Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0023140 | OGI:08075460 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:27668314-27672818 | ||||||||
| Gene Symbol | MADS7, OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45 | ||||||||||
| DNA seq | gatgggcatgggcggcgagcgatggacgcgacgcgacccatcctggtttcccgaaacgcgctacgctgccgagcatctagggtttcccacccggtacgaccttgccgaaaatggcacccactcaccatctccatccttttaatccccttcctccacctcgcttgctttcttgcagtggtggtggtggtggtggtgagatctagcttggttggttggttgcagctggagatcgatcgggatggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagaggttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatctgtcctgtccagatctgttcatgcatcatcaaaagctagctgcatctgccttttgcccggaattccagctgcatgctatgccggcttgatttctgcatacgatcttttgacaagaaacgagctgtggcgtgttcaaccgcacgctacctagctagctagattgctcttgcttccgtgggttttcacgccgggatagatctgggcaatatcctgggtttagggttttgcttcctggtccgtgtggtagatcggtgcacatctttagtttgccagttggtttccttctccgatctgtccgtcttacgtgcgatttcttcatgtgtggtctcggaactcgcaaaggaactgaaaagtttgcttatttacgaccttttcttctggatctgcaaggttctttgtttcccttagctaaatccttaaaagaagtagtccaatatatacttccatgcataatattgcaaaataaatgatggtttgttgataaccaaagtaaagagacataaaaactaactagagacttttttttttcaaaaaaaaaaaagaagaatcttgtctactgtgttatatatcagtagtatatatacagagatcaacggcttcagtctactaatcaaacaatataatctcatagggggacttgcaagaaccatatgttccatttctgaatgtattttaagctagaatgcatgacaacgaaaaaagggcattgtggtagtaaatgtgccatgcccctattgtagatcttaatcatcgttaatctctccttcttgtgatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgaggtaattattaattgtgttcattaattacacccattattatgcagcaaactaattttggtttgaccacataagtgttttctcacatgtaacattacttttctactaccataatagcatgtgcatatgaaggagatggtttgcaattgcaatatgttatatacatatgtcctacacatgcattttcaaaacatcgaattaatggtcaactattttgtttctttcagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaaggcaagttatgatgcattttcactgataagcttctctcttgatgatgcttttaggtttgcatttagacgattttatgcaagagcggttttgtaccacaaaaatatgattttcgatgtcatagcgctgcaagaatgatgtgaataaactcatagtatttctttttatagtgctgtcgttataaacaaaaaaaatatcatgttaacagtaattaaatgttgattccagctaattgcttggatgttatcagcctagagaaccttaggtgggcatcctaattttaaggtatagtagcacaactactagctattataggcgggctatcaataggtagaataataaaaacaaagcacaaacagtgtaccatatactccctccgtctcataaaaaaaccaacctagtactggatgtgacatatcttagtactacaaatctaaacataggctgtgtttagttcggtccaaagtttgaaatttggttaaaattagagacgatgtgactgaaaagttgtgtatgtatgaaaggtttgatgtgatggaaagttggaagtttggaaaaaaaaactttggaactaaacacatcaatacctttgttcagattcattatactagaatgtgtcacatctgatcctagattcgtttttttgggacagagggagaaagtcacaagctcatagaataaatcaatcatacaactagtataaagcatctcaaatctattttgttttatcaaaatctagttgaggacacacatatatacaatccaggttcttatagcattctcaccattaattaattaaccaatagatcaagaaatcaactgtactactcaaaattagacaggcagctgtcgaccagctgataagatctatatataacatgatgtatatacatgtcattggtaaaaaaaaatcacatacatgcatgtcatagtagtactactcgcaggtcgtagttccaacatgcaactgcataatgaagaagtacatagtattgagtattagcttagctgttacacatgtaataatacatcattttgaaacacacgctgtaagttaaattttatttggaaacattagtagttaattaacttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacgtcagaactacaagggtaatgattgtttttgggtgctagatcacaaacaagtaccatgcatgcatgcatgtactccctctgtgaaaaaaaaaattccaatcctagttatgacagtgtgtacacgtgtatctaagtttctagctagaattgtgttttgtattggacgaagggtgtaggtgtgtagcactagtttttgaagtaacacaaaggagtacatacacaccatatatgttgcatgcagatgcaattgacttaaatgcagccctattgttgatcgtgtggatagctacctcacgcaattattaatttcctgcgtaaaatttataggaacccatgcatgaaagatctgaattgtaaatcttacttgtcaatgcttttaatcctcttgtagacaaaacatctggttgaccaactgacggagcttcagagaaaggtatatttttaagaattatcaataaaaagtgttgatcacatttttcttccttagcagtagtagatattgaccctgtttacttaatttacaggaacaaatggtttctgaagcaaatagatgccttaggagaaaagtaagttatacaactcttccatctttctccttaggagaaaagcaagttatacaactcttccatctaaagaaaggtttattcaactaatcattcatgaccaagaatcttaagataaacctcaactgaactatggtgtgtttcctatatatatgaattatggagtatatagtccatgatcaatataatgcagatatcatggaatggaagccctgattaatgtagtgaaagggatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagctggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtatgctcatatgatctcttcctatatatacttggaaccaattgccggtctatatatataatctgatccaggacaatatagctagctaggctagtttttgtatatgcacacttaatattgtatagatctttaaataatggctatatttttttgcttatatatgcctctgaaagtctgaatgtgatacctgttttgcaggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatgatgatgacggggacaatgaattacgaaataacaaggatatgtggcatatatgtggtgccgcatacatgcatgtatcatggctagctacttaattggagtgatggatttgaactagtttcgtatgtagcctgtttgtgtgtaacttgtgtgagatactaccttaaaaactatcggtgtctgttgaacatattctgcgatcaactttaagcgtattattatcattttcattccattc
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| CDS seq | atggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacacaaaacatctggttgaccaactgacggagcttcagagaaaggaacaaatggtttctgaagcaaatagatgccttaggagaaaactggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatga
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| Protein seq | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEHHEAMNSACMNTYMPPWLP |
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| Function | MADS-box transcription factor 7 [UniProtKB/Swiss-Prot:Q0J466] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0023140 | OsKeNa_08g0023140.01 | Chr08 | 27668314 | 27672814 | + | NAM | ||
| CDS seq | atggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacacaaaacatctggttgaccaactgacggagcttcagagaaaggaacaaatggtttctgaagcaaatagatgccttaggagaaaactggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatga
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| Protein seq | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEHHEAMNSACMNTYMPPWLP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0023140 | OsKeNa_08g0023140.02 | Chr08 | 27668486 | 27672818 | + | IsoSeq | ||
| CDS seq | atgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtaccctgcagagcatcatgagg |
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| Protein seq | MNVSLKCSSLFTAAMGSSIHLMLLVNPPFRLGTLQSIMR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 27671305 | 27671697 | + | OsKeNa_08g0023140.02 | OsKeNa_08g0023140.01,OsKeNa_08g0023140.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 16.791792 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0531700 | RBH | 0.0 | 0.0 | 76.248993 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g41950 | RBH | 0.0 | 0.0 | 15.709343 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0531700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023260 | RBH | 0.0 | 0.0 | 33.705654 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015910 | RBH | 0.0 | 0.0 | 23.907606 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023060 | RBH | 0.0 | 0.0 | 59.085915 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0023300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023050 | RBH | 0.0 | 0.0 | 136.466461 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0422600 | SBH | 0.330886 | 0.088628 | 66.128719 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022930 | RBH | 0.0 | 0.0 | 13.437390 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0443000 | SBH | 0.741241 | 0.0517905 | 57.6051295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0022630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0022460 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023270 | RBH | 0.0 | 0.0 | 20.420485 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0022610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G022790 | RBH | 0.0 | 0.0 | 29.684261 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022930 | RBH | 0.0 | 0.0 | 88.835014 |
