Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0020750 | OGI:08072550 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:26397508-26403196 | ||||||||
| Gene Symbol | JMJ717 | ||||||||||
| DNA seq | acacggaccgtaacaaggccgtacccacaaaatagtggatcataaaacatgggttcaattaagtttttcttgggtttctaacatctgatgatagaaacgcaaacgtcatggatgatcaaaacaataacattacgagccctgaggaggaggaattgacgttcgccaccagaagctaacagagaaactagtagagagagatctaacgtaatgccaccattttggtggaatgtaaagcaggtcaccttcctccaatatgccgtccatgaattcaacgtctcctgtcctcgggaactcatttacgttaatgttgtcaagatctacctgcccagacattgattcagagaattgagttccgtgatgatcaattttacttgcaactagtaagcttagtttcataaatatatgacagcaaaggctcaggatgagaggaacatggataacttgttggacaaaaagaagcaaatgatgaccaggcgaaccagaagaaaatctggtctcattgtttgtcatattgtgtttaaaacacaactgaactcaaattttttgttccagattattaagagactacgcacctgactaatattgcttagcatagtttctctgtgagggtaaaggtcattggagatggaagcagaatagagtctaaaatatttcctgcccaagacctgtgaagaacagcaaatattgagaaaactaaacgaagtcctcaccgcaccaaataaaattcagtaatggataacctcaattgttacagcagccaacagaagctacaaacttacatgtagccattttggatatggccacaaccttttatcggaatatgagctttggtgcagtgcaaacattccagtgatctcaaaacagagtgggtgatctacgcgttggatgaataccagtatctgagggtttccctttttggagaaaaacagacaagtatagtccaagaaaggaagatttactcgtgggcatttgaatacaaacaaaatagttcgacaaatacttctactataggaaggaataatactactagagaacatgttttggtggcaataacaactgtgcactccatttgtcttatgctacttctcaatattgaactcaagaactaatcaattgcaagaactaatcaattgaacttcttcaggatgttcatgggccaaggaaaacgatacatgttacaataatattatgggttgatgtgtgtctcaactaagatagatggttactgccactgttgacgattaacaaccctctataaacctgagagacattagttctgcacattccaaagctcctagtctccgcaaattacaaaattaaaagtgtatataaactaggtagagaataaatatagataatacaactaaaaatctaaaatgtcatgaaacccgaattatcatacaatgaaaatggagtagtatcacattacgaagtaacaaaagaaaagtagctgcattataaattaaattagctcttgaaaaaattcatggaaagcagttgtaagaaagaagaataactttgtttgcattgaagcagaagtaatctgaaattaaacaccaaaggatcgagaataacatattcatgagattgagatacctgagcaaaaaggttatgatacaggtcatgatgcaatggtgtaaccgtcccttcagggccaaaccaggcattgagcttttggagttccccaccaccagcgttacaatattcaggaaccattatgtcttcacggagctcttttatctgttaaatgttgagtaccatcaactattagatggcaactgctaattccttatgtgtataaactcaagcatatggagaattgatcacctggtcaaacagtggatgctgcgctagatatgtcaagtttgcagaacaatcagatgaccacatcatctcaagaaactgagaaaatgtgataagctcctgtttccactcactagacaaatatttttttccaacctgagacaccactatttatatcagtgcactgggaacatctataagaaaagggaaaatgatcagttcgaacaccattcaacaaagaaagaagtcccaatttatttgaagcagaactacactaaggacataaaaatgtttttaaaaaagatatgctaaaggacgtacggaacacttgaatagacatgcattttggtagatcacatgaacagatgcaagaagatagtatggaagataaccagtttttaaaggaggatttttcaggtcatgttttacatactacaatactagatggcacaaaaatggtaaaacagaaacttggcaaatttcaaaccctgcgaaaaaagcaacagaattaaaccgatgatatacaatagtaatctatattgtaaaacaaagaaaataagcttaggagattatgccaatttccaaatataaaacatgtgaatcgatctgtttagaagatccagctgttgaggatgcagctccacacatatatgtaagttcattcattatcggattgtcctatccatccaaagtatgccttgacatttttgcaaggacaTggtatgatttggattttgaaagtttgcatcaactttgaagcacactggatggataggatttataaggcagaatatgctagtttcaacatgcaattcaattcctctatgcagcacatctcaaattaacatcatatataggaatataaggtatcataatgcaaggataaatatgaacagaaaagctcttacaataataaatacttgtgagacctgttgaattgaggtcaagagggagtacacaaaccacttactggaaagtcaccattttatcgatgaataagattaaaaacagtccttcagtatcaccttatttatttatgaacagcataactactaattcattttttcccCAaaaaatgcaaattgttctttcataattgaggagtggaataacaacactttataacggtaaattgatgcataaaacataagtatacctcaacaggaacagtccgatctcctgcaatcctctctaggtatcttaTGtccttccactttgtccgtgcaggccagtgatcgatgtagccactgagtataacaggggactcacataaaaagtaatcacgtataaatgcctccaaagaaatgcatgatcgcctctcgatttgcttacaagataaggacttcactggcagaactttgagcacctgaaataaatcaatattaactggctgacagcagcacaataacaaagtaagaaacggagcataatcactcaaattggagtatcaacgaatccagagaaatgggcaacaatgtactcagtgatgctgttggtaacttggtattccaaacaaaatgatcacatttggcttgacataggtcacccacaactaacaaaatcgatccactggagccaagttccaattaggaaatcacatggctgaacatcagtgactgatatgctctatatgtcaagcaacatgactaccagtaaaggaaaggcaccaaacatcgcattaatattcctaacttaaaaagatatactccctctatttcatagtataaggtatgatcaaactcggtacggtctacaaaactaatttttgacttataatttctcatataccataaagtttgtagcagtgaaagggcatgtagcctagtggttgcagtgacctgagtagcacccaaggccctgagttcaaatctccataggagcgaatttcagattgggttatttgagggctaagttctctatttgataggctaagttcctaagttaaaatggctgtatatatccggttggatatagaggctgagtaaaaaaatacccttctctaaaaaaataaaaaaaataaagtttgtagcaacaaaattataaccatatgaaagtatattaaaatatcaatccaatgatattattttcagcaaataaaattcaatttatattatactaatcgttagtcgaatgtttttaaagttgaatcttgaaatgcgtgcgcaccttacattacgaatggagggagtaattcataactttttttttcaaccattagttgagtgcacccagatgtctggaacctgtgcatcactcatgccacttaaaatggcaaatccttaaaaattcggtacctcctcaatttgctgggtgacaaaacattgcatgtgcgtgtccttaaactctgtatctcctctatctggtagctgtactcctatctcatggaaattaatacaactttcaaaataaatccaggtcttagCCCTGTTTAGATCCccctggcaaaaattttcaccctgtcacatcgaatgtttggacacatgtatggagtattaaatataaacgaaaaaaataactaattacacagattgcgtgtaaattgcgagatgaatcttttaaacctaattgctacatggtttaacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaatttgtctaagtttacaggcggaatctgtaatttgttttgttattagtccacgtttaatacttcaaatgtgtgtccgtaattccgtatatccgatgtgacatgccaaaactttttaccctggatctaaacacagccttaataatgggaaaaattgtgaaaattatgaaccggacaattgcacgaggccacgagcttatgagaactgcggtagtgggaatgtgggatgcaatgtgcaccgagatagtgccacattcgagggttctcacttctcaggtagtatggcggtggatgttacagaaaaatatcttgtgcgaaccaattcagtgagtaattcaccaggactactgctgtacatggtacgaaattgcgacacgttttggctctatctaattttatcactgcattttccaatgcacctaaactacaaaactcaggattcatcacagcaagcagaggacgaaaccaagatgcgataggtttgaggaaatactcacatcggcgaggtctcgtttcctggttaggccttccatccatttctcaacatcagctccgttctctccggcgccgtcgccaccaccgccaccgcagccgcggctacggtcggcgaccacccgcgcgatggcttcctccagctcggcgcggaggaggtcgccacccatgatgaggcccatgtcgagcgcccggagcgcggcgcgtcggccgtcgccgccgccgccggcaacgcggagcgcggccacgtggaggcacgcgagcgcgtaggcgtccctccacgcgcgcccgacctcgctccgcgggcacgcgtgcagctgctcccacgccatctcccgcgccgcctccgccgcgcggaggtccccgtcggccgccgccttctccgccgacgccacgaacgcgaacccgccttcctccgtgatctccctcagcagcgccgcccgcttctccccgccctccgccgccgccgccgcccgcggctcgccgccggtggccatcggagcgggtagaaaaagcgcaaaagaggaggagatattttcgggggtgatgaggtggtcggttgcgtaggcgaggctcgagctcgagtcgagggtggtgagatatttatggtgcgagataTtttctcgcggaagatcattctggaatgttccggaaaagagtgagagtgtgctcctggatggaggagcttgggtggtggtcggtgtcggcgtggagccattttctccattcgaattggtgtgaacaatttgacaagaaagcat
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| CDS seq | atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaAtatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggaCAtaagatacctagagaggattgcaggagatcggactgttcctgttgaggagcttatcacattttctcagtttcttgagatgatgtggtcatctgattgttctgcaaacttgacatatctagcgcagcatccactgtttgaccagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcaggtcttgggcaggaaatattttagactctattctgcttccatctccaatgacctttaccctcacagagaaactatgctaagcaatattagtcaggtagatcttgacaacattaacgtaaatgagttcccgaggacaggagacgttgaattcatggacggcatattggaggaaggtgacctgctttacattccaccaaaatggtggcattacgttagatctctctctactagtttctctgttagcttctggtggcgaacgtcaattcctcctcctcagggctcgtaa
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| Protein seq | MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEELITFSQFLEMMWSSDCSANLTYLAQHPLFDQIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQVLGRKYFRLYSASISNDLYPHRETMLSNISQVDLDNINVNEFPRTGDVEFMDGILEEGDLLYIPPKWWHYVRSLSTSFSVSFWWRTSIPPPQGS |
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| Function | Lysine-specific demethylase JMJ30 [UniProtKB/Swiss-Prot:Q8RWR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0020750 | OsGoSa_08g0020750.01 | Chr08 | 26397508 | 26403196 | - | NAM | ||
| CDS seq | atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaAtatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggaCAtaagatacctagagaggattgcaggagatcggactgttcctgttgaggagcttatcacattttctcagtttcttgagatgatgtggtcatctgattgttctgcaaacttgacatatctagcgcagcatccactgtttgaccagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcagggaaaccctcagatactggtattcatccaacgcgtagatcacccactctgttttgagatcactggaatgtttgcactgcaccaaagctcatattccgataaaaggttgtggccatatccaaaatggctacatgtcttgggcaggaaatattttagactctattctgcttccatctccaatgacctttaccctcacagagaaactatgctaagcaatattagtcagatcttgacaacattaacgtaa
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| Protein seq | MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEELITFSQFLEMMWSSDCSANLTYLAQHPLFDQIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQGNPQILVFIQRVDHPLCFEITGMFALHQSSYSDKRLWPYPKWLHVLGRKYFRLYSASISNDLYPHRETMLSNISQILTTLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0020750 | OsGoSa_08g0020750.02 | Chr08 | 26397544 | 26403196 | - | NAM | ||
| CDS seq | atgctttcttgtcaaattgttcacaccaattcgaatggagaaaatggctccacgccgacaccgaccaccacccaagctcctccatccaggagcacactctcactcttttccggaacattccagaatgatcttccgcgagaaaAtatctcgcaccataaatatctcaccaccctcgactcgagctcgagcctcgcctacgcaaccgaccacctcatcacccccgaaaatatctcctcctcttttgcgctttttctacccgctccgatggccaccggcggcgagccgcgggcggcggcggcggcggagggcggggagaagcgggcggcgctgctgagggagatcacggaggaaggcgggttcgcgttcgtggcgtcggcggagaaggcggcggccgacggggacctccgcgcggcggaggcggcgcgggagatggcgtgggagcagctgcacgcgtgcccgcggagcgaggtcgggcgcgcgtggagggacgcctacgcgctcgcgtgcctccacgtggccgcgctccgcgttgccggcggcggcggcgacggccgacgcgccgcgctccgggcgctcgacatgggcctcatcatgggtggcgacctcctccgcgccgagctggaggaagccatcgcgcgggtggtcgccgaccgtagccgcggctgcggtggcggtggtggcgacggcgccggagagaacggagctgatgttgagaaatggatggaaggcctaaccaggaaacgagacctcgccgatgtgctcaaagttctgccagtgaagtccttatcttgtaagcaaatcgagaggcgatcatgcatttctttggaggcatttatacgtgattactttttatgtgagtcccctgttatactcagtggctacatcgatcactggcctgcacggacaaagtggaaggaCAtaagatacctagagaggattgcaggagatcggactgttcctgttgaggagcttatcacattttctcagtttcttgagatgatgtggtcatctgattgttctgcaaacttgacatatctagcgcagcatccactgtttgaccagataaaagagctccgtgaagacataatggttcctgaatattgtaacgctggtggtggggaactccaaaagctcaatgcctggtttggccctgaagggacggttacaccattgcatcatgacctgtatcataacctttttgctcaggtcttgggcaggaaatattttagactctattctgcttccatctccaatgacctttaccctcacagagaaactatgctaagcaatattagtcaggtagatcttgacaacattaacgtaaatgagttcccgaggacaggagacgttgaattcatggacggcatattggaggaaggtgacctgctttacattccaccaaaatggtggcattacgttagatctctctctactagtttctctgttagcttctggtggcgaacgtcaattcctcctcctcagggctcgtaa
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| Protein seq | MLSCQIVHTNSNGENGSTPTPTTTQAPPSRSTLSLFSGTFQNDLPRENISHHKYLTTLDSSSSLAYATDHLITPENISSSFALFLPAPMATGGEPRAAAAAEGGEKRAALLREITEEGGFAFVASAEKAAADGDLRAAEAAREMAWEQLHACPRSEVGRAWRDAYALACLHVAALRVAGGGGDGRRAALRALDMGLIMGGDLLRAELEEAIARVVADRSRGCGGGGGDGAGENGADVEKWMEGLTRKRDLADVLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEELITFSQFLEMMWSSDCSANLTYLAQHPLFDQIKELREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLHHDLYHNLFAQVLGRKYFRLYSASISNDLYPHRETMLSNISQVDLDNINVNEFPRTGDVEFMDGILEEGDLLYIPPKWWHYVRSLSTSFSVSFWWRTSIPPPQGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 26397824 | 26398080 | - | OsGoSa_08g0020750.02 | OsGoSa_08g0020750.02,OsGoSa_08g0020750.01 | All |
| SE | Chr08 | 26398172 | 26399104 | - | OsGoSa_08g0020750.01 | OsGoSa_08g0020750.02,OsGoSa_08g0020750.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.253015 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0508500 | RBH | 8.110471 | 9.454987 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39810 | RBH | 2.725888 | 2.565107 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0508500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021590 | RBH | 0.135673 | 0.000000 | 0.378922 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021480 | RBH | 0.159647 | 0.000000 | 2.409049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021360 | RBH | 1.291684 | 3.200754 | 6.329216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021550 | RBH | 0.127948 | 0.058779 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021410 | RBH | 4.110737 | 1.082866 | 1.070793 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0402500 | RBH | 4.980449 | 12.506947 | 0.4051785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021290 | RBH | 0.726132 | 0.0 | 0.059120 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0422500 | RBH | 8.8596075 | 10.939937 | 5.3243255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020620 | RBH | 0.167189 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020920 | RBH | 0.639254 | 1.693412 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014710 | RBH | 0.000000 | 5.984045 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021600 | RBH | 0.438924 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020960 | RBH | 0.223616 | 0.676377 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021100 | RBH | 1.240707 | 1.585158 | 0.488496 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021290 | RBH | 1.680198 | 2.922653 | 0.221239 |
