Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0004540 | OGI:07011440 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:3688638-3692189 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acccgctttagcagaagggaggcgtaaagtagtgcaggcaaggcgagaagggcaagaaggaggagggaggagggatggtgaagaagaaggaggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggcgctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctcattccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggtatcctatatctatctatctatctatctattccgtcaggtaggtgagatggtatgatatgtatgttgtgggtgggtaatgaatgtttcaggggaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgagcaggtccaccaagggcgttgtctgcgaggacgtcttcgagagcctggttacttcaaacttcacatctttgctctgcctgccctgtatctatcttggaagtggaacttgcatccgcagaattgctgctatgctcgtcccttttctctggggtgttattggtaactacttatgctgctgttttatttggcagattgttttttctgaagcctggtggattggaacaaaagaagaaaacccacaagaactgaaactggattttccaaaagagttccagaatgtgcgtgtgctctccatccatatatgttcttaattttcgcttcttctacgacgctactgtgcctctcatctcatgtgcttcttcatttcaaactggtaggatggggctgttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgttaccatcaataaaccgccaaaggaaaccaccacaggatccctttccccaaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtaagtcagtttcacccttttctgttgctctctcggataaacagaaaagcacacggactctagttgttgcttagcagctgaaagattgcctactacctgtatttatttggcttaacggctaatgtttctaaaaacaaatatattcatctcccacccacccaaaaaaaggcaaagaataaaaaggtatacttgatagatccctcgctctttatgcaggtatactgagatatcctctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaaggtagtgataccgaatttaatttcccacgcttttgttgcatataacgtaaaagtagcagcatataatgtaaaagttgcagttttgtgaaaatttcccacgctattgttgcaggaaactgaaacatgtcgcttatgttgcagcaaactgatagttttgtcactaaagttgcagttttctgaaatttactcaattttataagattcaaatatatgaatcaatgtctatcaagcttttatcttttgtaaataattttattgtgtttatttgctttcttcgtttgaagcaggtgaagagtccggcagttaagaatgaatcccaaagtgaagacattaaacctgcagattcatctgcgcagcctatctcagctaagaaggagccactcgttcaggctactctgtctagcatgtttaaaaaagcagaagaaaaaaaggtggaaattcatacctgttattataatagtttctctccttgtgatagtgggcagttatacccttaacttcgatataatgtttgcttgatgcattaattgaaccaacttcacaacatacctcttttttcgtatgtgtgttttgaacattatctgttttcatgcctggtacaaataaattagttaagcatctgacaaaaggatttctatttcagagatgtactagaagcccgaaaggatctccagcaacaaaaggttcttcatatttacgcaattctaggtttcttgtgttttcctttattacacaacgaaaattccttttgattggacttgtgattggcattgttctacaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtaagtgcagtagcaagtctgttgttagaagcatctaatagaccttggtgcgattacatttgttttaagcctctgaaggccttcttcaatggagaagacttgttctaaaataatccaaaggctttgggaggcttacttgagaagctttcagcttttgtctatgtaaggggcatttaaaatattaatccatttcatgaagctttaggaccatctcaagcctgtcgaatcggaataaatgatggaattaacatctattgtggtggctctatactaaatatgctatttgaattttacaagacttgatattgctgggtaaaagctgtgatgcatggggggaaacaaatgcattttagtggctcttagtgcaatgtgcaacgatctatcagcttttctttaactgagtacatcagtacatgttagtgttcttcatatgaagctgacaattgtatttacatggatgtagctggcagaagtcagaaaaagagaaaaacacaggtactttacttagcaacaatgatcagggattttaatttgaatgtcgcccattgtttactttgctgattgcctttgccctcatttttctgtcacaggtagaagatgacgaaattgaagtgctctcaagttcctcccaggtgattgtttttctgatagctacagtgtagtagattggtacattatggccattgttcttgttgttgttgttgttgttatgaggttgtgccttcctcccagctaatcctaacagcatatgacaggataacaatgtggacgatgatagcgatgaagactgggctgagtgatgtgcagctgaagttgaaaggaatgtagcactcggtgatgaagagtgaaggatgcaagattgtgggcaattgttttcttttggggcaatatcacaattgatgtgtttgaggagcttaggttctgacctgaccattgatgagatatatcatcatagtcttttcatcgtactggtgaaattgaaaaccgagaagtgtgatctgttagcactagatttattatttatttgacttgttgtaatgtaacataaacaagagctgataaatcattgttagggtctgcaatgcaaattagtacggcaattgcagatataaactataccattgatgaagaaaatgattgttgtgtatttatttatggtattgataaattaaacggttttatctgaacaactgagagggtcctggggcttaaggcaaacaggcctgtttttgtaagagaaaaagctgaccccgagcttgtatgttc
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| CDS seq | atggtgaagaagaaggaggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggcgctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctcattccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggggaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgagcaggtccaccaagggcgttgtctgcgaggacgtcttcgagagcctggttacttcaaacttcacatctttgctctgcctgccctgtatctatcttggaagtggaacttgcatccgcagaattgctgctatgctcgtcccttttctctggggtgttattggtaactacttatgctgctgttttatttggcagattgttttttctgaagcctggtggattggaacaaaagaagaaaacccacaagaactgaaactggattttccaaaagagttccagaatgatggggctgttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgttaccatcaataaaccgccaaaggaaaccaccacaggatccctttccccaaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtatactgagatatcctctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaaggtgaagagtccggcagttaagaatgaatcccaaagtgaagacattaaacctgcagattcatctgcgcagcctatctcagctaagaaggagccactcgttcaggctactctgtctagcatgtttaaaaaagcagaagaaaaaaagagatgtactagaagcccgaaaggatctccagcaacaaaaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtaagtgcagtagcaagtctgttgttagaagcatctaa
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| Protein seq | MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLVTSNFTSLLCLPCIYLGSGTCIRRIAAMLVPFLWGVIGNYLCCCFIWQIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSGKCSSKSVVRSI |
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| Function | DNA-binding protein RHL1 [UniProtKB/Swiss-Prot:O81242] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0004540 | OsKeNa_07g0004540.01 | Chr07 | 3688657 | 3692189 | + | NAM | ||
| CDS seq | atggtgaagaagaaggaggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggcgctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctcattccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggggaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgagcaggtccaccaagggcgttgtctgcgaggacgtcttcgagagcctgattgttttttctgaagcctggtggattggaacaaaagaagaaaacccacaagaactgaaactggattttccaaaagagttccagaatgatggggctgttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgttaccatcaataaaccgccaaaggaaaccaccacaggatccctttccccaaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtatactgagatatcctctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaaggtgaagagtccggcagttaagaatgaatcccaaagtgaagacattaaacctgcagattcatctgcgcagcctatctcagctaagaaggagccactcgttcaggctactctgtctagcatgtttaaaaaagcagaagaaaaaaagagatgtactagaagcccgaaaggatctccagcaacaaaaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtgctggcagaagtcagaaaaagagaaaaacacaggtagaagatgacgaaattgaagtgctctcaagttcctcccaggataacaatgtggacgatgatagcgatgaagactgggctgagtga
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| Protein seq | MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSAGRSQKKRKTQVEDDEIEVLSSSSQDNNVDDDSDEDWAE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0004540 | OsKeNa_07g0004540.02 | Chr07 | 3688658 | 3692097 | + | NAM | ||
| CDS seq | atggtgaagaagaaggaggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggcgctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctcattccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggggaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgagcaggtccaccaagggcgttgtctgcgaggacgtcttcgagagcctggttacttcaaacttcacatctttgctctgcctgccctgtatctatcttggaagtggaacttgcatccgcagaattgctgctatgctcgtcccttttctctggggtgttattggtaactacttatgctgctgttttatttggcagattgttttttctgaagcctggtggattggaacaaaagaagaaaacccacaagaactgaaactggattttccaaaagagttccagaatgatggggctgttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgttaccatcaataaaccgccaaaggaaaccaccacaggatccctttccccaaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtatactgagatatcctctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaaggtgaagagtccggcagttaagaatgaatcccaaagtgaagacattaaacctgcagattcatctgcgcagcctatctcagctaagaaggagccactcgttcaggctactctgtctagcatgtttaaaaaagcagaagaaaaaaagagatgtactagaagcccgaaaggatctccagcaacaaaaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtaagtgcagtagcaagtctgttgttagaagcatctaa
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| Protein seq | MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMSRSTKGVVCEDVFESLVTSNFTSLLCLPCIYLGSGTCIRRIAAMLVPFLWGVIGNYLCCCFIWQIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKGGAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSGKCSSKSVVRSI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0004540 | OsKeNa_07g0004540.03 | Chr07 | 3688638 | 3692073 | + | IsoSeq | ||
| CDS seq | atgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggcgctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctcattccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacagggga
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| Protein seq | MRRPTSGAASAPSPSLMAYSSAGSRRRRARRSRPPLPCRGCRAATSCAAAGSARAASSSHSPASSRPRLLPRAAASASSLILAPKILCSTSTSHRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 3690080 | 3690367 | + | OsKeNa_07g0004540.03 | OsKeNa_07g0004540.01,OsKeNa_07g0004540.03,OsKeNa_07g0004540.02 | All |
| RI | Chr07 | 3689112 | 3689453 | + | OsKeNa_07g0004540.02 | OsKeNa_07g0004540.01,OsKeNa_07g0004540.03,OsKeNa_07g0004540.02 | All |
| RI | Chr07 | 3690861 | 3691418 | + | OsKeNa_07g0004540.02 | OsKeNa_07g0004540.01,OsKeNa_07g0004540.03,OsKeNa_07g0004540.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.433621 | 3.880136 | 1.955332 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0172200 | RBH | 3.917219 | 2.023663 | 4.079774 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07580 | RBH | 2.494954 | 1.214678 | 0.878825 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0172200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004580 | RBH | 1.242455 | 12.277854 | 3.643198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004440 | RBH | 0.791322 | 6.908504 | 7.498724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004370 | RBH | 0.300581 | 0.321602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004470 | RBH | 11.469223 | 13.414010 | 14.582424 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0064000 | RBH | 9.557188 | 16.9421395 | 14.838715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004980 | RBH | 0.373023 | 0.312679 | 0.954542 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0067500 | RBH | 9.2168265 | 14.645027 | 28.9466445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004460 | RBH | 0.542096 | 0.211787 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004450 | RBH | 1.111748 | 3.323952 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004490 | RBH | 8.209051 | 14.593354 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004570 | RBH | 1.051345 | 1.131428 | 1.561826 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004450 | RBH | 0.606978 | 2.288301 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004620 | RBH | 1.219334 | 4.347499 | 3.048000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004420 | RBH | 1.080478 | 22.835897 | 7.502233 |
