Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0022170 | OGI:07068070 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:25127248-25131266 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgaaacacaccctccattctccgctccttccgttccattccatctccggtctgggagccgccgccgccgccttcttcccctctcactcccacctcactaaaaccctagcccaaaccccacctcctctcccgccatggctgccgcggcggccacctcccgcctcctccgccgccacccgcctcccctccccctcctcctccgctcctccatctcctcctcccgccctctcctccagcagcccgagctctcccccgccgccgcggccgatgcggcccccgccaccgatgccgcgccgctcccgccgaagccgagcacggggagccccttctacggcgagaactggcggaaccccgccgcggcggccaacccgtcctcatcctccctcctccccgcggtcgtcggcggcggcgcgcacgcccgcgcggcggcgtactcggcgtccccgggcgcggcggagctgaaggagacgttcgcggagtggatggcggagcagcggtgggaggagatgaagcagctgttcgagttctgggtgaggtcgctcgacccggcgtccgggaagcccaaccgccccgacgtcgacctcttcaaccactatctccgcgcgcagctcatgtccggggcgctcccgatcgagatgctggatctcgccgagcagatgcgcgagttcgagatcacgcccaacacggcctcccacaacctcatcctcaagagcatggtccaggcccaggaggctgatggcgccgagaagctcattgagcggtgagtcttttgtttttgttgtggctttgtggaatgggagatcgccattccctgattcattgttgtcataatgtgcatgtacaactcaaccatggaacctcgtaggtcgtttgcagcaaattttaaggcctgaaatatcagattttgttgcgtctttagtgacacgactagtttactagatatgcacgcctttcattcttctgatgcttagtgggtaacatagatacgatgtaacgttttgttttataaaggccatggatccattgcacttacggtttctctgatgtaacatatctcagatgctttatcaacattgcatacataatttataatatgtagttagtgcataaaactaaaagatgccttacagattgtgtataacattcaggaacttaagttttttttcttgcagctgtaagaacgttattattgtcaatgaattgtgcagaatattgtcaaatgatatacgatagcattttcatgtattatgctctaagtgcttgcattttgtttttgtctatatgttgcctatactgtggtcactactgctacagatttcacattgaaaatgattttatctgttgaaatcaggatgttgcaaacaggaactcaaccagatgacgaatcctacaatttggttgtaaatcttctgattaaactgaaccgggtggactctactttgaaatatttggatttgatgcttaaatcaggctacacaatatcttcctctgtttttgttgagtatgtccgggcatgtgtaagatctggtagattggatacattggcatcagtcatagagaagtgcaaggtacttattattcttttagactgacaagtctgtttactgtttatatactgttagttaggactcctaatttccaatgctggaaattctcaatcgttataagtttgtgggctaccaatgggccttcaacattcttcattttcgaatatacgtttcaatcttctcggtgtatgtactaacggtgcacttattttgtttcaggctacagatcagaacaaagtcttgtgtccaccatggtcctggtgtgttgaaatagcagaagctgcttttgaagctaacaacagcaagctgggtctttttgctttggaatatcttgcaagatggattgctcgttctgagcgtgttattcctcctcttcatctttcagttgatgaaggtttagtactctcagctctaagtgctgctggcagaacttgtagcactgatctcctgaatgctgcttggtcaatattacgtaagtccttgcaccagaaaagggcaccgacgccagaggcatatcttgccaagatttatgctcattcatccattggtcatcttcagcgggcttttggtaccctacgtgaatttgaaaatacctatgggaactttgaggatattgattcagagctcttctcaccgttcacttcattgcgaccactcgttgttgcttgctgtaaggatgggtacaccacactggactcggtatgttctctttacgctatgcataatgcatcaaggcgcaaaattcttatttggagatcatgtttaaaatcatccatgatgagctaatgatgaaaactctgtatgtgtagttccattggtgttatgaatttatacattatgccttctgtggcactgaattattctttcttgacgtttacctagttattcacttatttctcttttcaacataaaattggtgctttctttcttcactgttgatgttttatttagttatcatttccaccagagtatctgaggcacatttttttctctcaatgacaataattcctcatggctatggtagccttttgtattttggttcctctctgcaagcataccatgtatttcttcaacattcttatttctttgtggtccagtttcatattgacagttcaaagaattattgacacagtcctttttcagtgctattaggaattcgtcatagcattgtccccgccaatttgtcttgacattatgggaggaatgttttattgcctgttatgcatttctttcaccaaatatgatggaatatcctaacactgtaggctcctgcctgcaggtctatgtgcaattggagaatttaagttctgcagattcgccatacaaatctgttgctgctcttaactgtgttatattggggtgtgcaaacatttgggatcttgagcgagcatatgaaacttttgaggcaataaaagaaaagtttggacttacacctgacatacattcttacaatgcgcttttgcatgcatttggaaagcggaaaaaggtattattattacctaatggatttgatactttcacaacatttatcacctttttgccacttaccaacaatccattcaacctatgatgcccatgtgtattatacagactgaagaagcttgcaacgtctttcagcatctagtaagccttggtgttaagccaaatgcaacaacttatggccttcttgttgacactcatcttgtaaatcgggacgcaaaagctgctcttgctgtaattgctgagatggtatggtcaatttacttttgcacatttcctgtctatctatagtttctcaatgtgatgtctggttcaggttgatgcgggctttactccttcaaaggagacacttaagaaggtccaaagacgctgctcccgtgaatcagattttgatagtgacgagaaagtgcaatccctggctaagcagtttaactaccgaatgggtggtgaaaaccgcagggagatgctctttaacattgaatacagcgctgagttcgcaagtactcctagtccaaggtactgggctaaccttttctgaatccaacattttctttatttttcatcgcataccagcaatggctcTttttttttttttgctttatctaatgcatttgctgactgatttgcttgatggttttgttttgcaagttgattttgatgatgccggtgcgctctagtagacgtaatgtgtaccctcgctcactttgctggtacttgaagggcacggaagctgtagtctgtaaattatacttctttgtaccaacttccctaattatttcaagcatctcaagctatcatttttgttggcagaaccctcaacaggatttatgttaggatttcagaataagggtcctaatagattttttttttttgcctgctcaaagcaccatgttttacaatcaatggatgtttgctcaacttatctctcagttccagccttttttacggctctcgtgttatttattcctataccgcatgccatgtcaattatgt
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| CDS seq | atggctgccgcggcggccacctcccgcctcctccgccgccacccgcctcccctccccctcctcctccgctcctccatctcctcctcccgccctctcctccagcagcccgagctctcccccgccgccgcggccgatgcggcccccgccaccgatgccgcgccgctcccgccgaagccgagcacggggagccccttctacggcgagaactggcggaaccccgccgcggcggccaacccgtcctcatcctccctcctccccgcggtcgtcggcggcggcgcgcacgcccgcgcggcggcgtactcggcgtccccgggcgcggcggagctgaaggagacgttcgcggagtggatggcggagcagcggtgggaggagatgaagcagctgttcgagttctgggtgaggtcgctcgacccggcgtccgggaagcccaaccgccccgacgtcgacctcttcaaccactatctccgcgcgcagctcatgtccggggcgctcccgatcgagatgctggatctcgccgagcagatgcgcgagttcgagatcacgcccaacacggcctcccacaacctcatcctcaagagcatggtccaggcccaggaggctgatggcgccgagaagctcattgagcggatgttgcaaacaggaactcaaccagatgacgaatcctacaatttggttgtaaatcttctgattaaactgaaccgggtggactctactttgaaatatttggatttgatgcttaaatcaggctacacaatatcttcctctgtttttgttgagtatgtccgggcatgtgtaagatctggtagattggatacattggcatcagtcatagagaagtgcaaggctacagatcagaacaaagtcttgtgtccaccatggtcctggtgtgttgaaatagcagaagctgcttttgaagctaacaacagcaagctgggtctttttgctttggaatatcttgcaagatggattgctcgttctgagcgtgttattcctcctcttcatctttcagttgatgaaggtttagtactctcagctctaagtgctgctggcagaacttgtagcactgatctcctgaatgctgcttggtcaatattacgtaagtccttgcaccagaaaagggcaccgacgccagaggcatatcttgccaagatttatgctcattcatccattggtcatcttcagcgggcttttggtaccctacgtgaatttgaaaatacctatgggaactttgaggatattgattcagagctcttctcaccgttcacttcattgcgaccactcgttgttgcttgctgtaaggatgggtacaccacactggactcggtctatgtgcaattggagaatttaagttctgcagattcgccatacaaatctgttgctgctcttaactgtgttatattggggtgtgcaaacatttgggatcttgagcgagcatatgaaacttttgaggcaataaaagaaaagtttggacttacacctgacatacattcttacaatgcgcttttgcatgcatttggaaagcggaaaaagactgaagaagcttgcaacgtctttcagcatctagtaagccttggtgttaagccaaatgcaacaacttatggccttcttgttgacactcatcttgtaaatcgggacgcaaaagctgctcttgctgtaattgctgagatggttgatgcgggctttactccttcaaaggagacacttaagaaggtccaaagacgctgctcccgtgaatcagattttgatagtgacgagaaagtgcaatccctggctaagcagtttaactaccgaatgggtggtgaaaaccgcagggagatgctctttaacattgaatacagcgctgagttcgcaattgattttgatgatgccggtgcgctctag
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| Protein seq | MAAAAATSRLLRRHPPPLPLLLRSSISSSRPLLQQPELSPAAAADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAANPSSSSLLPAVVGGGAHARAAAYSASPGAAELKETFAEWMAEQRWEEMKQLFEFWVRSLDPASGKPNRPDVDLFNHYLRAQLMSGALPIEMLDLAEQMREFEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYNLVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVRSGRLDTLASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYLARWIARSERVIPPLHLSVDEGLVLSALSAAGRTCSTDLLNAAWSILRKSLHQKRAPTPEAYLAKIYAHSSIGHLQRAFGTLREFENTYGNFEDIDSELFSPFTSLRPLVVACCKDGYTTLDSVYVQLENLSSADSPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRKKTEEACNVFQHLVSLGVKPNATTYGLLVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLKKVQRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLFNIEYSAEFAIDFDDAGAL |
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| Function | Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [UniProtKB/Swiss-Prot:Q9FZD1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0022170 | OsKeNa_07g0022170.02 | Chr07 | 25127314 | 25131266 | + | NAM | ||
| CDS seq | atggctgccgcggcggccacctcccgcctcctccgccgccacccgcctcccctccccctcctcctccgctcctccatctcctcctcccgccctctcctccagcagcccgagctctcccccgccgccgcggccgatgcggcccccgccaccgatgccgcgccgctcccgccgaagccgagcacggggagccccttctacggcgagaactggcggaaccccgccgcggcggccaacccgtcctcatcctccctcctccccgcggtcgtcggcggcggcgcgcacgcccgcgcggcggcgtactcggcgtccccgggcgcggcggagctgaaggagacgttcgcggagtggatggcggagcagcggtgggaggagatgaagcagctgttcgagttctgggtgaggtcgctcgacccggcgtccgggaagcccaaccgccccgacgtcgacctcttcaaccactatctccgcgcgcagctcatgtccggggcgctcccgatcgagatgctggatctcgccgagcagatgcgcgagttcgagatcacgcccaacacggcctcccacaacctcatcctcaagagcatggtccaggcccaggaggctgatggcgccgagaagctcattgagcggatgttgcaaacaggaactcaaccagatgacgaatcctacaatttggttgtaaatcttctgattaaactgaaccgggtggactctactttgaaatatttggatttgatgcttaaatcaggctacacaatatcttcctctgtttttgttgagtatgtccgggcatgtgtaagatctggtagattggatacattggcatcagtcatagagaagtgcaaggctacagatcagaacaaagtcttgtgtccaccatggtcctggtgtgttgaaatagcagaagctgcttttgaagctaacaacagcaagctgggtctttttgctttggaatatcttgcaagatggattgctcgttctgagcgtgttattcctcctcttcatctttcagttgatgaaggtttagtactctcagctctaagtgctgctggcagaacttgtagcactgatctcctgaatgctgcttggtcaatattacgtaagtccttgcaccagaaaagggcaccgacgccagaggcatatcttgccaagatttatgctcattcatccattggtcatcttcagcgggcttttggtaccctacgtgaatttgaaaatacctatgggaactttgaggatattgattcagagctcttctcaccgttcacttcattgcgaccactcgttgttgcttgctgtaaggatgggtacaccacactggactcggtctatgtgcaattggagaatttaagttctgcagattcgccatacaaatctgttgctgctcttaactgtgttatattggggtgtgcaaacatttgggatcttgagcgagcatatgaaacttttgaggcaataaaagaaaagtttggacttacacctgacatacattcttacaatgcgcttttgcatgcatttggaaagcggaaaaagactgaagaagcttgcaacgtctttcagcatctagtaagccttggtgttaagccaaatgcaacaacttatggccttcttgttgacactcatcttgtaaatcgggacgcaaaagctgctcttgctgtaattgctgagatggttgatgcgggctttactccttcaaaggagacacttaagaaggtccaaagacgctgctcccgtgaatcagattttgatagtgacgagaaagtgcaatccctggctaagcagtttaactaccgaatgggtggtgaaaaccgcagggagatgctctttaacattgaatacagcgctgagttcgcaattgattttgatgatgccggtgcgctctag
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| Protein seq | MAAAAATSRLLRRHPPPLPLLLRSSISSSRPLLQQPELSPAAAADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAANPSSSSLLPAVVGGGAHARAAAYSASPGAAELKETFAEWMAEQRWEEMKQLFEFWVRSLDPASGKPNRPDVDLFNHYLRAQLMSGALPIEMLDLAEQMREFEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYNLVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVRSGRLDTLASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYLARWIARSERVIPPLHLSVDEGLVLSALSAAGRTCSTDLLNAAWSILRKSLHQKRAPTPEAYLAKIYAHSSIGHLQRAFGTLREFENTYGNFEDIDSELFSPFTSLRPLVVACCKDGYTTLDSVYVQLENLSSADSPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRKKTEEACNVFQHLVSLGVKPNATTYGLLVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLKKVQRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLFNIEYSAEFAIDFDDAGAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0022170 | OsKeNa_07g0022170.01 | Chr07 | 25127248 | 25131266 | + | NAM | ||
| CDS seq | atggctgccgcggcggccacctcccgcctcctccgccgccacccgcctcccctccccctcctcctccgctcctccatctcctcctcccgccctctcctccagcagcccgagctctcccccgccgccgcggccgatgcggcccccgccaccgatgccgcgccgctcccgccgaagccgagcacggggagccccttctacggcgagaactggcggaaccccgccgcggcggccaacccgtcctcatcctccctcctccccgcggtcgtcggcggcggcgcgcacgcccgcgcggcggcgtactcggcgtccccgggcgcggcggagctgaaggagacgttcgcggagtggatggcggagcagcggtgggaggagatgaagcagctgttcgagttctgggtgaggtcgctcgacccggcgtccgggaagcccaaccgccccgacgtcgacctcttcaaccactatctccgcgcgcagctcatgtccggggcgctcccgatcgagatgctggatctcgccgagcagatgcgcgagttcgagatcacgcccaacacggcctcccacaacctcatcctcaagagcatggtccaggcccaggaggctgatggcgccgagaagctcattgagcggatgttgcaaacaggaactcaaccagatgacgaatcctacaatttggttgtaaatcttctgattaaactgaaccgggtggactctactttgaaatatttggatttgatgcttaaatcaggctacacaatatcttcctctgtttttgttgagtatgtccgggcatgtgtaagatctggtagattggatacattggcatcagtcatagagaagtgcaaggctacagatcagaacaaagtcttgtgtccaccatggtcctggtgtgttgaaatagcagaagctgcttttgaagctaacaacagcaagctgggtctttttgctttggaatatcttgcaagatggattgctcgttctgagcgtgttattcctcctcttcatctttcagttgatgaaggtttagtactctcagctctaagtgctgctggcagaacttgtagcactgatctcctgaatgctgcttggtcaatattacgtaagtccttgcaccagaaaagggcaccgacgccagaggcatatcttgccaagatttatgctcattcatccattggtcatcttcagcgggcttttggtaccctacgtgaatttgaaaatacctatgggaactttgaggatattgattcagagctcttctcaccgttcacttcattgcgaccactcgttgttgcttgctgtaaggatgggtacaccacactggactcggtctatgtgcaattggagaatttaagttctgcagattcgccatacaaatctgttgctgctcttaactgtgttatattggggtgtgcaaacatttgggatcttgagcgagcatatgaaacttttgaggcaataaaagaaaagtttggacttacacctgacatacattcttacaatgcgcttttgcatgcatttggaaagcggaaaaagactgaagaagcttgcaacgtctttcagcatctagtaagccttggtgttaagccaaatgcaacaacttatggccttcttgttgacactcatcttgtaaatcgggacgcaaaagctgctcttgctgtaattgctgagatggttgatgcgggctttactccttcaaaggagacacttaagaaggtccaaagacgctgctcccgtgaatcagattttgatagtgacgagaaagtgcaatccctggctaagcagtttaactaccgaatgggtggtgaaaaccgcagggagatgctctttaacattgaatacagcgctgagttcgcaagtactcctagtccaagttga
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| Protein seq | MAAAAATSRLLRRHPPPLPLLLRSSISSSRPLLQQPELSPAAAADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAANPSSSSLLPAVVGGGAHARAAAYSASPGAAELKETFAEWMAEQRWEEMKQLFEFWVRSLDPASGKPNRPDVDLFNHYLRAQLMSGALPIEMLDLAEQMREFEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYNLVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVRSGRLDTLASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYLARWIARSERVIPPLHLSVDEGLVLSALSAAGRTCSTDLLNAAWSILRKSLHQKRAPTPEAYLAKIYAHSSIGHLQRAFGTLREFENTYGNFEDIDSELFSPFTSLRPLVVACCKDGYTTLDSVYVQLENLSSADSPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRKKTEEACNVFQHLVSLGVKPNATTYGLLVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLKKVQRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLFNIEYSAEFASTPSPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 25130773 | 25130922 | + | OsKeNa_07g0022170.01 | OsKeNa_07g0022170.02,OsKeNa_07g0022170.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.318085 | 3.351571 | 3.613101 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0599000 | RBH | 2.780904 | 2.680984 | 6.873993 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40800 | RBH | 1.867487 | 1.790620 | 1.757169 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0599000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022150 | RBH | 1.382566 | 8.884788 | 7.032808 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022040 | RBH | 2.404977 | 10.476514 | 9.660654 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021950 | RBH | 0.108192 | 0.785681 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022030 | RBH | 7.461291 | 22.717655 | 22.752920 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0400500 | RBH | 5.379746 | 12.615237 | 8.5320135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022480 | RBH | 0.252570 | 1.422202 | 1.834289 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0413800 | RBH | 4.035533 | 7.681387 | 11.5975075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021750 | RBH | 0.600714 | 0.166413 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021920 | RBH | 0.199448 | 10.798990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021830 | SBH | 5.032442 | 8.479010 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022050 | RBH | 0.824998 | 1.117803 | 0.944222 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021810 | RBH | 0.144339 | 12.342733 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021690 | RBH | 0.354860 | 9.488676 | 3.531427 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021770 | RBH | 1.720809 | 6.929776 | 9.545079 |
