.0 | 5.978560 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001450 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001440 | RBH | 0.000000 | 31.072472 | 25.008717 |
