Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0023570 | OGI:08076520 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:28068733-28070210 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagggttcagttggtggatccctgggttctgtgcggctaggttgttccaggtaaagctgcatcttcacaggatcacagctcatggacttgattggggttatctgtggaggctgcatccactgtttggtgtctgtagggatccacagctgagcttccttctcaccatctggagggagggatcggaagtatgcagcgatctcccagctgccatctatcaccaattcagaatgtaagcatctcttgagagatcttctagtagcatggttcccctttctagcaaaatatggagatagtatggaaaaataagggtgatgtagattgagtacctgatggaagggttctagtaaggggttcagcaacagccagtttgatcaagaaagctcgcagagcgaattccaggctggcctcctctatcttggagccataagattggttaactgcaagcttgaacacaaacttctcaactggcacatgcgctttgtcgtagaagatgactacaaccctctcaaccaatccctggattgttgtgagaaaattatggttattcactagttggaaaagaaaaagaatcagcacaaattatttctaaaatgctcttcacatgaacgccaagagactgttcgatactgtaactcaggtttgaaataagctcacaaaattgttgccatacttccctccgcacatgacagaaactagaccaaactccaagcatatgcataatgagttaaggtagaactatgagatccatacattagcaagtttccctattattctcataaattgcaatgagttgtgataaccaatcagccaatgcgatataaaaaggtataatcaacaccaccacagtgtgcacaaggaaaatctcaagtctgtcagacaggatacatagtatactgcataattgcgtttgcattaaccaaaatgaattcaatatttagggaatgcctaaatcttcccatgttgtacccgcatgaccacaacctagaaataagctagttcaggaaatgcaacaacgaggaacaattatttagaggaggaaccttctgaatgaaagggagtaggccagaagtagcagagtggatataaccggcaagttgggggtgcactgctttctggaccactacattcatataccttctcctctcaaatgcacctacagatagtcagatacattatgtttaatcgaactgtgcctttacagatagcaaatattgacaaacaagctgaaataagtacaaaataggagtaattcttacgaggaggatagaagcctttgaggaagacaacacaactgacagctacctctagaaaatccacaatcacttgtgctatttgacctattaagccaaccaaggttttagcagagaggacaaaaggcattccttaaaaaaatcaacctaacttcaggaaccactggtataactatttgtaagcatttgtgctttttaccttgtggagtttgatttttcctgtccat
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| CDS seq | atggacaggaaaaatcaaactccacaaggaatgccttttgtcctctctgctaaaaccttggttggcttaataggtcaaatagcacaagtgattgtggattttctagaggtagctgtcagttgtgttgtcttcctcaaaggcttctatcctcctcgtgcatttgagaggagaaggtatatgaatgtagtggtccagaaagcagtgcacccccaacttgccggttatatccactctgctacttctggcctactccctttcattcagaagggattggttgagagggttgtagtcatcttctacgacaaagcgcatgtgccagttgagaagtttgtgttcaagcttgcagttaaccaatcttatggctccaagatagaggaggccagcctggaattcgctctgcgagctttcttgatcaaactggctgttgctgaaccccttactagaacccttccatcagatggcagctgggagatcgctgcatacttccgatccctccctccagatggtgagaaggaagctcagctgtggatccctacagacaccaaacagtggatgcagcctccacagataaccccaatcaagtccatgagctgtgatcctgtgaagatgcagctttacctggaacaacctagccgcacagaacccagggatccaccaactgaaccctga
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| Protein seq | MDRKNQTPQGMPFVLSAKTLVGLIGQIAQVIVDFLEVAVSCVVFLKGFYPPRAFERRRYMNVVVQKAVHPQLAGYIHSATSGLLPFIQKGLVERVVVIFYDKAHVPVEKFVFKLAVNQSYGSKIEEASLEFALRAFLIKLAVAEPLTRTLPSDGSWEIAAYFRSLPPDGEKEAQLWIPTDTKQWMQPPQITPIKSMSCDPVKMQLYLEQPSRTEPRDPPTEP |
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| Function | DNA polymerase zeta processivity subunit [UniProtKB/Swiss-Prot:Q94FL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0023570 | OsKeNa_08g0023570.01 | Chr08 | 28068733 | 28070210 | - | NAM | ||
| CDS seq | atggacaggaaaaatcaaactccacaaggaatgccttttgtcctctctgctaaaaccttggttggcttaataggtcaaatagcacaagtgattgtggattttctagaggtagctgtcagttgtgttgtcttcctcaaaggcttctatcctcctcgtgcatttgagaggagaaggtatatgaatgtagtggtccagaaagcagtgcacccccaacttgccggttatatccactctgctacttctggcctactccctttcattcagaagggattggttgagagggttgtagtcatcttctacgacaaagcgcatgtgccagttgagaagtttgtgttcaagcttgcagttaaccaatcttatggctccaagatagaggaggccagcctggaattcgctctgcgagctttcttgatcaaactggctgttgctgaaccccttactagaacccttccatcagatggcagctgggagatcgctgcatacttccgatccctccctccagatggtgagaaggaagctcagctgtggatccctacagacaccaaacagtggatgcagcctccacagataaccccaatcaagtccatgagctgtgatcctgtgaagatgcagctttacctggaacaacctagccgcacagaacccagggatccaccaactgaaccctga
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| Protein seq | MDRKNQTPQGMPFVLSAKTLVGLIGQIAQVIVDFLEVAVSCVVFLKGFYPPRAFERRRYMNVVVQKAVHPQLAGYIHSATSGLLPFIQKGLVERVVVIFYDKAHVPVEKFVFKLAVNQSYGSKIEEASLEFALRAFLIKLAVAEPLTRTLPSDGSWEIAAYFRSLPPDGEKEAQLWIPTDTKQWMQPPQITPIKSMSCDPVKMQLYLEQPSRTEPRDPPTEP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.192026 | 0.0 | 0.476893 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023550 | RBH | 0.471081 | 5.804913 | 3.275485 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0023900 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023460 | RBH | 1.279143 | 3.398304 | 2.890507 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0427000 | RBH | 1.623302 | 3.4482345 | 3.431504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023350 | RBH | 0.108228 | 0.000000 | 0.580642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0447300 | RBH | 2.5965345 | 4.2032965 | 4.6861545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023060 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0022880 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023720 | RBH | 0.309066 | 0.071569 | 0.298531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023050 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023240 | RBH | 0.0 | 0.000000 | 0.301700 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023370 | RBH | 0.000000 | 0.0 | 0.895575 |
