Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0015910 | OGI:09057350 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:20105796-20112183 | ||||||||
| Gene Symbol | MADS24, OsMADS24, MADS8, OsMADS8, OsMADS8/24 | ||||||||||
| DNA seq | CCTCCTCGCCTTAGCTTTCCCCTCTCTTTCGCTTCGCGAGATTGGTTGATTCATCTCGCGATTGATCGAGCTCGAGCGGCGGTGAGGTGAGGTGGAGGAGGAGGAGGAGGAGGAGATCGGGATGGGGAGAGGGAGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACAGGCAGGTGACGTTCGCGAAGCGGAGGAATGGGCTGCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGGTATATATACATGGACGCACTGGGCGCGCGCCTCGATCTGCTATAGCTAGATCGGTAGCTGCTTGCAACGTAGCTAGCTAGGGTTTCTTGCGCGCGCCTGCGCCTCCAGATCTGGAGCGCACGATGGTTTTGTGAACTTCTTGGTGGCGATTTTGCGGGGATCTGGgggctgcacatggtggatctgcgagtgtgctcgtgttttggtgagttttgggagggtttgggagaaggaagttggtggaattctgtgggaataattagggtttttgttcgttcgatcgggtgctagctagcgtaatagggagtggtgaaatacgtagatctgagggtttctgatcccgtggtagtagtggttttgagatggcgcgcttaatggttttgagtttggtttaattgcgattaatttatgtgcatgcatgggatgggacattcaggatttaagcctggatcagcaagtcgatttttacggagaaaattaatcgttggaagcttcgaatcttaattttatcgatctcctaatggagggtatgcgagtttcgaattcccttgggatctgtttttttcctcaatttttagttttttgaggggcaaTtttttttagggtatatatgatttttttttgggggggggggggtgtgtgaagggatcatgcatatcattagccatgtaccggatgtgtgtctaaacaaacgttcactgcatgaattccacggtttggaggcagcataccttacaagatttgggggtttcacttaagattttgtctctttgtttttttaagggatggccgcgggggagtattgtttttcaagtgagttatggttgcatcattaaaggcaacatcaataaatataaagtctgtttctcctgagataagtatatgaaaaatcatatactactatatatataattgtctttcagaaacacagagcgtctgattggctaggcataattcacaagccgcatataagctagttgaattgattttgaattagaaaacattttttttcggggggaagaaaacatttggtattgtgtttagagataaacaattagttagggtagataagtcaggcattcatgagcttcatttcatatttgaatcatacattttccaaactttagaaggttaaattttcttgctcattgtattgcactgatcattttaataatatcttctatagtgaatattacatcattatatattttagataatgattacattattatatgctccgttgcagaaaaaaccaacttttttgccaaacctggacatatataggctatgtccagatttatagctagaagttagggcctcatcttttaccctatgaattataagccaatatcaaattttgaatttcgaaacttgatttagaagttgatttttaatgttttgtcaatgtagattgtttttcagcattaacttttaattcgctaaagacacatatacaattttactcacaaattatattttggttgctaataagccgttatggcttataatcagccgtaagtatatggggactttagcattctttttctttttttatggagggagtacatgcttgccaatttttatagttatgtttaaatggtttccattatacctaagttactaaattaaaattaatacgcctataaaattctaacattaaatatattcacaaataagagtacatgatttcattgaccagggaattcaatttggatatggggtgagtgaaacatccctcctctgctcctcggaagaaatcctgcaagggagtacacaatattcctaggactcacttgagtatctgcagggtacagttagtgacagctttcgattgtcattcgattggtctcctcagctctcgtagctgagctgtcagtacagaagattggtcttcatcagatgtctcttctagttctagctagagctagttcagtggagtattttatgccgacaaattgatactcaacgtgtactgtagatccttttcagaaatctgaattcacgacttgtttaaacaaaggctgtgtttggatccaaacttcagtccttttccattacatcaacctgtcatatacacacaacattttagtcatatcatctccaatttcaaccaaaatctaaactttgcgttgaactaaacacagccaaaaggtcactaaattgacgcggtagaggggggggggtgagcattatagctgtagtagtagtctgcgtgaagttatgccatttcattgtgtgtcgtctgaacttgatatctctctttaaagagtgtactccattttctttacaaaaagtggcctctaggttgatatcatggacatatataaaattataaatcaacttgaaactaccgatgcaagaattaagataaaacgttattgtttcttagaaattgtctccaattatgcaagcaccttcatccgtgtcatggagctaatgttcatgttttgtgagaaacaagatttttcatctactaattaatcgatgtggtccccggaaaagaatgtgccctagattgttagtatttagttatgggcgaactatatatgttcctttatttcgtttttccataaacatagccatttgtgtttttgaaacttgcagcatgaccagaactttggaaagataccaaaaattcagttatggtgggccagatactgcaatacagaacaaggaaaatgaggttactagattctattaatatattttaatttttagtgagttatgacaagcttttatggatttaagttgatgcatagactagctttgtgttctgattaatcgatctgtgtctcactggataatacttcaacaattcgattcatgcagtttaattgattgatcctagatatgctgcttttagtattatcattaattaccaactatatacacgtgttgaatagtacaattaaaaatgaagtcttaatttaatatattcgctgtgcttcttaatgtatgtgatgttgctacaagactcaaaatttaatgaaaaatgagagcactgcaaaaggttgcatatgaaagagtgctataactagaatgagtattgttgttgtgtttccacatgtaataacactgatttacaactctaatttgtgctagctgaaatgtctagtatgtagatctgaatataaaacagaaaagctcctagtcactggttattgaccatgatatgatagatggattcatgaattaatatcactgttttctaataaattgttcattcataagcctaattttgcatgtgaaattatattattttgttttcacatagaatctctaaattgtttcctatttctttgtactgaagttaaatttatttttcagttagtgcaaagcagccgcaatgagtacctcaaactgaaggcacgggtggaaaatttacagaggacccaaaggtaatatcaggcttccacttatgagttcaattttatcaaagacgaaatggagcacagttaattggtttcattcatatatatgcaaagtagataaattattgtgtattggggcaagaacaattatgtgtacactagatactttttggccatttgggtgaaaaaaaaaactatattgcatggaaaaaacacatatgactagtgttaacaagagtgaagtaatatatgtgaaccaatgaaggtcctaccgccgtctctattatatagggtttacaagtggtaaaacagtaatctcagggagaactagcttagagaattagatgcgtgcagtagtatatactgaagttgcttagagaattagatgcatgcatcaatcacagtgtaaaatatacagaactaaggccccgtttagattccaacttttttttcaaacttttaactttttcgtcacatcgaattttcctacacacacaaacttccaacttttttgttcacatcgttccaatttcttcaaactttcaattttagtgtggaactaaatacagcctaacttagtagatctttctgttgacaattacaggaatcttcttggtgaagatcttgggacacttggcataaaagagctagagcagcttgagaaacaacttgattcatccttgaggcacattagatccacaagggtaatttgttaactgtttctcacatatgtttcagaaatgttgaaaaaaatttaactctaatcttgttgcagacacagcatatgcttgatcagctcactgatctccagaggagggtacaagcttgacataaaacttaccaactatgtatttcaggcaagaaaatttattatttccaaaactaactttatatacctaaatcattttcaggaacaaatgttgtgtgaagcaaataagtgcctcagaagaaaagtaagtttaattccttgtcccgtttaagtttcatgcatttacttgatcttaagattctgcatgaactaagtatgtggttttaaaagtaatttatacacttcacttttatgtgtgcttgttcaaaatcaaagccccgcatccatgtagtactaaatttaatctgatcaggaattcaatgtgtagatgttaacatcagtgtttagttagcactttatatattccttccacataaacttacaaacatgtgaacatataaaatatggtttgtaagggcgtataacagaaactggacaagtttgtgtacgttgatgcatattagtttgtaggatgaattgtatatattacaaaagaacatttggtattggttatttctacataacgaatacgtacatgaagcttcgtagacagcatattacttcaactgcgcatattaattaacataaggatctctcacacgtaagcaatgcatattaacaattgatcaagacgaggtcacactgttttcggttgcgaTttaggcatttaggtccgttttcctggcatctcttcctcggatatatatatatctcctggctaacgcctgcttacgtagctctgtgaaataaccaaaatgatgctgtgaaatgaaaaaaaaaaacacaagtgagaaaagaataacgagcactactaatgtttgattcgtttgcgaggaaaagctggaggagagcaaccagttgcatggacaagtgtgggagcacggcgccaccctactcggctacgagcggcagtcgcctcatgccgtccagcaggtgccaccgcacggtggcaacggattcttccattccctggaagctgccgccgagcccaccttgcagatcgggtataaaatgcatgttactcatttcagcttcatgatcgtttctctgatctcattagttcttgaaaccaattgtgtatccagtttaattttttcattattacgggaaaagcttgcacgtacacatatataccactacacacgcgcgtacacccactcacgcatacatccgtgagtaagcttttttaacacatgcttaagagatatgaatggtgtttttctagccttactagattactaaggaggtccactcaatcgtgcgtatctattttattctgtgctAAaaaaaggtatggaatgctctctacacatgaacttgggccgagtttagttccaaaatttttcttcaaactttcaacttttctatcacattaaaacttttctacacatataaactttcaacttttctgtcacatcgttccaatttcaaccaaacttctaattttggcgtgaactaaacacacccttaacacaatttgattctcttcgtaggtttactccagagcagatgaacaactcatgcgtgactgccttcatgccgacatggctaccctgaactcctgaaggccgatgcgacaaccaataaaaacggatgtgacgacacagatcaagtcgcaccattagattgatcttctcctacaagagtgagactagtaattccgtgtttgtgtgctagcgtgttgaaacttttctgatgtgatgcacgcacttttaattattattaagcgttcaaggactagtatgtggtataaaaggccgtacgtgacagcctatggttatatgctgcacaaaaactacgtatggtacagtgcagtgcctgtacaTttcataatttgcggtaaagtttattgactatatatccagtgtgtcaaatataataaaatgtcgaggtttaattacc
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| CDS seq | ATGGGGAGAGGGAGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACAGGCAGGTGACGTTCGCGAAGCGGAGGAATGGGCTGCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGcatgaccagaactttggaaagataccaaaaattcagttatggtgggccagatactgcaatacagaacaaggaaaatgagttagtgcaaagcagccgcaatgagtacctcaaactgaaggcacggacacagcatatgcttgatcagctcactgatctccagaggagggaacaaatgttgtgtgaagcaaataagtgcctcagaagaaaactggaggagagcaaccagttgcatggacaagtgtgggagcacggcgccaccctactcggctacgagcggcagtcgcctcatgccgtccagcaggtgccaccgcacggtggcaacggattcttccattccctggaagctgccgccgagcccaccttgcagatcgggtataaaatgcatgttactcatttcagcttcatgatcgtttctctgatctcattaaaggccgatgcgacaaccaataaaaacggatgtgacgacacagatcaagtcgcaccattagattga
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| Protein seq | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGYKMHVTHFSFMIVSLISLKADATTNKNGCDDTDQVAPLD |
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| Function | MADS-box transcription factor 8 [UniProtKB/Swiss-Prot:Q9SAR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0015910 | OsKeNa_09g0015910.01 | Chr09 | 20105808 | 20112183 | + | NAM | ||
| CDS seq | ATGGGGAGAGGGAGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACAGGCAGGTGACGTTCGCGAAGCGGAGGAATGGGCTGCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGcatgaccagaactttggaaagataccaaaaattcagttatggtgggccagatactgcaatacagaacaaggaaaatgagttagtgcaaagcagccgcaatgagtacctcaaactgaaggcacggacacagcatatgcttgatcagctcactgatctccagaggagggaacaaatgttgtgtgaagcaaataagtgcctcagaagaaaactggaggagagcaaccagttgcatggacaagtgtgggagcacggcgccaccctactcggctacgagcggcagtcgcctcatgccgtccagcaggtgccaccgcacggtggcaacggattcttccattccctggaagctgccgccgagcccaccttgcagatcgggtataaaatgcatgttactcatttcagcttcatgatcgtttctctgatctcattaaaggccgatgcgacaaccaataaaaacggatgtgacgacacagatcaagtcgcaccattagattga
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| Protein seq | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGYKMHVTHFSFMIVSLISLKADATTNKNGCDDTDQVAPLD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0015910 | OsKeNa_09g0015910.02 | Chr09 | 20105796 | 20112179 | + | IsoSeq | ||
| CDS seq | atggacaagtgtgggagcacggcgccaccctactcggctacgagcggcagtcgcctcatgccgtccagcaggtgccaccgcacggtggcaacggattcttccattccctggaagctgccgccgagcccaccttgcagatcgggtttactccagagc |
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| Protein seq | MDKCGSTAPPYSATSGSRLMPSSRCHRTVATDSSIPWKLPPSPPCRSGLLQS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 23.907606 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0507200 | RBH | 0.0 | 0.0 | 87.004669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32948 | RBH | 0.0 | 0.0 | 22.378912 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0507200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015900 | RBH | 0.0 | 0.0 | 45.707294 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023140 | RBH | 0.0 | 0.0 | 16.791792 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016130 | RBH | 0.0 | 0.0 | 89.489326 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016040 | RBH | 0.0 | 0.0 | 140.689743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0329000 | RBH | 0 | 0.041501 | 22.3759645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015900 | RBH | 0.0 | 0.0 | 15.526439 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0318400 | RBH | 0.0144025 | 0 | 33.891577 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015670 | RBH | 0.0 | 0.0 | 17.142155 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016180 | RBH | 0.0 | 0.0 | 36.066387 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015970 | RBH | 0.0 | 0.0 | 77.618706 |
