Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_08g0021480		OGI:08072550 \| 16/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr08:26354584-26360311		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		JMJ717
DNA seq		atcccggttgtttctggtcatacagaagtactagaagattgtaacacacgctagtatgatatacacggaccgtaacaaggccgtacccacaaaatagtggatcataaaacatgggttcaattaagtttttcttgggtttctaacatctgatgatagaaacgcaaacgtcatggatgatcaaaacaataacattacgagccctgaggaggaggaattgacgttcgccaccagaagctaacagagaaactagtagagagagatctaacgtaatgccaccattttggtggaatgtaaagcaggtcaccttcctccaatatgccgtccatgaattcaacgtctcctgtcctcgggaactcatttacgttaatgttgtcaagatctacctgcccagacattgattcagagaattgagttccgtgatgatcaattttacttgcaactagtaagcttagtttcataaatatatgacagcaaaggctcaggatgagaggaacatggataacttgttggacaaaaagaagcaaatgatgaccaggcgaaccagaagaaaatctggtctcattgtttgtcatattgtgtttaaaacacaactgaactcaaattttttgttccagattattaagagactacgcacctgactaatattgcttagcatagtttctctgtgagggtaaaggtcattggagatggaagcagaatagagtctaaaatatttcctgcccaagacctgtgaagaacagcaaatattgagaaaactaaacgaagtcctcaccgcaccaaataaaattcagtaatggataacctcaattgttacagcagccaacagaagctacaaacttacatgtagccattttggatatggccacaaccttttatcggaatatgagctttggtgcagtgcaaacattccagtgatctcaaaacagagtgggtgatctacgcgttggatgaataccagtatctgagggtttccctttttggagaaaaacagacaagtatagtccaagaaaggaagatttactcgtgggcatttgaatacaaacaaaatagttcgacaaatacttctactataggaaggaataatactactagagaacatgttttggtggcaataacaactgtgcactccatttgtcttatgctacttctcaatattgaactcaagaactaatcaattgcaagaactaatcaattgaacttcttcaggatgttcatgggccaaggaaaacgatacatgttacaataatattatgggttgatgtgtgtctcaactaagatagatggttactgccactgttgacgattaacaaccctctataaacctgagagacattagttctgcacattccaaagctcctagtctccgcaaattacaaaattaaaagtgtatataaactaggtagagaataaatatagataatacaactaaaaatctaaaatgtcatgaaacccgaattatcatacaatgaaaatggagtagtatcacattacgaagtaacaaaagaaaagtagctgcattataaattaaattagctcttgaaaaaattcatggaaagcagttgtaagaaagaagaataactttgtttgcattgaagcagaagtaatctgaaattaaacaccaaaggatcgagaataacatattcatgagattgagatacctgagcaaaaaggttatgatacaggtcatgatgcaatggtgtaaccgtcccttcagggccaaaccaggcattgagcttttggagttccccaccaccagcgttacaatattcaggaaccattatgtcttcacggagctcttttatctgttaaatgttgagtaccatcaactattagatggcaactgctaattccttatgtgtataaactcaagcatatggagaattgatcacctggtcaaacagtggatgctgaacaatcagatgaccacatcatctcaagaaactgagaaaatgtgataagctcctgtttccactcactagacaaatatttttttccaacctgagacaccactatttatatcagtgcactgggaacatctataagaaaagggaaaatgatcagttcgaacaccattcaacaaagaaagaagtcccaatttatttgaagcagaactacactaaggacataaaaatgtttttaaaaaagatatgctaaaggacgtacggaacacttgaatagacatgcattttggtagatcacatgaacagatgcaagaagatagtatggaagataaccagtttttaaaggaggatttttcaggtcatgttttacatactacaatactagatggcacaaaaatggtaaaacagaaacttggcaaatttcaaaccctgcgaaaaaagcaacagaattaaaccgatgatatacaatagtaatctatattgtaaaacaaagaaaataagcttaggagattatgccaatttccaaatataaaacatgtgaatcgatctgtttagaagatccagctgttgaggatgcagctccacacatatatgtaagttcattcattatcggattgtcctatccatccaaagtatgccttgacatttttgcaaggacatggtatgatttggattttgaaagtttgcatcaactttgaagcacactggatggataggatttataaggcagaatatgctagtttcaacatgcaattcaattcctctatgcagcacatctcaaattaacatcatatataggaatataaggtatcataatgcaaggataaatatgaacagaaaagctcttacaataataaatacttgtgagacctgttgaattgaggtcaagagggagtacacaaaccacttactggaaagtcaccattttatcgatgaataagattaaaaacagtccttcagtatcaccttatttatttatgaacagcataactactaattcattttttccccaaaaaatgcaaattgttctttcataattgaggagtggaataacaacactttataacggtaaattgatgcataaaacataagtatacctcaacaggaacagtccgatctcctgcaatcctctctaggtatcttatgtccttccactttgtccgtgcaggccagtgatcgatgtagccactgagtataacaggggactcacataaaaagtaatcacgtataaatgcctccaaagaaatgcatgatcgcctctcgatttgcttacaagataaggacttcactggcagaactttgagcacctgaaataaatcaatattaactggctgacagcagcacaataacaaagtaagaaacggagcataatcactcaaattggagtatcaacgaatccagagaaatgggcaacaatgtactcagtgatgctgttggtaacttggtattccaaacaaaatgatcacatttggcttgacataggtcacccacaactaacaaaatcgatccactggagccaagttccaattaggaaatcacatggctgaacatcagtgactgatatgctctatatgtcaagcaacatgactaccagtaaaggaaaggcaccaaacatcgcattaatattcctaacttaaaaagatatactccctctatttcatagtataaggtatgatcaaactcggtacggtctacaaaactaatttttgacttataatttctcatataccataaagtttgtagcagtgaaagggcatgtagcctagtggttgcagtgacctgagtagcacccaaggccctgagttcaaatctccataggagcgaatttcagattgggttatttgagggctaagttctctatttgataggctaagttcctaagttaaaatggctgtatatatccggttggatatagaggctgagtaaaaaaatacccttctctaaaaaaataaaaaaaataaagtttgtagcaacaaaattataaccatatgaaagtatattaaaatatcaatccaatgatattattttcagcaaataaaattcaatttatattatactaatcgttagtcgaatgtttttaaagttgaatcttgaaatgcgtgcgcaccttacattacgaatggagggagtaattcataactttttttttcaaccattagttgagtgcacccagatgtctggaacctgtgcatcactcatgccacttaaaatggcaaatccttaaaaattcggtacctcctcaatttgctgggtgacaaaacattgcatgtgcgtgtccttaaactctgtatctcctctatctggtagctgtactcctatctcatggaaattaatacaactttcaaaataaatccaggtcttaggccctgtttagatcccctggcaaaaattttcaccctgtcacatcgaatgtttggacacatgtatggagtattaaatataaacgaaaaaaataactaattacacagattgcgtgtaaattgcgagatgaatcttttaaacctaattgctacatggtttaacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaatttgtctaagtttacaggcggaatctgtaatttgttttgttattagtccacgtttaatacttcaaatgtgtgtccgtaattccgtatatccgatgtgacatgccaaaactttttaccctggatctaaacacagccttaataatgggaaaaattgtgaaaattatgaaccggacaattgcacgaggccacgagcttatgagaactgcggtagtgggaatgtgggatgcaatgtgcaccgagatagtgccacattcgagggttctcacttctcaggtagtatggcggtggatgttacagaaaaatatcttgtgcgaaccaattcagtgagtaattcaccaggactactgctgtacatggtacgaaattgcgacacgttttggctctatctaattttatcactgcattttccaatgcacctaaactacaaaactcaggattcatcacagcaagcagaggacgaaaccaagatgcgataggtttgaggaaatactcacatcggcgaggtctcgtttcctggttaggccttccatccatttctcaacatcagctccgttctctccggcgccgtcgccaccaccgccaccgcagccgcggctacggtcggcgaccacccgcgcgatggcttcctccagctcggcgcggaggaggtcgccacccatgatgaggcccatgtcgagcgcccggagcgcggcgcgtcggccgtcgccgccgccgccggcaacgcggagcgcggccacgtggaggcacgcgagcgcgtaggcgtccctccacgcgcgcccgacctcgctccgcgggcacgcgtgcagctgctcccacgccatctcccgcgccgcctccgccgcgcggaggtccccgtcggccgccgccttctccgccgacgccacgaacgcgaacccgccttcctccgtgatctccctcagcagcgccgcccgcttctccccgccctccgccgccgccgccgcccgcggctcgccgccggtggccatcggagcgggtagaaaaagcgcaaaagaggaggagatattttcgggggtgatgaggtggtcggttgcgtaggcgaggctcgagctcgagtcgagggtggtgagatatttatggtgcgagatattttctcgcggaagatcattctggaatgttccggaaaagagtgagagtgtgctcctggatggaggagcttgggtggtggtcggtgtcggcgtggagccattttctccattcgaattggtgtgaacaatttgacaagaaagcat More
CDS seq		atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaatatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggacataagatacctagagaggattgcaggagatcggactgttcctgttgagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcagggaaaccctcagatactggtattcatccaacgcgtagatcacccactctgttttgagatcactggaatgtttgcactgcaccaaagctcatattccgataaaaggttgtggccatatccaaaatggctacatgtcttgggcaggaaatattttagactctattctgcttccatctccaatgacctttaccctcacagagaaactatgctaagcaatattagtcagatcttgacaacattaacgtaa More
Protein seq		MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQGNPQILVFIQRVDHPLCFEITGMFALHQSSYSDKRLWPYPKWLHVLGRKYFRLYSASISNDLYPHRETMLSNISQILTTLT
Function		Lysine-specific demethylase JMJ30 [UniProtKB/Swiss-Prot:Q8RWR1]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_08g0021480	OsKeNa_08g0021480.02	Chr08	26354584	26360311	-	NAM
CDS seq	atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaatatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggacataagatacctagagaggattgcaggagatcggactgttcctgttgagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcagggaaaccctcagatactggtattcatccaacgcgtagatcacccactctgttttgagatcactggaatgtttgcactgcaccaaagctcatattccgataaaaggttgtggccatatccaaaatggctacatgtcttgggcaggaaatattttagactctattctgcttccatctccaatgacctttaccctcacagagaaactatgctaagcaatattagtcagatcttgacaacattaacgtaa More
Protein seq	MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQGNPQILVFIQRVDHPLCFEITGMFALHQSSYSDKRLWPYPKWLHVLGRKYFRLYSASISNDLYPHRETMLSNISQILTTLT More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_08g0021480	OsKeNa_08g0021480.01	Chr08	26354584	26360311	-	NAM
CDS seq	atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaatatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggacataagatacctagagaggattgcaggagatcggactgttcctgttgagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcaggtagatcttgacaacattaacgtaaatgagttcccgaggacaggagacgttgaattcatggacggcatattggaggaaggtgacctgctttacattccaccaaaatggtggcattacgttagatctctctctactagtttctctgttagcttctggtggcgaacgtcaattcctcctcctcagggctcgtaa More
Protein seq	MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQVDLDNINVNEFPRTGDVEFMDGILEEGDLLYIPPKWWHYVRSLSTSFSVSFWWRTSIPPPQGS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.159647	0.000000	2.409049

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_08g0508500	RBH	8.110471	9.454987	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os08g39810	RBH	2.725888	2.565107	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os08g0508500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_08g0021590	RBH	0.135673	0.000000	0.378922
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_09g0014850	RBH	0.000000	0.852818	1.199921
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_08g0021360	RBH	1.291684	3.200754	6.329216
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_08g0021550	RBH	0.127948	0.058779	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_08g0021410	RBH	4.110737	1.082866	1.070793
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_08G0402500	RBH	4.980449	12.506947	0.4051785
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_08g0021290	RBH	0.726132	0.0	0.059120
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_08G0422500	RBH	8.8596075	10.939937	5.3243255
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_08g0020620	RBH	0.167189	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_08g0020920	RBH	0.639254	1.693412	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_08g0020750	RBH	3.253015	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_08g0021600	RBH	0.438924	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_08g0020960	RBH	0.223616	0.676377	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_08G021100	RBH	1.240707	1.585158	0.488496
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_08g0021290	RBH	1.680198	2.922653	0.221239

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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