Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0005560 | OGI:10024430 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:8161163-8162761 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgccgactacgacaaaggtatcgcccctccttttttttgttggtggatgtgtttgatctcaatcaccaaaaggtgttagggtgctggaacttaattagaaaggagtattgaataaacaagttgtccaaattctacatccggctttcttcagtaaaaaaaaggaatcaaatatgacaagaaccttgggaaaaatatctataagtatatgtaggtacccacatatatcagcctaatacatatatgtatcatgcttagtacaacaaataccagagctaataggtattatacgtgatacctaggtatcagactgcgtactcatacatgttaaaattcagacccacatataccatacttagtacacataggtatcaaagtggatatgtacttgatctgctacccacttgtatcatgctagatagtttacgatacttagtagtacacataggtatcaaagtggatatgtacttgatctactacccacatgtatcatgctagatactttatgatattttcgaggtactattacatatagtcatattttgggatggaaaaaatatcatactataagatagtgaggcatcagcccatgccactgagtctagctataacaacagcatctcaaatgactaagcataccgttatagagaagtttatagttatgtgcaatcaaaaggacaggcattcataatctaggggtgtgtgagtgaggagcacttgtcatgtcacccatggcaaatgcatgcatgcacgtacattaagttggtgaggagaactagctactggagtagtagttagctagtgtgcgtgaattgcttcccctcaaaaaagatgtacagtatgcacgcaagctgaagtgcgtccaccatgcgcactagggctgaggggtccgactaataattatgtcgttccaacggtatgccgtgggttagcaacattatttatctactttcaggccatttgtcatgctgcagcttgcgctgttgcttcactgatcaagtcattgtatgtggatttcgttgtgccgaacacagccggagtgcttgtggacaaggtttgcgccgctggccgattaaaaggtgttgcacagtttcgcatcaggcatcaagttgaaaggataaatagctgcatgatggtgggtcggtcagcgcaaaacatagtaccaattctcttctccttcatcaagtactgtgtaattacggttgcctctgccctccatgacattcctcggtcgcagacattagagatggcctatccatacaagcccttggggagtatctggtgctttgagatatggtcgcaagaatctccctcgattctacgagcagggacgtggttgtatggaaggcggcgtcaaatggcgagttctctgtgcgaacagctagcctactcgctactgtcgatcggaaggacggcgtgcccgcttggcaggatcatctggaagtctcttgtgctggtgagacgcaagttctttatgttccttgcagcacgcagcgcttgcctaactgcagacaacctgcagcgccgtgggtggcacctcgcgctagtataccacctctactcgaacgacggcgagacttgccaacttatcctttag
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| CDS seq | atggctgccgactacgacaaagcttgcgctgttgcttcactgatcaagtcattgtatgtggatttcgttgtgccgaacacagccggagtgcttgtggacaaggtttgcgccgctggccgattaaaaggtgttgcacagtttcgcatcaggcatcaagttgaaaggataaatagctgcatgatggtgggtcggtcagcgcaaaacatagtaccaattctcttctccttcatcaagtactgtgtaattacggttgcctctgccctccatgacattcctcggtcgcagacattagagatggcctatccatacaagcccttggggagtatctggtgctttgagatatggtcgcaagaatctccctcgattctacgagcagggacgtggttgtatggaaggcggcgtcaaatggcgagttctctgtgcgaacagctagcctactcgctactgtcgatcggaaggacggcgtgcccgcttggcaggatcatctggaagtctcttgtgctggtgagacgcaagttctttatgttccttgcagcacgcagcgcttgcctaactgcagacaacctgcagcgccgtgggtggcacctcgcgctagtataccacctctactcgaacgacggcgagacttgccaacttatcctttag
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| Protein seq | MAADYDKACAVASLIKSLYVDFVVPNTAGVLVDKVCAAGRLKGVAQFRIRHQVERINSCMMVGRSAQNIVPILFSFIKYCVITVASALHDIPRSQTLEMAYPYKPLGSIWCFEIWSQESPSILRAGTWLYGRRRQMASSLCEQLAYSLLSIGRTACPLGRIIWKSLVLVRRKFFMFLAARSACLTADNLQRRGWHLALVYHLYSNDGETCQLIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0005560 | OsKeNa_10g0005560.01 | Chr10 | 8161163 | 8162761 | + | NAM | ||
| CDS seq | atggctgccgactacgacaaagcttgcgctgttgcttcactgatcaagtcattgtatgtggatttcgttgtgccgaacacagccggagtgcttgtggacaaggtttgcgccgctggccgattaaaaggtgttgcacagtttcgcatcaggcatcaagttgaaaggataaatagctgcatgatggtgggtcggtcagcgcaaaacatagtaccaattctcttctccttcatcaagtactgtgtaattacggttgcctctgccctccatgacattcctcggtcgcagacattagagatggcctatccatacaagcccttggggagtatctggtgctttgagatatggtcgcaagaatctccctcgattctacgagcagggacgtggttgtatggaaggcggcgtcaaatggcgagttctctgtgcgaacagctagcctactcgctactgtcgatcggaaggacggcgtgcccgcttggcaggatcatctggaagtctcttgtgctggtgagacgcaagttctttatgttccttgcagcacgcagcgcttgcctaactgcagacaacctgcagcgccgtgggtggcacctcgcgctagtataccacctctactcgaacgacggcgagacttgccaacttatcctttag
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| Protein seq | MAADYDKACAVASLIKSLYVDFVVPNTAGVLVDKVCAAGRLKGVAQFRIRHQVERINSCMMVGRSAQNIVPILFSFIKYCVITVASALHDIPRSQTLEMAYPYKPLGSIWCFEIWSQESPSILRAGTWLYGRRRQMASSLCEQLAYSLLSIGRTACPLGRIIWKSLVLVRRKFFMFLAARSACLTADNLQRRGWHLALVYHLYSNDGETCQLIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g13660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005500 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003070 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003070 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003340 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005710 | RBH | 0.0 | 0.0 | 0.0 |
