Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g13880 | OGI:07023130 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:7941580-7942424 | ||||||||
| Gene Symbol | OsSSIIaChr7 | ||||||||||
| DNA seq | CTAGAAAAATCCGATGGCGAAGACCCCGCAGGAGCTCCTAGCCCAACGGCCGCCGACGAGGAGGAGGAGAGCGACGGCAGCCGACAAGGAGGAGGAGAGCGGCGCGACGGGAGATAGCCACGCAGCGTGACAGCCTTGCCACTGCCGTGCCCCTGTCGACGCTACTCGCGGCCACCGGCAAGGAGAGGAGAGCGGCGGCGCTGGAGCTCCTAGATACGCCGCGTCTGGGATGATGAATTCTGGCTGCGGCCTGTCTACGGATGGAAGGATCACGAGGGAGTCCGGCGCTGGAAGCTTCGGTATGGTCACAAGCGGCGTGGAGGCGGCGGCGGTGGCAGGTTTGTCTATGCTGGTAACGACCGATCCGTTCCGTGAGACAGGTGTGTCGTCGTCGCCGCAGCTGAGAAGCGCTCCGTTCTTGCTGGAGGCGGCGTCCTGTGTCGGCGCCGGCGCCGGTGCGGTCGCCCTGCGCACTCTCGCCGCGTCACCACCGGAGCCGTAACGGCCGACGGGCAGGATGGTGCCCCTCCGCTTCAAGACCTGCAAACACAGCGCACGCACGCGCAAGCACACACATCGGTTTCAAACGAACTCAGCAAAGCAAATCAAAGCGGAAAAACACTTGAGCATGACGATCTCGATGCTCCAACCTACCTTGCCGACGCCGTCACCACGACGCGAGCGGGAAGGCTGCCACGCGCCCGAAGAACCTTGTCGTCGTCACCCACCCGCTCCACGCCCGCATCGTTCTCCCCATTATCTGCGCAGCGCACCACGGCCGCATCCCGACGCCGACGTCGGAATGACTCAACCAACTCAGTTTGGTATAACCGACTTAAGGGCAT
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| CDS seq | ATGCCCTTAAGTCGGTTATACCAAACTGAGTTGGTTGAGTCATTCCGACGTCGGCGTCGGGATGCGGCCGTGGTGCGCTGCGCAGATAATGGGGAGAACGATGCGGGCGTGGAGCGGGTGGGTGACGACGACAAGGTCTTGAAGCGGAGGGGCACCATCCTGCCCGTCGGCCGTTACGGCTCCGGTGGTGACGCGGCGAGAGTGCGCAGGGCGACCGCACCGGCGCCGGCGCCGACACAGGACGCCGCCTCCAGCAAGAACGGAGCGCTTCTCAGCTGCGGCGACGACGACACACCTGTCTCACGGAACGGATCGGTCGTTACCAGCATAGACAAACCTGCCACCGCCGCCGCCTCCACGCCGCTTGTGACCATACCGAAGCTTCCAGCGCCGGACTCCCTCGTGATCCTTCCATCCGTAGACAGGCCGCAGCCAGAATTCATCATCCCAGACGCGGCGTATCTAGGAGCTCCAGCGCCGCCGCTCTCCTCTCCTTGCCGGTGGCCGCGAGTAGCGTCGACAGGGGCACGGCAGTGGCAAGGCTGTCACGCTGCGTGGCTATCTCCCGTCGCGCCGCTCTCCTCCTCCTTGTCGGCTGCCGTCGCTCTCCTCCTCCTCGTCGGCGGCCGTTGGGCTAGGAGCTCCTGCGGGGTCTTCGCCATCGGATTTTTCTAG
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| Protein seq | MPLSRLYQTELVESFRRRRRDAAVVRCADNGENDAGVERVGDDDKVLKRRGTILPVGRYGSGGDAARVRRATAPAPAPTQDAASSKNGALLSCGDDDTPVSRNGSVVTSIDKPATAAASTPLVTIPKLPAPDSLVILPSVDRPQPEFIIPDAAYLGAPAPPLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSSSLSAAVALLLLVGGRWARSSCGVFAIGFF |
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| Function | Soluble starch synthase 2-3, chloroplastic/amyloplastic [UniProtKB/Swiss-Prot:Q0DDE3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g13880 | LOC_Os07g13880.1 | Chr07 | 7941580 | 7942424 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCCTTAAGTCGGTTATACCAAACTGAGTTGGTTGAGTCATTCCGACGTCGGCGTCGGGATGCGGCCGTGGTGCGCTGCGCAGATAATGGGGAGAACGATGCGGGCGTGGAGCGGGTGGGTGACGACGACAAGGTCTTGAAGCGGAGGGGCACCATCCTGCCCGTCGGCCGTTACGGCTCCGGTGGTGACGCGGCGAGAGTGCGCAGGGCGACCGCACCGGCGCCGGCGCCGACACAGGACGCCGCCTCCAGCAAGAACGGAGCGCTTCTCAGCTGCGGCGACGACGACACACCTGTCTCACGGAACGGATCGGTCGTTACCAGCATAGACAAACCTGCCACCGCCGCCGCCTCCACGCCGCTTGTGACCATACCGAAGCTTCCAGCGCCGGACTCCCTCGTGATCCTTCCATCCGTAGACAGGCCGCAGCCAGAATTCATCATCCCAGACGCGGCGTATCTAGGAGCTCCAGCGCCGCCGCTCTCCTCTCCTTGCCGGTGGCCGCGAGTAGCGTCGACAGGGGCACGGCAGTGGCAAGGCTGTCACGCTGCGTGGCTATCTCCCGTCGCGCCGCTCTCCTCCTCCTTGTCGGCTGCCGTCGCTCTCCTCCTCCTCGTCGGCGGCCGTTGGGCTAGGAGCTCCTGCGGGGTCTTCGCCATCGGATTTTTCTAG
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| Protein seq | MPLSRLYQTELVESFRRRRRDAAVVRCADNGENDAGVERVGDDDKVLKRRGTILPVGRYGSGGDAARVRRATAPAPAPTQDAASSKNGALLSCGDDDTPVSRNGSVVTSIDKPATAAASTPLVTIPKLPAPDSLVILPSVDRPQPEFIIPDAAYLGAPAPPLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSSSLSAAVALLLLVGGRWARSSCGVFAIGFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008610 | SBH | 0.000000 | 1.257977 | 0.912091 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008730 | RBH | 0.042779 | 1.425326 | 1.138599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008550 | SBH | 0.0 | 1.741357 | 1.194350 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008350 | SBH | 0.0 | 0.064984 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008490 | SBH | 0.912674 | 0.000000 | 12.786172 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0137500 | SBH | 0.98382 | 2.9583005 | 6.404438 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008980 | SBH | 0.042002 | 0.209578 | 0.811103 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0139200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008450 | SBH | 0.076779 | 0.056306 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008470 | SBH | 0.177356 | 21.922144 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008460 | SBH | 3.995538 | 7.558509 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008640 | SBH | 0.0 | 0.000000 | 0.317393 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008520 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008520 | SBH | 0.075160 | 0.999404 | 0.635161 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008430 | SBH | 0.0 | 3.190505 | 0.727447 |
