Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0008730 | OGI:07023130 | 4/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:8018893-8023254 | ||||||||
| Gene Symbol | OsSSIIaChr7 | ||||||||||
| DNA seq | ctagaaaaatccgatggcgaagaccccgcaggagctcctagcccaacggccgccgacgaggaggaggagagcgatggcagccgacaaggaggaggagagcggcgcgacgggagatagccacgcagcgtgacagccttgccactgccgtgcccctgtcgacgctactcgcggccaccggcaaggagaggagagtagcggcgctggagctcctagatacgccgcgtctgggatgacgaattctggctgcggcttgtctacggatggaaggatcacgagggagtccggcgctgggagcttcggtatggtcacaagcggcgtggaggcggcggcggtggcaggtttgtctatgctggtaacgaccgatccgttccgtgagacaggtgtgtcgtcgtcgccgcagctgagaagcgctctgttcttgctggaggcggcgtcctgtgtcggcgccggcgccggtgcggtcgccctgcgcactctcgccgcgtcaccaccggagccgtaacggccgacgggcaggacggtgcccctccgcttcaagacctgcaaacacagcgcacgcacgcgtaagcacacacatcggtttcaaacgaactcagcaaagcaaatcaaagcggaaaaacacttgagcatgacgatctcgatgctccaacctaccttgccgacgccgtcaccacgacgcgagcggggaggctgccacgcgcccgaagaaccttgtcgtcgtcacccactcgctccacggccgcatcgttctccccatcatctgcgcagcgtaccacggccgcatcccgacgccgacgtcggaatgactcaaccaactcagtttggtataaccgacttaagggcattttggtcagaccgggtgcaaaattaggtggaaatggtaataattggcccaaatggcaaaacaaatatttggcatctcttgtgggtggcattttaaccactccattccgtgaaatggcattgtggcgaaacccactcttggcagtggcagaatgtccgatttctcgtctgagaacgaagcctggaaggagatatcctgggccggaggccactactgacaagccgagcccatttaagcccacataatgaaaatcccacccatatatcttgtgcgtttgggcccagcccataaaagcccatataaacgtagcacgaagccacgaacacgaagcaatccatccccactccccgatccccatcccctccgggctccggcggcgccgtctccgatcgccctcgactgagccggcggagaggctcgaggggagggaccccaccgggggaatccagctcggttcgacctgtcggcggcgggagcggccgcctgtcacgaaccaacacaatcacaccaaatctctcacacacagtgccaccaatatattgcaaatccactcaagaatacaagtgcccagggatacaatcaagagagtagaatcagggattggggagagcaacatagagaaggcagaagcatgagactaggattagagaaatagaaattaggggaggcagagttggaggaggaagagagccatggcaaggccaggttatatttctgttcatcgatccccttccagcgtgtgtggctgctgcttttatagtagtcaacttcctagctgagtgggccaaggtttgcttcagcccaagagctcactcgataggcccatatcgtgacattctttccccttgagtttcggcttgccctcaagccgatgcaacagagtcatagagccgccgggatcccagatcattggaactcttctggtgcaactgaagaacaatatcatgtgtctaaatatgatgctcaccattctgacagaactccaatgcaaaccaagtgatatttcaactggaaccatatagagtatatgcttttgatcctcccatctacacaaaaaccagcccagtacctcattgcagctcaggaacagcagttcaaaaccaaccagcataaaaccattcatgttttgcaccttacagtcaggtagaactaaagttttgatgagtccaagatgaattgtactccagaatctctcaacagatagcaaggttccatgcaattcagtggtgatgatgtggctgaagaatatttgatttgattcataaagtgctctagcaagatatatactcatccaaaactccacggagagatccattgcatcaagtattgtgctagattgttcacaataaactgacactacccaagttgcactgaactgataaataaataattgcatcacaatgacccaattagattgtttctttagcaaggcttgaaagtgtgttccattggcagctgaaacatccgcaatatctgatctcctttgaaaatgcttgcaccaaacagaacttgctagaaagttgaattgtaacatactcggaacttgttgaataaatgagttttcattcccatatagaacctgcctggttttgcataaacccaggtacaagatgcagcttggatttatcttcgcccaagattgcacaagcaaatcaatgtcacttatgtctcctgttggatgatcaagaaggtagttggaaccgaaattgacaactcccagttgcagctgctctctctgtaaacaacactcatttgtcttcccactttgattccactgaagaataaactcagatttaactagtaactgttgcagcctttcccatagttctccccaagaattgacaaatgacagtagcaatagttttggttgcagcattacttccaacccattagtcaaaccgccacaataatgcacatgaggtgaaaataatctcaagatccataaatcaggtggtggccatgtcttccaggaagtgatctctgtcaatgtcaaaaacatcaattccttacttttagtttgaagagaaggtggccatgattgaaagagtttgaccagcacacttctgctgccttgtactattcgtggatcaggacagggttcaagttgatgctcagcactgtcacctttgcaaatggctccaggaagagatggcccatactgtgagatcttcaccaccacgcttccactgccttgagtaaaccatggatcaggccatagtaaagattgctgctcaacaattgaacctttgcacttggcttgaaaaggaggtggccatggttggagaggctctgataccaccacacttccgctgcctggatgtgaccatggattaaagcttgcatttttcttgtggtccatccattgatcactgaaggaaaacacatgatacaatttggtctccactgcagtgttctccacacaatcctcttccctagccaagtcgacgttgtcacccatatcagcatcaatttcttgactgacctctagtgcaatggaaactgaatcagtaacggtgcagggcactacggccactccggtggaatcatcgcccacaattggttccactttactgccgcggcatgtctcaagcatttgattgatcatctcctttatctctacacacaaatcatggaaggtcttctctgatttgtcctctaccttgcccatgtcagcctcatcctccttggtcgcggtgaaggaaactgatggcgccgctgctgctgatgtggctgagggcatggatggattcgtggtgaccgggaacacatgttctggtgctgctggactgctctcagccacttgcctggtggtgacgctacttgatcccgacatcgaacacttggtgggcgtcatgtcgacgtcacctccgagcaagggatgagcgtactgaatgtccagctggcagcatccatcatagatattgcgcccttgagtggcagaacgagccctctccgcgtcttggcttgacatgaacgacacgagagcctccacatgccaagtgctcgtcgcaaggatctgcactgttgctgctccgtaggagtcgtagacctgatgtagcacctcggtagtcactggatagaagatgtggctcacggtgatgcaaaggacggcacctgagtcgcctcctagacagtccggcatttcaccgaacaggtggtgggcgtctccttcagaaacaccaccaccaaattgcttgctgctcctcccaccaccggcactctcccacaccatctcaacactggaaacaccacggatcgacagctctgataccatattgtcacgaaccaacacaatcacaccaaatctctcacacacagtgccaccaatatattgcaaatccactcaagaatacaagtgcccagggatacaatcaagagagtagaatcagggattggggagagcaacatagagaaggcagaagcatgagactaggattagagaaatagaaattaggggaggcagagttggaggaggaagagagccatggcaaggccaggttatatttctgttcatcgat
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| CDS seq | atgccggactgtctaggaggcgactcaggtgccgtcctttgcatcaccgtgagccacatcttctatccagtgactaccgaggtgctacatcaggtctacgactcctacggagcagcaacagtgcagatccttgcgacgagcacttggcatgtggaggctctcgtgtcgttcatgtcaagccaagacgcggagagggctcgttctgccactcaagggcgcaatatctatgatggatgctgccagctggacattcagtacgctcatcccttgctcggaggtgacgtcgacatgacgcccaccaagtgttcgatgtcgggatcaagtagcgtcaccaccaggcaagtggctgagagcagtccagcagcaccagaacatgtgttcccggtcaccacgaatccatccatgccctcagccacatcagcagcagcggcgccatcagtttccttcaccgcgaccaaggaggatgaggctgacatgggcaaggtagaggacaaatcagagaagaccttccatgatttgtgtgtagagataaaggagatgatcaatcaaatgcttgagacatgccgcggcagtaaagtggaaccaattgtgggcgatgattccaccggagtggccgtagtgccctgcaccgttactgattcagtttccattgcactagaggtcagtcaagaaattgatgctgatatgggtgacaacgtcgacttggctagggaagaggattgtgtggagaacactgcagtggagaccaaattgtatcatgtgttttccttcagtgatcaatggatggaccacaagaaaaatgcaagctttaatccatggtcacatccaggcagcggaagtgtggtggtatcagagcctctccaaccatggccacctccttttcaagccaagtgcaaaggttcaattgttgagcagcaatctttactatggcctgatccatggtttactcaaggcagtggaagcgtggtggtgaagatctcacagtatgggccatctcttcctggagccatttgcaaagttctacctgactgtaaggtgcaaaacatgaatggttttatgctggttggttttgaactgctgttcctgagctgcaatgaggtcttgaagcggaggggcaccgtcctgcccgtcggccgttacggctccggtggtgacgcggcgagagtgcgcagggcgaccgcaccggcgccggcgccgacacaggacgccgcctccagcaagaacagagcgcttctcagctgcggcgacgacgacacacctgtctcacggaacggatcggtcgttaccagcatagacaaacctgccaccgccgccgcctccacgccgcttgtgaccataccgaagctcccagcgccggactccctcgtgatccttccatccgtagacaagccgcagccagaattcgtcatcccagacgcggcgtatctaggagctccagcgccgctactctcctctccttgccggtggccgcgagtagcgtcgacaggggcacggcagtggcaaggctgtcacgctgcgtggctatctcccgtcgcgccgctctcctcctccttgtcggctgccatcgctctcctcctcctcgtcggcggccgttgggctaggagctcctgcggggtcttcgccatcggatttttctag
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| Protein seq | MPDCLGGDSGAVLCITVSHIFYPVTTEVLHQVYDSYGAATVQILATSTWHVEALVSFMSSQDAERARSATQGRNIYDGCCQLDIQYAHPLLGGDVDMTPTKCSMSGSSSVTTRQVAESSPAAPEHVFPVTTNPSMPSATSAAAAPSVSFTATKEDEADMGKVEDKSEKTFHDLCVEIKEMINQMLETCRGSKVEPIVGDDSTGVAVVPCTVTDSVSIALEVSQEIDADMGDNVDLAREEDCVENTAVETKLYHVFSFSDQWMDHKKNASFNPWSHPGSGSVVVSEPLQPWPPPFQAKCKGSIVEQQSLLWPDPWFTQGSGSVVVKISQYGPSLPGAICKVLPDCKVQNMNGFMLVGFELLFLSCNEVLKRRGTVLPVGRYGSGGDAARVRRATAPAPAPTQDAASSKNRALLSCGDDDTPVSRNGSVVTSIDKPATAAASTPLVTIPKLPAPDSLVILPSVDKPQPEFVIPDAAYLGAPAPLLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSSSLSAAIALLLLVGGRWARSSCGVFAIGFF |
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| Function | Soluble starch synthase 2-3, chloroplastic/amyloplastic [UniProtKB/Swiss-Prot:P0C586] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0008730 | OsKeNa_07g0008730.01 | Chr07 | 8018893 | 8022878 | - | NAM | ||
| CDS seq | atgccggactgtctaggaggcgactcaggtgccgtcctttgcatcaccgtgagccacatcttctatccagtgactaccgaggtgctacatcaggtctacgactcctacggagcagcaacagtgcagatccttgcgacgagcacttggcatgtggaggctctcgtgtcgttcatgtcaagccaagacgcggagagggctcgttctgccactcaagggcgcaatatctatgatggatgctgccagctggacattcagtacgctcatcccttgctcggaggtgacgtcgacatgacgcccaccaagtgttcgatgtcgggatcaagtagcgtcaccaccaggcaagtggctgagagcagtccagcagcaccagaacatgtgttcccggtcaccacgaatccatccatgccctcagccacatcagcagcagcggcgccatcagtttccttcaccgcgaccaaggaggatgaggctgacatgggcaaggtagaggacaaatcagagaagaccttccatgatttgtgtgtagagataaaggagatgatcaatcaaatgcttgagacatgccgcggcagtaaagtggaaccaattgtgggcgatgattccaccggagtggccgtagtgccctgcaccgttactgattcagtttccattgcactagaggtcagtcaagaaattgatgctgatatgggtgacaacgtcgacttggctagggaagaggattgtgtggagaacactgcagtggagaccaaattgtatcatgtgttttccttcagtgatcaatggatggaccacaagaaaaatgcaagctttaatccatggtcacatccaggcagcggaagtgtggtggtatcagagcctctccaaccatggccacctccttttcaagccaagtgcaaaggttcaattgttgagcagcaatctttactatggcctgatccatggtttactcaaggcagtggaagcgtggtggtgaagatctcacagtatgggccatctcttcctggagccatttgcaaagttctacctgactgtaaggtgcaaaacatgaatggttttatgctggttggttttgaactgctgttcctgagctgcaatgaggtcttgaagcggaggggcaccgtcctgcccgtcggccgttacggctccggtggtgacgcggcgagagtgcgcagggcgaccgcaccggcgccggcgccgacacaggacgccgcctccagcaagaacagagcgcttctcagctgcggcgacgacgacacacctgtctcacggaacggatcggtcgttaccagcatagacaaacctgccaccgccgccgcctccacgccgcttgtgaccataccgaagctcccagcgccggactccctcgtgatccttccatccgtagacaagccgcagccagaattcgtcatcccagacgcggcgtatctaggagctccagcgccgctactctcctctccttgccggtggccgcgagtagcgtcgacaggggcacggcagtggcaaggctgtcacgctgcgtggctatctcccgtcgcgccgctctcctcctccttgtcggctgccatcgctctcctcctcctcgtcggcggccgttgggctaggagctcctgcggggtcttcgccatcggatttttctag
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| Protein seq | MPDCLGGDSGAVLCITVSHIFYPVTTEVLHQVYDSYGAATVQILATSTWHVEALVSFMSSQDAERARSATQGRNIYDGCCQLDIQYAHPLLGGDVDMTPTKCSMSGSSSVTTRQVAESSPAAPEHVFPVTTNPSMPSATSAAAAPSVSFTATKEDEADMGKVEDKSEKTFHDLCVEIKEMINQMLETCRGSKVEPIVGDDSTGVAVVPCTVTDSVSIALEVSQEIDADMGDNVDLAREEDCVENTAVETKLYHVFSFSDQWMDHKKNASFNPWSHPGSGSVVVSEPLQPWPPPFQAKCKGSIVEQQSLLWPDPWFTQGSGSVVVKISQYGPSLPGAICKVLPDCKVQNMNGFMLVGFELLFLSCNEVLKRRGTVLPVGRYGSGGDAARVRRATAPAPAPTQDAASSKNRALLSCGDDDTPVSRNGSVVTSIDKPATAAASTPLVTIPKLPAPDSLVILPSVDKPQPEFVIPDAAYLGAPAPLLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSSSLSAAIALLLLVGGRWARSSCGVFAIGFF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0008730 | OsKeNa_07g0008730.02 | Chr07 | 8020252 | 8023254 | - | IsoSeq | ||
| CDS seq | atgctgatatgggtgacaacgtcgacttggctagggaagaggattgtgtggagaacactgcagtggagaccaaattgtatcatgtgttttccttcagtgatcaatggatggaccacaagaaaaatgcaagctttaatccatggtcacatccaggcagcggaagtgtggtggtatcagagcctctccaaccatggccacctccttttcaagccaagtgcaaaggttcaattgttgagcagcaatctttactatggcctgatccatggtttactcaaggcagtggaagcgtgg
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| Protein seq | MLIWVTTSTWLGKRIVWRTLQWRPNCIMCFPSVINGWTTRKMQALIHGHIQAAEVWWYQSLSNHGHLLFKPSAKVQLLSSNLYYGLIHGLLKAVEAW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.042779 | 1.425326 | 1.138599 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g13880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005560 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005430 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005350 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005490 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0137500 | SBH | 0.98382 | 2.9583005 | 6.404438 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006020 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0139200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005450 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005490 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005440 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005640 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005420 | SBH | 0.0 | 0.0 | 0.000000 |
