Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0003880 | OGI:09018580 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:6704792-6709817 | ||||||||
| Gene Symbol | RPS2, OsRPS2, PI3, Pii, Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, RMg22, RMg21 | ||||||||||
| DNA seq | ctattgtagattggtgaaataataccctgcttcatggttgtattccatcaatgctgacctgtcatgtgtgtagacgctaacatgagggaagcgcctgatggtgggccagtctgggccttttctcacgcatcttcgcattagagtgatgctgcatctcaatgtcagttggaggtcatttgctagctttcgatttttgtcagcaagaccttgcaaccattctggcagtttgtccaatgaactactacacaattccatatatcgaagtgaaggcaaatgttcaatgtgcttgagagcgtgaacgtcagtgatgaccagcttattcaaagcagggaggttcgagattatttctactccactactcttctcaataactagttgattatgcaaataacggaagtttgtcacacaagtgagactgtcgcatttagtgataccaattgtttggatggttgtgatcttttgcagagtcgtggggagagatcttaactttgggcaacccaatatctgaagctcaaccaaatgaggcattgatggttcttcctcttcttcatttccactcattgaccattcttcccaattgggcattccattgaatgtaaggtattcaagcttagggaaagcagttgaaactccatgcatgccaacaaactctgtgccaatgttaacaatggcaaatgcatcctcaatattgaggtatctcaattggggcagttttccgaatggtggaagttgtgtgcaaaaggagcaaccgatgagatgtatgtattctatgcaaggtagattggtttccaaggaggaagaaataagccatcctggcaagctttgtccacaaaagttgattatctgtagcttctccaatgaaggtggtgggaacaacccctcaaagatggcctcaattgtattgatctcttcgaaagacaacttatactgcggcatagtacatgacaagatcaggtgccttaggaagcatttacttttgagcattggttttgagatcattgctctctccagcctagttatggaaagccaccttagttgggccaaatactctagctcttccaaaccccaaccttcctgcaattcggtctgacatgttgtgtgcccgcctgcaacaaatccaccaatgtcattgagaagttttagtttccccaatccttttggaacatgtgtaacaggtgtaccattgagaccaagacatctcaggtcatcaagctgagtgatactagcaggaaggctatgcaaacataagcatctgattagatacaatatctgcaggttcttgagggaaccaatggacattggtaggctggctatgctagtataattgagattaagcatgcgcaagtgaagtaaattttctatactgcttggaaggttctcgataactttcccattgagcaccaataccctaaggcatggaaaactaaatattgtctccctttgaaagattgaagtgccctccaacagcatcagtgtcctcagggacaaattctttctctgtgatcgtgtgaggggatctgcctcctcctctacttcttcatccataagaacggataagcggcgaatcttcgacaaggaaaaggcatccaactttcttggatctccgcataagctttcacctcgtgatagatattgagcaagagaccggagaagatcatgcattctgcacttccgttggtcagcgtagagaacaattggttgcaagaggcttctacttactaattcggcataacagttttcagccagttcttctgctatgagctgctcctttggatgtaaaaatccttcagccacccacagtgcacgtagatcccaaatagcaagatcataatctgcagggaagagtgataaggataaaaaacattgtttcagatgtggtggcagatcctcgtaactcatgtatagggcaccccatgccccttttagctctcctggtagctccttcatgttccatattccacttctaagaacattgctccattgttgtggattatgacccttccttgacaagagactaccaatcagtttgatagcaaggggaagaccatcacatttgcgaacaatttcttcccctatttttaccaacctttcaatatcatcttctctgctcacccgtgctttcttacaaagcagctccagacttgatctggcatgtaacttctgaacctcatgtatatacattgctttaatacctctcgcaacatcttgatgcctagtggttactaggacgcatccacatctcggagtactatgcaagggagtgcagagcaatgcattccacacatctgcactccaaatatcatccagcacaagaaataagcacttattggctacagtattggccatgatcggtagaagttcagcttttgttttggcctgtccatagtctcctcgtgcttgccttattgtctcctgtattaattcaacctcagagaacttccttgaaacacatatccatattgtggtagggtagaaatttttaattttcacatggttataaaccctttgggcaagtgtagttttaccaatccctcccattccagttactgcaacaattttgaagttatcctcatgtgaaaagatcatgtcaactattttccttgtgctatcttcaatctctgtgccaacaatatcaagatcaatgagaggggaagtctgccttacattgacagtagtgtcctgttgttcacatggtttcaagtggcataaacttaacacaaggctgttattctctatatcagttaatctatcactgagatttctgatcttgcttcctatcttatgtcgcagccgaactgtactaaagaaagagagtagagaacaatgcatttttctttgctgaatagaagaagacggttgttcctcaagcaattccctacctttagttctacacaagtcaattatgtcatcagcttcatataacacatctttcaagctgttcaaccaaatctcgattgttctgtactggagtttcttcctctctgcatcctctagaactgctttgattagctccactttcgcctgtagcttcttgagatcgtctttcactccaagaatcataacagcatgctcctcaagcaaattgacaatcctgtcaacgcagctagtaagaaatgcttctgcctgtgttcccatttgtgatctgtgaatccaagctacaaataaattatatacattgttagacttgtgccaccttcaatgggagcacaggaatatgatcatcaaaatttatggtaactaccatgaaattcagttgtcaagaaatgatggtcatgcattatttatgcaaaatatgatgtaatcaccaaaatgtgatggcaaaaaattgacagtttgcagctaaactaataccttggtattatctaaaaaaaataatacctgggtattaaaatttatctatccacgagtacgaaggcctacaaagtagttttgtatttatatttacctgtgttgaaatgctagtatactacattatgtgtagtgtgaagtgtatgtgtgacttaacacaagttacttacactatttgcttgtttgtgatttttttaggcaaaatggcaggaactctgccaatcaccattaggaggacaatttaattgtgatttaattctatacaatagttacctaatatactacgccattaatactcaacgtcttgcagtccgtgttacagctggctacaaatctgtagcccgctttctttccactcttctctttttttctcgatatatggttatagctggcttatagcctgctattgtacttgctcttacaagaaaaggatatgaagctaattagttcatgaaactgatcagtggagtattagggtaatcactattcccaaacccaaaccaattggaatcctgttctgttttccactggacaatttatatccaggatcattgtgatacactgtgaacagtttgtccagcctctcatgatatgtatgatgctgttttatgatatctcgccttgggaaaagaccttacaataacagtcactaggttttcggtAaaaaaaaaaagtaaccataggttagaatcctgaaattcaaaaaatcgtttcttgatattccacatgtattttgaggaaattttgcagatataaatcacagtagattgaatttctatgatattgtacacttgtcaacctgagatttcatctgatgaatgaatatgcgcatgtgtaaggcgcctcaatgacaatgggcaactgaattattcttttgccaggcaagtatgttaagctgccctgcagtactacaacatcatctagaataattccccttcttggatataagatgatttttatagatgtcacaattaattaaagcccttcctagttcctggatatatcttctacctaatccaaaagaatctactattagatatgcaacagatcatgcaacatttacctgctaataagctttatgtacttaaacggtaaaaatgtattcttaaaaagattactagctggacattaaaaaaacacttaacgtcctagcgataatcagttccttttctacttccttataatctttcgacaatagaaaaggaactagttagtggagtataactggtcaaattatggtttactccggtgataagattcatacctgaaggatcacatgttcattaaaacaaagcatgcaccaggttcaaaacttggtgaactcacatagcttcagcagagtctctatgggtaatggagctataattgatgtatagtgtttcgttgcctggatatcattagaggctaagtaatgacatgcaacaaagttagatgccaatttggtttgttataccaaatagaatgcatcaatcattgaggcactcgttctcttcaacatgaggctgctgcagccaatggtttcgcatttgatataatggtgctactgcaaaagccaacagttttgagctgcaaatgtcaatctacttttggaattgacatgatctatggtgaccttaactataatctataacaccttggctgttcattcttgaactgtgacgttggcgcaggtgaccat
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| CDS seq | atggtcacctgcgccaacgtcacaataataccaagatcacaaatgggaacacaggcagaagcatttcttactagctgcgttgacaggattgtcaatttgcttgaggagcatgctgttatgattcttggagtgaaagacgatctcaagaagctacaggcgaaagtggagctaatcaaagcagttctagaggatgcagagaggaagaaactccagtacagaacaatcgagatttggttgaacagcttgaaagatgtgttatatgaagctgatgacataattgacttgtgtagaactaaagttcggctgcgacataagataggaagcaagatcagaaatctcagtgatagattaactgatatagagaataacagccttgtgttaagtttatgccacttgaaaccatgtgaacaacaggacactactgtcaatgtaaggcagacttcccctctcattgatcttgatattgttggcacagagattgaagatagcacaaggaaaatagttgacatgatcttttcacatgaggataacttcaaaattgttgcagtaactggaatgggagggattggtaaaactacacttgcccaaagggtttataaccatgtgaaaattaaaaatttctaccctaccacaatatggatatgtgtttcaaggaagttctctgaggttgaattaatacaggagacaataaggcaagcacgaggagactatggacaggccaaaacaaaagctgaacttctaccgatcatggccaatactgtagccaataagtgcttatttcttgtgctggatgatatttggagtgcagatgtgtggaatgcattgctctgcactcccttgcatagtactccgagatgtggatgcgtcctagtaaccactaggcatcaagatgttgcgagaggtattaaagcaatgtatatacatgaggttcagaagttacatgccagatcaagtctggagctgctttgtaagaaagcacgggtgagcagagaagatgatattgaaaggttggtaaaaataggggaagaaattgttcgcaaatgtgatggtcttccccttgctatcaaactgattggtagtctcttgtcaaggaagggtcataatccacaacaatggagcaatgttcttagaagtggaatatggaacatgaaggagctaccaggagagctaaaaggggcatggggtgccctatacatgagttacgaggatctgccaccacatctgaaacaatattatgatcttgctatttgggatctacgtgcactgtgggtggctgaaggatttttacatccaaaggagcagctcatagcagaagaactggctgaaaactatcccctcacacgatcacagagaaagaatttgtccctgaggacactgatgctgttggagggcacttcaatctttcaaagggagacaatatttagttttccatgccttagggtattggtgctcaatgggaaagttatcgagaaccttccaagcagtatagaaaatttacttcacttgcgcatgcttaatctcaattatactagcatagccagcctaccaatgtccattggttccctcaagaacctgcagatattccttcctgctagtatcactcagcttgatgacctgagatgtcttggtctcaatggtacacctgttacacatgttccaaaaggattggggaaactaaaacttctcaatgacattggtggatttgttgcaggcgggcacacaacatgtcagaccgaattgcaggaaggttggggtttggaagagctagagtatttggcccaactaaggtggctttccataactaggctggagagagcaatgatctcaaaaccaatgctcaaaagtaaatgcttcctaaggcacctgatcttgtcatgtactatgccgcagtataagttgtctttcgaagagatcaatacaattgaggccatctttgaggggttgttcccaccaccttcattggagaagctacagataatcaacttttgtggacaaagcttgccaggatggcttatttcttcctccttggaaaccaatctaccttgcatagaatacatacatctcatcggttgctccttttgcacacaacttccaccattcggaaaactgccccaattgagatacctcaatattgaggatgcatttgccattgttaacattggcacagagtttgttggcatgcatggagtttcaactgctttccctaagcttgaataccttacattcaatggaatgcccaattgggaagaatggtcaatgagtggaaatgaagaagaggaagaaccatcaatgcctcatttggttgagcttcagatattgggttgcccaaagttaagatctctccccacgactctgcaaaagatcacaaccatccaaacaattggtatcactaaatgcgacagtctcacttgtgtgacaaacttccgttatttgcataatcaactagttattgagaagagtagtggagtagaaataatctcgaacctccctgctttgaataagctggtcatcactgacgttcacgctctcaagcacattgaacatttgccttcacttcgatatatggaattgtgtagtagttcattggacaaactgccagaatggttgcaaggtcttgctgacaaaaatcgaaagctagcaaatgacctccaactgacattgagatgcagcatcactctaatgcgaagatgcgtgagaaaaggcccagactggcccaccatcaggcgcttccctcatgttagcgtctacacacatgacaggtcagcattgatggaatacaaccatgaagcagggtattatttcaccaatctacaatag
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| Protein seq | MVTCANVTIIPRSQMGTQAEAFLTSCVDRIVNLLEEHAVMILGVKDDLKKLQAKVELIKAVLEDAERKKLQYRTIEIWLNSLKDVLYEADDIIDLCRTKVRLRHKIGSKIRNLSDRLTDIENNSLVLSLCHLKPCEQQDTTVNVRQTSPLIDLDIVGTEIEDSTRKIVDMIFSHEDNFKIVAVTGMGGIGKTTLAQRVYNHVKIKNFYPTTIWICVSRKFSEVELIQETIRQARGDYGQAKTKAELLPIMANTVANKCLFLVLDDIWSADVWNALLCTPLHSTPRCGCVLVTTRHQDVARGIKAMYIHEVQKLHARSSLELLCKKARVSREDDIERLVKIGEEIVRKCDGLPLAIKLIGSLLSRKGHNPQQWSNVLRSGIWNMKELPGELKGAWGALYMSYEDLPPHLKQYYDLAIWDLRALWVAEGFLHPKEQLIAEELAENYPLTRSQRKNLSLRTLMLLEGTSIFQRETIFSFPCLRVLVLNGKVIENLPSSIENLLHLRMLNLNYTSIASLPMSIGSLKNLQIFLPASITQLDDLRCLGLNGTPVTHVPKGLGKLKLLNDIGGFVAGGHTTCQTELQEGWGLEELEYLAQLRWLSITRLERAMISKPMLKSKCFLRHLILSCTMPQYKLSFEEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLETNLPCIEYIHLIGCSFCTQLPPFGKLPQLRYLNIEDAFAIVNIGTEFVGMHGVSTAFPKLEYLTFNGMPNWEEWSMSGNEEEEEPSMPHLVELQILGCPKLRSLPTTLQKITTIQTIGITKCDSLTCVTNFRYLHNQLVIEKSSGVEIISNLPALNKLVITDVHALKHIEHLPSLRYMELCSSSLDKLPEWLQGLADKNRKLANDLQLTLRCSITLMRRCVRKGPDWPTIRRFPHVSVYTHDRSALMEYNHEAGYYFTNLQ |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0003880 | OsKeNa_09g0003880.01 | Chr09 | 6704792 | 6709817 | - | NAM | ||
| CDS seq | atggtcacctgcgccaacgtcacaataataccaagatcacaaatgggaacacaggcagaagcatttcttactagctgcgttgacaggattgtcaatttgcttgaggagcatgctgttatgattcttggagtgaaagacgatctcaagaagctacaggcgaaagtggagctaatcaaagcagttctagaggatgcagagaggaagaaactccagtacagaacaatcgagatttggttgaacagcttgaaagatgtgttatatgaagctgatgacataattgacttgtgtagaactaaagttcggctgcgacataagataggaagcaagatcagaaatctcagtgatagattaactgatatagagaataacagccttgtgttaagtttatgccacttgaaaccatgtgaacaacaggacactactgtcaatgtaaggcagacttcccctctcattgatcttgatattgttggcacagagattgaagatagcacaaggaaaatagttgacatgatcttttcacatgaggataacttcaaaattgttgcagtaactggaatgggagggattggtaaaactacacttgcccaaagggtttataaccatgtgaaaattaaaaatttctaccctaccacaatatggatatgtgtttcaaggaagttctctgaggttgaattaatacaggagacaataaggcaagcacgaggagactatggacaggccaaaacaaaagctgaacttctaccgatcatggccaatactgtagccaataagtgcttatttcttgtgctggatgatatttggagtgcagatgtgtggaatgcattgctctgcactcccttgcatagtactccgagatgtggatgcgtcctagtaaccactaggcatcaagatgttgcgagaggtattaaagcaatgtatatacatgaggttcagaagttacatgccagatcaagtctggagctgctttgtaagaaagcacgggtgagcagagaagatgatattgaaaggttggtaaaaataggggaagaaattgttcgcaaatgtgatggtcttccccttgctatcaaactgattggtagtctcttgtcaaggaagggtcataatccacaacaatggagcaatgttcttagaagtggaatatggaacatgaaggagctaccaggagagctaaaaggggcatggggtgccctatacatgagttacgaggatctgccaccacatctgaaacaatattatgatcttgctatttgggatctacgtgcactgtgggtggctgaaggatttttacatccaaaggagcagctcatagcagaagaactggctgaaaactatcccctcacacgatcacagagaaagaatttgtccctgaggacactgatgctgttggagggcacttcaatctttcaaagggagacaatatttagttttccatgccttagggtattggtgctcaatgggaaagttatcgagaaccttccaagcagtatagaaaatttacttcacttgcgcatgcttaatctcaattatactagcatagccagcctaccaatgtccattggttccctcaagaacctgcagatattccttcctgctagtatcactcagcttgatgacctgagatgtcttggtctcaatggtacacctgttacacatgttccaaaaggattggggaaactaaaacttctcaatgacattggtggatttgttgcaggcgggcacacaacatgtcagaccgaattgcaggaaggttggggtttggaagagctagagtatttggcccaactaaggtggctttccataactaggctggagagagcaatgatctcaaaaccaatgctcaaaagtaaatgcttcctaaggcacctgatcttgtcatgtactatgccgcagtataagttgtctttcgaagagatcaatacaattgaggccatctttgaggggttgttcccaccaccttcattggagaagctacagataatcaacttttgtggacaaagcttgccaggatggcttatttcttcctccttggaaaccaatctaccttgcatagaatacatacatctcatcggttgctccttttgcacacaacttccaccattcggaaaactgccccaattgagatacctcaatattgaggatgcatttgccattgttaacattggcacagagtttgttggcatgcatggagtttcaactgctttccctaagcttgaataccttacattcaatggaatgcccaattgggaagaatggtcaatgagtggaaatgaagaagaggaagaaccatcaatgcctcatttggttgagcttcagatattgggttgcccaaagttaagatctctccccacgactctgcaaaagatcacaaccatccaaacaattggtatcactaaatgcgacagtctcacttgtgtgacaaacttccgttatttgcataatcaactagttattgagaagagtagtggagtagaaataatctcgaacctccctgctttgaataagctggtcatcactgacgttcacgctctcaagcacattgaacatttgccttcacttcgatatatggaattgtgtagtagttcattggacaaactgccagaatggttgcaaggtcttgctgacaaaaatcgaaagctagcaaatgacctccaactgacattgagatgcagcatcactctaatgcgaagatgcgtgagaaaaggcccagactggcccaccatcaggcgcttccctcatgttagcgtctacacacatgacaggtcagcattgatggaatacaaccatgaagcagggtattatttcaccaatctacaatag
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| Protein seq | MVTCANVTIIPRSQMGTQAEAFLTSCVDRIVNLLEEHAVMILGVKDDLKKLQAKVELIKAVLEDAERKKLQYRTIEIWLNSLKDVLYEADDIIDLCRTKVRLRHKIGSKIRNLSDRLTDIENNSLVLSLCHLKPCEQQDTTVNVRQTSPLIDLDIVGTEIEDSTRKIVDMIFSHEDNFKIVAVTGMGGIGKTTLAQRVYNHVKIKNFYPTTIWICVSRKFSEVELIQETIRQARGDYGQAKTKAELLPIMANTVANKCLFLVLDDIWSADVWNALLCTPLHSTPRCGCVLVTTRHQDVARGIKAMYIHEVQKLHARSSLELLCKKARVSREDDIERLVKIGEEIVRKCDGLPLAIKLIGSLLSRKGHNPQQWSNVLRSGIWNMKELPGELKGAWGALYMSYEDLPPHLKQYYDLAIWDLRALWVAEGFLHPKEQLIAEELAENYPLTRSQRKNLSLRTLMLLEGTSIFQRETIFSFPCLRVLVLNGKVIENLPSSIENLLHLRMLNLNYTSIASLPMSIGSLKNLQIFLPASITQLDDLRCLGLNGTPVTHVPKGLGKLKLLNDIGGFVAGGHTTCQTELQEGWGLEELEYLAQLRWLSITRLERAMISKPMLKSKCFLRHLILSCTMPQYKLSFEEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLETNLPCIEYIHLIGCSFCTQLPPFGKLPQLRYLNIEDAFAIVNIGTEFVGMHGVSTAFPKLEYLTFNGMPNWEEWSMSGNEEEEEPSMPHLVELQILGCPKLRSLPTTLQKITTIQTIGITKCDSLTCVTNFRYLHNQLVIEKSSGVEIISNLPALNKLVITDVHALKHIEHLPSLRYMELCSSSLDKLPEWLQGLADKNRKLANDLQLTLRCSITLMRRCVRKGPDWPTIRRFPHVSVYTHDRSALMEYNHEAGYYFTNLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0313500 | SBH | 0.494890 | 0.813071 | 1.376464 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11020 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0313500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003920 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004010 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0104100 | RBH | 0 | 0.007589 | 0.004146 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0102300 | RBH | 0 | 0 | 0.014543 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003930 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003920 | RBH | 0.0 | 0.0 | 0.0 |
